mRNA_H-paniculata_contig49753.12174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49753.12174.1
Unique NamemRNA_H-paniculata_contig49753.12174.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49753.12174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49753contigH-paniculata_contig49753:182..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930465.1727571-CDS-H-paniculata_contig49753:181..5891622930465.1727571-CDS-H-paniculata_contig49753:181..589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49753 182..589 -
1691481303.8127682-CDS-H-paniculata_contig49753:181..5891691481303.8127682-CDS-H-paniculata_contig49753:181..589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49753 182..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49753.12174.1prot_H-paniculata_contig49753.12174.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49753 182..589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49753.12174.1

>prot_H-paniculata_contig49753.12174.1 ID=prot_H-paniculata_contig49753.12174.1|Name=mRNA_H-paniculata_contig49753.12174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
DCSSYPQLLTVKNGFILDFKISGTSDVALCGESGAEAGVPSTALKFLFEL
KKPETLRNSGQAAISQAATESLLANVPSPPRRPYVVFTDLVDNKWTILWM
DNKVIRAWLLKRGEAVAVIWRLLDEEDAGGGEYCK*
back to top

mRNA from alignment at H-paniculata_contig49753:182..589-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49753.12174.1 ID=mRNA_H-paniculata_contig49753.12174.1|Name=mRNA_H-paniculata_contig49753.12174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig49753:182..589- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTGTTCCTCTTACCCCCAGCTTCTCACTGTAAAGAATGGTTTCATCCT
AGATTTCAAGATATCTGGCACATCGGATGTTGCGCTGTGCGGAGAAAGTG
GAGCAGAAGCAGGCGTCCCGTCTACTGCATTGAAATTTCTGTTCGAGCTC
AAGAAGCCAGAAACGCTCCGCAACAGCGGACAGGCTGCGATCAGCCAAGC
TGCCACGGAGTCACTACTTGCGAACGTCCCTTCTCCGCCGCGAAGGCCCT
ACGTGGTCTTCACGGATTTAGTGGATAATAAGTGGACCATTCTGTGGATG
GACAACAAAGTGATCCGGGCATGGTTACTAAAACGTGGAGAAGCAGTAGC
GGTGATTTGGCGCTTGCTGGATGAAGAGGATGCCGGGGGTGGCGAATACT
GCAAGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig49753:182..589-

>mRNA_H-paniculata_contig49753.12174.1 ID=mRNA_H-paniculata_contig49753.12174.1|Name=mRNA_H-paniculata_contig49753.12174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig49753:182..589- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTGTTCCTCTTACCCCCAGCTTCTCACTGTAAAGAATGGTTTCATCCT
AGATTTCAAGATATCTGGCACATCGGATGTTGCGCTGTGCGGAGAAAGTG
GAGCAGAAGCAGGCGTCCCGTCTACTGCATTGAAATTTCTGTTCGAGCTC
AAGAAGCCAGAAACGCTCCGCAACAGCGGACAGGCTGCGATCAGCCAAGC
TGCCACGGAGTCACTACTTGCGAACGTCCCTTCTCCGCCGCGAAGGCCCT
ACGTGGTCTTCACGGATTTAGTGGATAATAAGTGGACCATTCTGTGGATG
GACAACAAAGTGATCCGGGCATGGTTACTAAAACGTGGAGAAGCAGTAGC
GGTGATTTGGCGCTTGCTGGATGAAGAGGATGCCGGGGGTGGCGAATACT
GCAAGTAAGACTGTTCCTCTTACCCCCAGCTTCTCACTGTAAAGAATGGT
TTCATCCTAGATTTCAAGATATCTGGCACATCGGATGTTGCGCTGTGCGG
AGAAAGTGGAGCAGAAGCAGGCGTCCCGTCTACTGCATTGAAATTTCTGT
TCGAGCTCAAGAAGCCAGAAACGCTCCGCAACAGCGGACAGGCTGCGATC
AGCCAAGCTGCCACGGAGTCACTACTTGCGAACGTCCCTTCTCCGCCGCG
AAGGCCCTACGTGGTCTTCACGGATTTAGTGGATAATAAGTGGACCATTC
TGTGGATGGACAACAAAGTGATCCGGGCATGGTTACTAAAACGTGGAGAA
GCAGTAGCGGTGATTTGGCGCTTGCTGGATGAAGAGGATGCCGGGGGTGG
CGAATACTGCAAGTAA
back to top