mRNA_H-paniculata_contig49726.12169.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49726.12169.1
Unique NamemRNA_H-paniculata_contig49726.12169.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5JJ06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ06_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.860e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = -1 
Query:   22 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWFK 147
            FDV T +  PA+  ADLGP+R+DE   DKPVR A+G L+W K
Sbjct:    5 FDVTTTAITPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK 46
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5KZ30_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ30_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.990e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = -1 
Query:   22 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWFK 147
            FDV T + +PA+  ADLGP+R+DE   DKPVR A+G L+W K
Sbjct:  370 FDVTTTALIPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK 411
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.040e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = -1 
Query:   22 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWFK 147
            FDV T +  PA+  ADLGP+R+DE  +DKPVR A+G L+W K
Sbjct:  276 FDVTTTAFTPAATDADLGPKRDDEPAADKPVREAIGCLMWTK 317
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.150e-7
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = -1 
Query:   22 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWFK 147
            FDV T +  PA+  ADLGP+R+DE   DKPVR A+G LIW K
Sbjct:  543 FDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLIWTK 584
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5JGJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ3_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.220e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = -1 
Query:   22 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWFK 147
            FDV T +  PA+  ADLGP+R+DE   DKPVR A+G L+W K
Sbjct:   23 FDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK 64
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.650e-7
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = -1 
Query:   28 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIW 147
            FDV++ S +PA+  ADLGP+REDE+  + PVR A+GS++W
Sbjct:   77 FDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMW 116
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5KGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.650e-7
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = -1 
Query:   28 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIW 147
            FDV++ S +PA+  ADLGP+REDE+  + PVR A+GS++W
Sbjct:    5 FDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMW 44
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5K179_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K179_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 6.950e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = -1 
Query:   22 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWFK 147
            FDV T +  PA+  ADLGP+R+DE   DKPVR A+G L+W K
Sbjct:   23 FDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK 64
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5JA80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA80_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.300e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = -1 
Query:   22 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWFK 147
            FDV T +  PA+  ADLGP+R+DE   DKPVR A+G L+W K
Sbjct:  206 FDVNTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK 247
[Close]
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.320e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = -1 
Query:   22 FDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWFK 147
            FDV T + +PA+  ADLGP+R+DE   DKPVR A+G L+W K
Sbjct:  193 FDVTTIAFIPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49726.12169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ06_9PHAE3.860e-757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ30_9PHAE3.990e-757.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXE8_9PHAE4.040e-757.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE4.150e-759.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGJ3_9PHAE4.220e-757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBH1_9PHAE6.650e-755.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGY9_9PHAE6.650e-755.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K179_9PHAE6.950e-757.14Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA80_9PHAE7.300e-757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXU1_9PHAE7.320e-757.14Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49726contigH-paniculata_contig49726:944..1282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930464.6330621-CDS-H-paniculata_contig49726:943..12821622930464.6330621-CDS-H-paniculata_contig49726:943..1282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49726 944..1282 +
1691481303.5958445-CDS-H-paniculata_contig49726:943..12821691481303.5958445-CDS-H-paniculata_contig49726:943..1282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49726 944..1282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49726.12169.1prot_H-paniculata_contig49726.12169.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49726 944..1282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49726.12169.1

>prot_H-paniculata_contig49726.12169.1 ID=prot_H-paniculata_contig49726.12169.1|Name=mRNA_H-paniculata_contig49726.12169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MSGLVIPLKPYQTPNSRAHRLVRQILILPPRPKICLLRRRKIRLGFHVER
LTTVSTNVRRVMRTTPLTISRQNAQPRYHMSSPLVVWNSALNAANRESHF
TLLPATITSSTRT
back to top

mRNA from alignment at H-paniculata_contig49726:944..1282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49726.12169.1 ID=mRNA_H-paniculata_contig49726.12169.1|Name=mRNA_H-paniculata_contig49726.12169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig49726:944..1282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGGTCTCGTCATACCACTTAAACCATATCAAACTCCCAACAGCCG
AGCGCACAGGCTTGTCAGACAAATCCTCATCCTCCCTCCTAGGCCCAAGA
TCTGCCTGCTGAGACGCAGGAAGATTAGACTCGGTTTCCACGTCGAACGT
TTAACGACAGTATCAACGAATGTCCGTCGCGTGATGCGGACAACTCCCCT
CACTATATCACGCCAAAATGCACAACCCAGGTACCACATGAGTTCGCCTC
TCGTGGTTTGGAACTCCGCCCTCAACGCCGCAAACAGGGAATCGCACTTC
ACACTTTTACCAGCAACAATTACATCATCTACACGAACA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig49726:944..1282+

>mRNA_H-paniculata_contig49726.12169.1 ID=mRNA_H-paniculata_contig49726.12169.1|Name=mRNA_H-paniculata_contig49726.12169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig49726:944..1282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGGTCTCGTCATACCACTTAAACCATATCAAACTCCCAACAGCCG
AGCGCACAGGCTTGTCAGACAAATCCTCATCCTCCCTCCTAGGCCCAAGA
TCTGCCTGCTGAGACGCAGGAAGATTAGACTCGGTTTCCACGTCGAACGT
TTAACGACAGTATCAACGAATGTCCGTCGCGTGATGCGGACAACTCCCCT
CACTATATCACGCCAAAATGCACAACCCAGGTACCACATGAGTTCGCCTC
TCGTGGTTTGGAACTCCGCCCTCAACGCCGCAAACAGGGAATCGCACTTC
ACACTTTTACCAGCAACAATTACATCATCTACACGAACAATGTCAGGTCT
CGTCATACCACTTAAACCATATCAAACTCCCAACAGCCGAGCGCACAGGC
TTGTCAGACAAATCCTCATCCTCCCTCCTAGGCCCAAGATCTGCCTGCTG
AGACGCAGGAAGATTAGACTCGGTTTCCACGTCGAACGTTTAACGACAGT
ATCAACGAATGTCCGTCGCGTGATGCGGACAACTCCCCTCACTATATCAC
GCCAAAATGCACAACCCAGGTACCACATGAGTTCGCCTCTCGTGGTTTGG
AACTCCGCCCTCAACGCCGCAAACAGGGAATCGCACTTCACACTTTTACC
AGCAACAATTACATCATCTACACGAACA
back to top