mRNA_H-paniculata_contig4973.12171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4973.12171.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI) HSP 1 Score: 553 bits (1425), Expect = 9.860e-173 Identity = 334/568 (58.80%), Postives = 393/568 (69.19%), Query Frame = 1
Query: 22 GSDEVDTDWDREFF----GAGGKGESSPNDARDITRANIAKGLKGLLGGGTS----QVDSEDAKTGGAGDTLTGVPDKCRVVGRMLRGGKAGPAVTIVKYPRACHLICLRVGAGPDGEEAGGSSVASPDLNRGDLSIGGLASSPIVGESLTPSNSKAQGRAMHGQRMVEWLESLISKRAASHRSKAELKAANARLVRALQVMEKKKLTSRNTKVFLECSISTWRLGERESCVSVLKSFFHILRAQSRSISRKSVQGLGSPST-SSDTGHDTYTMFRHTIKMLEIASLLLKPESSLWVLHMRLGSQSRNVGVNLSRSSRGVFGDMLRIACSAFPSYREAFSLVELRAIAHHLGDIVDAGGTSN-TDSSDSDSSMGRFTN-GVHGVREH------VVGSWDSYDEEEG--GVGYSWSAQGGSGRHQAPTLVTRMPQAICNNYLRVYARAVRGRSEPSGGPGSGSVYRGSM-DPVRGGARSPVIPSPNTLLQRSLSSSSAVSRVSSHFSHFTSSSSPVQLMLPP-FNQRSSGVADDDALPGRPGNSNGGSRGRDGKSSAALDAHAARVKYL 1662
GSD+ DTDWD E G G GE SPN+ARD+ RANIA+GLK LL G Q + DA+ G LTGVPDKCRVVGR+L+GG+AGP VTIVKYPRACHL+CLRV D + AG ++ + A + G +LTP SK +GRAMHGQRMVEWLE+LISKRA +R+K EL+AAN+RLV+ LQVMEK+ L RNTKVFLECS+STWRLGERESCVSVLKS+F ILR QSR+ +RK+ QG G + SDT DTYTMF+HT+KMLEIASLLL+P SSLW+L M++ SQ + + RS+RGVFGDMLRIACSAFPSYREAFSLVELRA HHLGDIV AG + ++ SDS MG F + G+HG G WD +++ G GV Y+WSAQGG+GRHQAPTLV RMPQAIC NYLRVYARAVRG S+ SGGPGS D RGGARSP +PSPNTLL RSLSSSSA+SRVSSHFSHF S+ +PV+L LP F +R +G ++A G DA AAR KYL
Sbjct: 519 GSDDADTDWDLELGLVGPGTGRTGEPSPNNARDVKRANIAEGLKALLRGAPQGCKHQSGASDARQG-----LTGVPDKCRVVGRLLKGGRAGPDVTIVKYPRACHLLCLRVSVEQDSKTAGATAAPTD------------AGASFAG-ALTP--SKGKGRAMHGQRMVEWLETLISKRADLYRTKNELRAANSRLVKGLQVMEKR-LNPRNTKVFLECSMSTWRLGERESCVSVLKSYFQILRMQSRTNARKAAQGGGGTTPLGSDTTKDTYTMFQHTLKMLEIASLLLRPNSSLWLLRMQINSQHQFTAGGVERSARGVFGDMLRIACSAFPSYREAFSLVELRATVHHLGDIVAAGAEAGGSEDGSSDSGMGDFADYGMHGAAGRGGGXXKAGGRWDGSEDDSGDWGVEYTWSAQGGAGRHQAPTLVDRMPQAICTNYLRVYARAVRGGSDRSGGPGSSXXXXXXXTDGFRGGARSPGLPSPNTLLLRSLSSSSAISRVSSHFSHFNSNVTPVELQLPATFRRRGNGADGEEAARAF----GAGXXXXXXXXXXXXDARAARAKYL 1061
BLAST of mRNA_H-paniculata_contig4973.12171.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE) HSP 1 Score: 550 bits (1417), Expect = 1.130e-171 Identity = 340/568 (59.86%), Postives = 392/568 (69.01%), Query Frame = 1
