mRNA_H-paniculata_contig49741.12173.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49741.12173.1
Unique NamemRNA_H-paniculata_contig49741.12173.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: UPI000E6F524C (uncharacterized protein LOC113279956 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F524C)

HSP 1 Score: 83.2 bits (204), Expect = 1.540e-18
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   13 PKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVETELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATATSR 297
            PKS+R+ +  KY   + +AM  E+  L+E GT+  TELP G+KA+GSKW+ T K D++G +++ KAR V  GN QV G+DY++TFAP     T R
Sbjct:   18 PKSFREAM--KYPG-WKKAMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGKLVRLKARLVIFGNHQVEGLDYNETFAPVANMTTVR 109
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BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.510e-18
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATA 288
            VE  P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+    +  P+ A
Sbjct:  118 VEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAA 214
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BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.540e-18
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATA 288
            VE  P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A
Sbjct:  104 VEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAA 200
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BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: A0A6H5JJW3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW3_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.870e-18
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATA 288
            VE  P +Y+DV+ SKYK  +  AM+ E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A
Sbjct:   43 VEAVPMTYKDVICSKYKVFWEAAMEEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAA 139
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BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.480e-18
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATA 288
            VE  P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G IL  KAR V  G  Q+ G+D+  + +  P+ A
Sbjct:   12 VEAVPMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAA 108
[Close]
BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.460e-18
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATA 288
            VE  P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT + G I+  KAR V  G  ++ G+D+  + +  P+ A
Sbjct:   12 VEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAA 108
[Close]
BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: A0A6H5JXX7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 9.750e-18
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATA 288
            VE  P +YRDV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A
Sbjct:  304 VEAVPMTYRDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFYHSSSACPSAA 400
[Close]
BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 9.820e-18
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATA 288
            VE  P +Y+DV+ SKYK  +  AM  E+ G  + GTF +  ELP GRKAIGSKWVL+WKT + G I+  KAR V  G  Q+ G+D+  + +  P+ A
Sbjct:  104 VEAVPMTYKDVMCSKYKVFWEAAMKNEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAA 200
[Close]
BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.380e-17
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATA 288
            VE  P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A
Sbjct:  355 VEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAA 451
[Close]
BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.390e-17
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVET-ELPVGRKAIGSKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATA 288
            VE  P +Y+DV+ SKYK  +  AM +E+ G  + GTF +  ELP GRKAIGSKWV +WKT++ G I+  KAR V  G  Q+ G+D+  + +  P+ A
Sbjct:  496 VEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAA 592
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49741.12173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000E6F524C1.540e-1847.37uncharacterized protein LOC113279956 n=1 Tax=Papav... [more]
A0A6H5K282_9PHAE2.510e-1846.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE3.540e-1846.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJW3_9PHAE5.870e-1846.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE7.480e-1847.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE8.460e-1845.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXX7_9PHAE9.750e-1847.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRB0_9PHAE9.820e-1847.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.380e-1746.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE1.390e-1746.39Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49741contigH-paniculata_contig49741:38..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.0
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog5217.XP_007002288.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,3VFTM@5234,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930465.1305635-CDS-H-paniculata_contig49741:37..3341622930465.1305635-CDS-H-paniculata_contig49741:37..334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49741 38..334 -
1691481303.8025897-CDS-H-paniculata_contig49741:37..3341691481303.8025897-CDS-H-paniculata_contig49741:37..334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49741 38..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49741.12173.1prot_H-paniculata_contig49741.12173.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49741 38..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49741.12173.1

>prot_H-paniculata_contig49741.12173.1 ID=prot_H-paniculata_contig49741.12173.1|Name=mRNA_H-paniculata_contig49741.12173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
VEEAPKSYRDVLESKYKSVFLEAMDREMIGLKEAGTFVETELPVGRKAIG
SKWVLTWKTDQDGFILKPKARFVCLGNLQVAGVDYDDTFAPTPATATSR
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mRNA from alignment at H-paniculata_contig49741:38..334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49741.12173.1 ID=mRNA_H-paniculata_contig49741.12173.1|Name=mRNA_H-paniculata_contig49741.12173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig49741:38..334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGAAGAAGCACCCAAGTCATACCGCGATGTACTAGAGTCTAAATACAA
GAGTGTCTTTCTAGAGGCGATGGATAGGGAGATGATCGGACTGAAAGAAG
CGGGTACGTTCGTAGAAACAGAACTACCCGTAGGACGGAAAGCCATAGGC
TCTAAATGGGTACTAACTTGGAAGACAGACCAGGATGGTTTTATCTTGAA
GCCCAAAGCTAGGTTTGTTTGTCTGGGAAACCTCCAAGTTGCAGGGGTAG
ACTATGACGATACATTCGCCCCCACCCCCGCAACTGCAACATCTAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig49741:38..334-

>mRNA_H-paniculata_contig49741.12173.1 ID=mRNA_H-paniculata_contig49741.12173.1|Name=mRNA_H-paniculata_contig49741.12173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig49741:38..334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGAAGAAGCACCCAAGTCATACCGCGATGTACTAGAGTCTAAATACAA
GAGTGTCTTTCTAGAGGCGATGGATAGGGAGATGATCGGACTGAAAGAAG
CGGGTACGTTCGTAGAAACAGAACTACCCGTAGGACGGAAAGCCATAGGC
TCTAAATGGGTACTAACTTGGAAGACAGACCAGGATGGTTTTATCTTGAA
GCCCAAAGCTAGGTTTGTTTGTCTGGGAAACCTCCAAGTTGCAGGGGTAG
ACTATGACGATACATTCGCCCCCACCCCCGCAACTGCAACATCTAGAGTA
GAAGAAGCACCCAAGTCATACCGCGATGTACTAGAGTCTAAATACAAGAG
TGTCTTTCTAGAGGCGATGGATAGGGAGATGATCGGACTGAAAGAAGCGG
GTACGTTCGTAGAAACAGAACTACCCGTAGGACGGAAAGCCATAGGCTCT
AAATGGGTACTAACTTGGAAGACAGACCAGGATGGTTTTATCTTGAAGCC
CAAAGCTAGGTTTGTTTGTCTGGGAAACCTCCAAGTTGCAGGGGTAGACT
ATGACGATACATTCGCCCCCACCCCCGCAACTGCAACATCTAGA
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