mRNA_H-paniculata_contig4973.12170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4973.12170.1
Unique NamemRNA_H-paniculata_contig4973.12170.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4973.12170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4973contigH-paniculata_contig4973:1956..2432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930464.687547-CDS-H-paniculata_contig4973:1955..23961622930464.687547-CDS-H-paniculata_contig4973:1955..2396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4973 1956..2396 +
1691481303.6072655-CDS-H-paniculata_contig4973:1955..23961691481303.6072655-CDS-H-paniculata_contig4973:1955..2396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4973 1956..2396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930464.7038052-UTR-H-paniculata_contig4973:2396..24321622930464.7038052-UTR-H-paniculata_contig4973:2396..2432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4973 2397..2432 +
1691481303.6155384-UTR-H-paniculata_contig4973:2396..24321691481303.6155384-UTR-H-paniculata_contig4973:2396..2432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4973 2397..2432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4973.12170.1prot_H-paniculata_contig4973.12170.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4973 1956..2396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4973.12170.1

>prot_H-paniculata_contig4973.12170.1 ID=prot_H-paniculata_contig4973.12170.1|Name=mRNA_H-paniculata_contig4973.12170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
PPPCGHKPDDGRWSAATLDPRPLSFSLLGCCCCCCRPPCCRLPSADILLS
VIARLPSLVLRCGKSRLSRERATLTLSLAPAPAPALLSRLVLLYSPTERA
NPPAIPPTIEEPEGASPRSCSAPLFLPVSPTSTFLPNRDFPAPQPH*
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mRNA from alignment at H-paniculata_contig4973:1956..2432+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4973.12170.1 ID=mRNA_H-paniculata_contig4973.12170.1|Name=mRNA_H-paniculata_contig4973.12170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at H-paniculata_contig4973:1956..2432+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCCACCCTGCGGCCATAAGCCGGACGACGGCCGTTGGTCGGCTGCCAC
CCTGGATCCGCGTCCTTTGTCTTTTTCACTACTTGGCTGCTGCTGCTGCT
GCTGCCGCCCTCCCTGCTGTCGCTTGCCATCTGCCGACATCTTGCTATCA
GTGATCGCGCGGCTGCCGTCGCTGGTCTTGCGTTGTGGTAAGTCCAGACT
GTCGCGAGAGCGGGCGACGTTAACACTCTCGCTTGCTCCTGCTCCCGCTC
CCGCACTCCTCTCGCGACTGGTGCTATTGTACTCCCCGACCGAGAGAGCG
AATCCTCCAGCAATACCGCCCACCATTGAGGAGCCAGAGGGCGCGTCTCC
GCGCTCATGCTCAGCACCACTTTTTTTGCCAGTATCCCCAACCAGCACTT
TCTTGCCGAACAGAGATTTCCCGGCGCCCCAACCCCACTGAGCCTTGCTC
TTTCCGGCGCGCACAGAATTCTCCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4973:1956..2432+

>mRNA_H-paniculata_contig4973.12170.1 ID=mRNA_H-paniculata_contig4973.12170.1|Name=mRNA_H-paniculata_contig4973.12170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig4973:1956..2432+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCCACCCTGCGGCCATAAGCCGGACGACGGCCGTTGGTCGGCTGCCAC
CCTGGATCCGCGTCCTTTGTCTTTTTCACTACTTGGCTGCTGCTGCTGCT
GCTGCCGCCCTCCCTGCTGTCGCTTGCCATCTGCCGACATCTTGCTATCA
GTGATCGCGCGGCTGCCGTCGCTGGTCTTGCGTTGTGGTAAGTCCAGACT
GTCGCGAGAGCGGGCGACGTTAACACTCTCGCTTGCTCCTGCTCCCGCTC
CCGCACTCCTCTCGCGACTGGTGCTATTGTACTCCCCGACCGAGAGAGCG
AATCCTCCAGCAATACCGCCCACCATTGAGGAGCCAGAGGGCGCGTCTCC
GCGCTCATGCTCAGCACCACTTTTTTTGCCAGTATCCCCAACCAGCACTT
TCTTGCCGAACAGAGATTTCCCGGCGCCCCAACCCCACTGACCGCCACCC
TGCGGCCATAAGCCGGACGACGGCCGTTGGTCGGCTGCCACCCTGGATCC
GCGTCCTTTGTCTTTTTCACTACTTGGCTGCTGCTGCTGCTGCTGCCGCC
CTCCCTGCTGTCGCTTGCCATCTGCCGACATCTTGCTATCAGTGATCGCG
CGGCTGCCGTCGCTGGTCTTGCGTTGTGGTAAGTCCAGACTGTCGCGAGA
GCGGGCGACGTTAACACTCTCGCTTGCTCCTGCTCCCGCTCCCGCACTCC
TCTCGCGACTGGTGCTATTGTACTCCCCGACCGAGAGAGCGAATCCTCCA
GCAATACCGCCCACCATTGAGGAGCCAGAGGGCGCGTCTCCGCGCTCATG
CTCAGCACCACTTTTTTTGCCAGTATCCCCAACCAGCACTTTCTTGCCGA
ACAGAGATTTCCCGGCGCCCCAACCCCACTGA
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