Query: 22 GSDEVDTDWDREFF----GAGGKGESSPNDARDITRANIAKGLKGLLGG----GTSQVDSEDAKTGGAGDTLTGVPDKCRVVGRMLRGGKAGPAVTIVKYPRACHLICLRVGAGPDGEEAGGSSVASPDLNRGDLSIGGLASSPIVGESLTPSNSKAQGRAMHGQRMVEWLESLISKRAASHRSKAELKAANARLVRALQVMEKKKLTSRNTKVFLECSISTWRLGERESCVSVLKSFFHILRAQSRSISRKSVQG-LGSPSTSSDTGHDTYTMFRHTIKMLEIASLLLKPESSLWVLHMRLGSQSRNVGVNLSRSSRGVFGDMLRIACSAFPSYREAFSLVELRAIAHHLGDIVDAGGTSN-TDSSDSDSSMGRFTN-GVHGVREHVVG------SWDSYDEEEG--GVGYSWSAQGGSGRHQAPTLVTRMPQAICNNYLRVYARAVRGRSEPSGGPGSGSVYRGSM-DPVRGGARSPVIPSPNTLLQRSLSSSSAVSRVSSHFSHFTSSSSPVQLMLPP-FNQRSSGVADDDALPGRPGNSNGGSRGRDGKSSAALDAHAARVKYL 1662
GSD+ DTDWD E G G GE SPN+ARD+ RANIA+GL+ LL G G Q + DA+ G LTGVPDKCRVVGR+LRGG+AGP VTIVKYPRACHL+CLRV D G + A P RG + G L SK +GRAMHGQRMVEWLE+LISKRA +RSK EL+AAN+RLV+ LQVMEK+ L NTKVFLECS+STWRLGERESCVSVLKS+F ILR QSR+ +RK+ QG G+ SDT DTYTMF+HT+KMLEIASLLL+P SSLW+L M++ SQ + + RS+RGVFGDMLRIACSAFPSYREAFSLVELRA HHLGDIV AG + + S MG F + G+HG G WD ++ G GV Y+WSAQGG+GRHQAPTLV RMPQAIC NYLRVYARAVRG S+ SGGPGS D RGGARSP +PSPNTLL RSLSSSSA+SRVSSHFSHF S+ +PV+L LP F +R SG ++A GG+R SS ALDA AAR KYL
Sbjct: 147 GSDDADTDWDLELGLVGPGTGRTGEPSPNNARDVKRANIAEGLRALLRGAPQGGKHQPGASDARQG-----LTGVPDKCRVVGRLLRGGRAGPDVTIVKYPRACHLLCLRVSVEQDNTTTG--ATAPPTDARGSFA-GALTL------------SKGKGRAMHGQRMVEWLETLISKRADLYRSKNELRAANSRLVKGLQVMEKR-LNPCNTKVFLECSMSTWRLGERESCVSVLKSYFQILRMQSRTNARKAAQGGSGTTPLGSDTTKDTYTMFQHTLKMLEIASLLLRPNSSLWLLRMQINSQHQFTAGGVERSARGVFGDMLRIACSAFPSYREAFSLVELRATVHHLGDIVAAGAEAGGSXXXXXXSGMGDFADYGMHGAAGRGGGFGKAGRGWDGSEDNSGDWGVEYTWSAQGGAGRHQAPTLVDRMPQAICTNYLRVYARAVRGGSDRSGGPGSSXXXXXXXTDGFRGGARSPGLPSPNTLLLRSLSSSSAISRVSSHFSHFNSNVTPVELQLPATFRRRGSGADGEEAARAFGA---GGARXXX-XSSGALDALAARAKYL 689
BLAST of mRNA_H-paniculata_contig4973.12171.1 vs. uniprot
Match: A0A836CI77_9STRA (DENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI77_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.050e-25 Identity = 130/493 (26.37%), Postives = 199/493 (40.37%), Query Frame = 1
