mRNA_H-paniculata_contig4977.12176.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4977.12176.1
Unique NamemRNA_H-paniculata_contig4977.12176.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4977.12176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4977contigH-paniculata_contig4977:6929..8135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size457
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4977.12176.1prot_H-paniculata_contig4977.12176.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4977 6929..7240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930465.2626166-CDS-H-paniculata_contig4977:6928..72401622930465.2626166-CDS-H-paniculata_contig4977:6928..7240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4977 6929..7240 -
1691481303.8297799-CDS-H-paniculata_contig4977:6928..72401691481303.8297799-CDS-H-paniculata_contig4977:6928..7240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4977 6929..7240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930465.2796683-UTR-H-paniculata_contig4977:7240..73011622930465.2796683-UTR-H-paniculata_contig4977:7240..7301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4977 7241..7301 -
1691481303.8378177-UTR-H-paniculata_contig4977:7240..73011691481303.8378177-UTR-H-paniculata_contig4977:7240..7301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4977 7241..7301 -
1622930465.296859-UTR-H-paniculata_contig4977:8053..81351622930465.296859-UTR-H-paniculata_contig4977:8053..8135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4977 8054..8135 -
1691481303.8454733-UTR-H-paniculata_contig4977:8053..81351691481303.8454733-UTR-H-paniculata_contig4977:8053..8135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4977 8054..8135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4977.12176.1

>prot_H-paniculata_contig4977.12176.1 ID=prot_H-paniculata_contig4977.12176.1|Name=mRNA_H-paniculata_contig4977.12176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSLPRPGGYPGEKKTAGGGLGYGNSSSYSGGGGGNYNASAQQSAFAGYTP
PASIPTNPYNDAGQPTDPNPGPTGFSTIGGSGYTGGGYSGAGGRGGSTAF
GGGV
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mRNA from alignment at H-paniculata_contig4977:6929..8135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4977.12176.1 ID=mRNA_H-paniculata_contig4977.12176.1|Name=mRNA_H-paniculata_contig4977.12176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1207bp|location=Sequence derived from alignment at H-paniculata_contig4977:6929..8135- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGACTCTCCTCCTGCCTAAAGGTGCATTGCAGCTGCCCTCGATCACAC
CTCCCCCAACACACGAAAACGACCGCAATAAGGTAAGTCTCACACATCCA
CAGCAGTGGGCTGCCAAGATTCCGTTGGGTTTTTCTCTTCGGTTCAGAAT
TGTTTGAAATCGAAAAGAGAGACAGAAATAGACAGAGACAAGAGACCCAC
ACAGTGTCCAAAGCGCGGACAATTGTGCTGCTCTTGCGGGAGGTGCGTAT
TCCGCCTAGTGCTGTGCACCTGAACCTCTTTGCGTGCACGCTTTGTAATA
TGCAGGTTATTTGTATACCCAATGCCGTCGTACAATAACTACTCATCGAC
AGGAAGCCTTTGATATCTGTGTACCAGTTGCCACCTCAAATCATTCCCCA
GTCTCCTTTGAGGAAAATTAATTATTTACTGTACTGTAATGTACCCTACT
GTACGTTGAGTCCTACTGTACGTTGAATAACACCCCCCTCGAGCTCGATC
ACTCGGAAGGCAAAGCGATCGAGTACGTTACAGATGGTATTACCTAATTT
GCCGGCGGCGGTGTATTTTTGCTTTTGGTGATGCTTTTAGTGATGAAGCT
TCGTATCGACCCTTAGGTTTCTTTCTCGACAACACCTGATTGAGCGTACA
AAACAATGAAACCACTCTTTTCTTTTCACCTCCCGTATACACATCGCCCG
AAACAGAAGCCCCCTCTCTCGTCTCCTCACCCCTCAAAAGGAACACGGTT
TCCTGTGCATGTCCTCCTCTACTCTCCGGGTACGCAAAGCACTCATCTTT
TCCCCCATCTCCTTCTCTCTACATAAATTTCCAGCAGGAATCCCTGTTAT
ACACAAGACTAAACACCGCTCCTCTGGCCGCGAAGGAATACAATCATGAG
CCTACCACGACCCGGTGGTTACCCCGGAGAAAAGAAGACCGCCGGTGGCG
GGCTCGGCTATGGCAATAGTAGCAGCTATAGTGGTGGCGGTGGTGGTAAC
TATAACGCGTCCGCCCAACAGAGCGCGTTTGCAGGATACACCCCGCCAGC
CTCCATCCCCACAAACCCTTACAACGATGCGGGACAACCGACCGACCCAA
ATCCTGGCCCGACCGGGTTTTCAACAATAGGAGGCAGTGGGTACACGGGG
GGCGGGTATTCGGGCGCTGGCGGCAGGGGCGGAAGCACGGCCTTCGGGGG
GGGCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4977:6929..8135-

>mRNA_H-paniculata_contig4977.12176.1 ID=mRNA_H-paniculata_contig4977.12176.1|Name=mRNA_H-paniculata_contig4977.12176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig4977:6929..8135- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCTACCACGACCCGGTGGTTACCCCGGAGAAAAGAAGACCGCCGG
TGGCGGGCTCGGCTATGGCAATAGTAGCAGCTATAGTGGTGGCGGTGGTG
GTAACTATAACGCGTCCGCCCAACAGAGCGCGTTTGCAGGATACACCCCG
CCAGCCTCCATCCCCACAAACCCTTACAACGATGCGGGACAACCGACCGA
CCCAAATCCTGGCCCGACCGGGTTTTCAACAATAGGAGGCAGTGGGTACA
CGGGGGGCGGGTATTCGGGCGCTGGCGGCAGGGGCGGAAGCACGGCCTTC
GGGGGGGGCGTGATGAGCCTACCACGACCCGGTGGTTACCCCGGAGAAAA
GAAGACCGCCGGTGGCGGGCTCGGCTATGGCAATAGTAGCAGCTATAGTG
GTGGCGGTGGTGGTAACTATAACGCGTCCGCCCAACAGAGCGCGTTTGCA
GGATACACCCCGCCAGCCTCCATCCCCACAAACCCTTACAACGATGCGGG
ACAACCGACCGACCCAAATCCTGGCCCGACCGGGTTTTCAACAATAGGAG
GCAGTGGGTACACGGGGGGCGGGTATTCGGGCGCTGGCGGCAGGGGCGGA
AGCACGGCCTTCGGGGGGGGCGTG
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