Query: 43 DWDREFFGAGGKGESSPNDARDITRANIAKGLKGLLGG--GTSQVDSEDAKTGGAGDTLTG-VPDKCRVVGRMLRGGKAGPAVTIVKYPRACHLICLRVGAGPDGEEAGGSSVASPDLNRGDLSIGGLASSPIVGESLTPSNSKAQGRAMHGQRMVEWLESLISKRAASHRSKAELKAANARLVRALQVMEKK--KLTSRNTKVFLECSISTWRLGERESCVSVLKSFFHILRAQSR---SISRKSVQGLGSPSTSSDTGHDTYTMFRHTIKMLEIASLLLKPESSLWVLHMRLGSQSRNVGVNLSRSSR-----------------------------------------GVFGDMLRIACSAFPSYREAFSLVELRAIAHHLGDIVDAGGTSNTDSSDSDSSMGRFTNGVHGVREHVVGSWD-----------SYDEEEGGVG------------YSWSAQGGSGRHQAPTLVTRMPQAICNNYLRVYARA 1305
DW+RE GA +D+ + TRA +AKG + LL G G +Q + +A T +G VPD CR+ ++LRG G V I++YPRACHL+ L+ G QGRAMHG ++EWL +L+ + A+ +K + +A L +E K +L + LE + R G+ + ++V + +L Q R +++ + + G P H + + R T++MLE+ +L +P L+ R G ++ G S ++ G F +MLR AC FP+YR+ F+L+ELRA+AHH +IV A DS D D + G G GS S ++ EG G + W AQ + T + + Q +C NYL +YARA
Sbjct: 203 DWEREAVGA--------SDSPETTRAIMAKGFRLLLKGSLGDAQAGNNNASTASVTGQASGAVPDSCRLADKLLRGDP-GQTVRIIRYPRACHLVTLKALEG-------------------------------------------QGRAMHGPALIEWLTTLVQRHVAADAAK-DARAQRRASAEVLLSLEAKSARLDVTAAHMLLESCAAAVRAGDDAAALNVTWRYLRVLDQQHRPSAAVAESARRFGGDPDD-----HSQFALLRLTLQMLELVAL--RPN-----LYERSGVRADGAGGGGSTAAAKSVAGSTSNPHLRGAAELRAPVRPPDKPPPVAASAAQPAAPGSFAEMLRTACQVFPAYRDCFALLELRAVAHHFREIVQAAEAEADDSGDGDD----VSEGGSGEDSCATGSEAGNARGQQRGARSANKGEGRAGSARLSLRSRPGHFLWVAQ--TADKLVHTKLRYLAQTVCANYLELYARA 624 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4973.12171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4973.12171.1 >prot_H-paniculata_contig4973.12171.1 ID=prot_H-paniculata_contig4973.12171.1|Name=mRNA_H-paniculata_contig4973.12171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=572bp SSLAGASGSDEVDTDWDREFFGAGGKGESSPNDARDITRANIAKGLKGLLback to top mRNA from alignment at H-paniculata_contig4973:2456..10161- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4973.12171.1 ID=mRNA_H-paniculata_contig4973.12171.1|Name=mRNA_H-paniculata_contig4973.12171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7706bp|location=Sequence derived from alignment at H-paniculata_contig4973:2456..10161- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4973:2456..10161- >mRNA_H-paniculata_contig4973.12171.1 ID=mRNA_H-paniculata_contig4973.12171.1|Name=mRNA_H-paniculata_contig4973.12171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3432bp|location=Sequence derived from alignment at H-paniculata_contig4973:2456..10161- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |