mRNA_H-paniculata_contig4970.12166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4970.12166.1
Unique NamemRNA_H-paniculata_contig4970.12166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4970.12166.1 vs. uniprot
Match: D7FYD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.410e-22
Identity = 79/211 (37.44%), Postives = 94/211 (44.55%), Query Frame = 2 
Query:  293 MDSSYDLRSALADALPAAGPSRATVKAMDDVGFKSDPKNNDMKQLFVCLDLASTSGANPGGEGTALGDDGLLTMGAGSGIAAPSASQTLLDYRREKKAAQEAAEAETAKRLAAGSGKEFDKKISLSSSPARGVGLARAAGVGGQELDEAASDERHLRKVNQSRTAAKMSTKQKRRIKSGKQHGTSYEEKYEGKVMNKTKRKGRMAAMKQMY 925
            MD+SYDLRSALADALPAAGP+RA VKAMDD+GFK+DPKNNDMK+LFV LD+A                                                +A                                         + L  A  D   L++ N S+TAAKMS              T+YEEKY GKV+N++KRKGRM AMKQMY
Sbjct:    1 MDNSYDLRSALADALPAAGPTRAAVKAMDDIGFKADPKNNDMKELFVGLDIAQQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQA-----------------------------------------KNLLAAGKDPASLKRANLSKTAAKMSXXXXXXXXXXXXXXTNYEEKYAGKVVNRSKRKGRMLAMKQMY 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4970.12166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYD9_ECTSI1.410e-2237.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4970contigH-paniculata_contig4970:1149..4641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003660.1
Exons3
Model size2265
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4970.12166.1prot_H-paniculata_contig4970.12166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4970 2486..4349 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930464.1348276-UTR-H-paniculata_contig4970:1148..24851622930464.1348276-UTR-H-paniculata_contig4970:1148..2485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4970 1149..2485 -
1691481303.4134839-UTR-H-paniculata_contig4970:1148..24851691481303.4134839-UTR-H-paniculata_contig4970:1148..2485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4970 1149..2485 -
1622930464.1996386-UTR-H-paniculata_contig4970:4349..46411622930464.1996386-UTR-H-paniculata_contig4970:4349..4641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4970 4350..4641 -
1691481303.4467015-UTR-H-paniculata_contig4970:4349..46411691481303.4467015-UTR-H-paniculata_contig4970:4349..4641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4970 4350..4641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930464.1490228-CDS-H-paniculata_contig4970:2485..26471622930464.1490228-CDS-H-paniculata_contig4970:2485..2647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4970 2486..2647 -
1691481303.422303-CDS-H-paniculata_contig4970:2485..26471691481303.422303-CDS-H-paniculata_contig4970:2485..2647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4970 2486..2647 -
1622930464.1610382-CDS-H-paniculata_contig4970:3257..34351622930464.1610382-CDS-H-paniculata_contig4970:3257..3435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4970 3258..3435 -
1691481303.4299676-CDS-H-paniculata_contig4970:3257..34351691481303.4299676-CDS-H-paniculata_contig4970:3257..3435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4970 3258..3435 -
1622930464.1772416-CDS-H-paniculata_contig4970:4053..43491622930464.1772416-CDS-H-paniculata_contig4970:4053..4349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4970 4054..4349 -
1691481303.4386203-CDS-H-paniculata_contig4970:4053..43491691481303.4386203-CDS-H-paniculata_contig4970:4053..4349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4970 4054..4349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4970.12166.1

>prot_H-paniculata_contig4970.12166.1 ID=prot_H-paniculata_contig4970.12166.1|Name=mRNA_H-paniculata_contig4970.12166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MDSSYDLRSALADALPAAGPSRATVKAMDDVGFKSDPKNNDMKQLFVCLD
LASTSGANPGGEGTALGDDGLLTMGAGSGIAAPSASQTLLDYRREKKAAQ
EAAEAETAKRLAAGSGKEFDKKISLSSSPARGVGLARAAGVGGQELDEAA
SDERHLRKVNQSRTAAKMSTKQKRRIKSGKQHGTSYEEKYEGKVMNKTKR
KGRMAAMKQMY*
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mRNA from alignment at H-paniculata_contig4970:1149..4641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4970.12166.1 ID=mRNA_H-paniculata_contig4970.12166.1|Name=mRNA_H-paniculata_contig4970.12166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3493bp|location=Sequence derived from alignment at H-paniculata_contig4970:1149..4641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATGATGTACTTTCGCATGGGAATTCGTGTACCGTAAAGTTTTATGCAG
TCGAACTATCACTAACAAAAACCAGCTGGAGATAAAAGGTTTTGGGTCAG
GAGCGGGGGAGCTCTGCAGTGTTTATCCCTGCTGCCGTTCACGCGAACCC
CCTTTACATCAGCACGACGGAGCTGCACTTCACAACAGTATAGACTGACG
GTGATATACTGCTCTCCTGTACTCCACTCCACTGTAGTGTATCGTCTGTC
TGCACGGCTACTGAGCAGTAGTAGCTCAGGAACTGCATAGTTATGGACTC
GTCGTACGATCTGCGGTCAGCATTGGCCGATGCCCTGCCGGCGGCTGGGC
CGTCCCGTGCAACCGTGAAGGCGATGGATGATGTCGGCTTCAAGTCAGAC
CCAAAGAACAATGATATGAAGCAGCTGTTTGTGTGCCTGGATCTCGCCAG
CACTTCTGGTGCCAATCCTGGCGGCGAAGGGACAGCGCTCGGTGACGATG
GCCTGCTCACAATGGGGGCAGGGAGCGGGATAGCGGCACCATCTGCCTCG
CAAACTTTGCTGGATTACAGGAGGGAGAAGAAAGCAGCGTAAGTGGGTGT
TCTGTATGTTGGTTTGATTTGCTGACTGTGCTCTATTGTCTCCTCCCATA
CAAAATGTACAGTGATATACCATCATTGCATGTTTGGTGGTGTGGCAGAC
ATTCTACCGTCGTGTGCTGGCTTTTGGTTGGTTCATGAACTTTTTAAGGG
ACCTCGGCCCGCCTTGCACAAACTGCATTCAATTCCACACAGTCAGGAGC
ACAGCTCTGCCCACTTTACCGATTACATCGTATTACTCAGTTTTTAAGAT
CTCTTATCACTCCAACCGCCGTACCCTCTTTCATGGGCATGAGTTTTCAA
TCGTGCTCTTTCTCAGTACTGCAGTGTAGTTTTACCCCTCGCTAAGTCCC
TCCATTGTAGGCAGGCATGCGGCAGATTGCCCCACATGGATACCTAAGAC
GCGCGGTCAGTGACCGCGGAGTGCAGTGAGCCGACGCATTACAGTGCTCA
TTTCGATGAGAAAATGTGACAGTACGTGCGACAGGAAAACTTCTTTCCAG
CATCCCTATTTGAAAGTCGGGGAATTGGCAAAGAATCTTCGCCTATTTTC
AAGGCTTCATCCTGTTCGGGGGAATGAATGCCTTGCTTTCGTTAAACATT
CAACAGGCAAGAAGCGGCGGAAGCAGAGACAGCGAAGCGATTGGCGGCCG
GATCGGGCAAAGAATTCGACAAAAAAATATCTTTATCATCATCACCAGCG
AGGGGCGTGGGGTTGGCGCGAGCCGCGGGAGTTGGGGGGCAAGAATTGGA
CGAGGCTGCGAGTGACGAGCGGCACTTGCGAAAGGTCAGCACTGTACTCT
CCGCCGTAATCTTTGGTACTGTAAATTCCATCAACCCCCGAAGCCCATGC
TTGACGACAATTAGTCAAGCTTTTCTGCTTCCGTCCTGCTACTATTTTTC
CATCTGTCCTTGTGTCTATGTTTTGTTCTACATATCGACGCGTTGCTTCC
TTCCTCACAATACTCTCCACAAACTGAGATGCCGGCGAGCCCAACCGTAT
ATTCCTCACACACCCGGGATTCCGTGCAGAGTTCAGCGATTTGTTTTGGC
GTGAAAAATGAAAATTGTATTGTATAGATTAATTATAAGCAAAACCCGCA
GTGATGGAAATCCTCAACCGTTTGGATGGAACGCTTCCATATCTCAAAGA
TATATTTGTCGCTCTAACGCTATACCTAAGCATTTTTGAATTTCCCACCT
TGGATCATTTAGTCGACGCTGACGCAATTCAGTCAGTCCGTCGGCACGTG
TTACTACTTCGGGGGTTTGGTTCAACTCTAGAGGCAATGACTCGTGGTGG
AGAAGGGATTTGTCACACTTTTTAGGCGGCAGCAACTTGATCATAATTTC
CAAACAGTACGTGTTTTCCTTCTCTTTTTTTTTGCCCTTAACAGGTAAAT
CAGAGCAGGACCGCCGCGAAGATGAGCACGAAACAGAAGCGACGGATCAA
GAGCGGCAAGCAGCATGGAACATCATACGAGGAGAAATACGAAGGCAAAG
TGATGAACAAGACGAAGCGAAAAGGGAGAATGGCTGCTATGAAGCAGATG
TACTAATTTTGTTTCTTTTCATGTTTCCCTCTTCGTTGCGGATGTGAGTG
GACATATCGTATCCATCATCTCCTGAATATCCCCCTTGTTTGGGTATTTG
GAAGGTGTCTGGGTGAAAAAATGTTCTCGTTTCATTTGAAACGGGAGTGG
AATATATCTGAGGCTAAAAGTCATGTCGTTTTTCTTTTGTGCATTATATA
CTCTTATTCTGCATGTCGGGAAACTTGGTTAGTAAGGGGCGAGGGGAGGG
GGGTCGGATTTATTATGAACATGTTCAGTATCATCATCTTCCCCTTTCTC
CATGCTTTTTTTCCCACAGAAGACACACACAATTTCCCTTTCATATTACG
ATCGTTGCGATGAGGGTAAAAATAAACGTTTGACTGTATGCTAGAGCTGG
AAAGTTAAAAGGATGTGACAGCTCACCTACTGTTTGTGGAAATGCCAGAG
TAGGAGCGTAAAGAATGTATGCTTGTTGTGGGGGACGGACATTATGGGGG
AAATATGTGGGGAGAGAAGCCGCAGGCGTGAAGATTGCAAAATAACTGAG
AGGTTGTGAATATAACGTTGCTTTGAGTGCGCTCGAAAAAAAAAAATATA
TATATATTCAACCCCCGGAAGGCTAAGGCAACAACCTTTCTCCGGCGTTT
TCATATTTGCGTATTTTATTGATGTATTTTAACATTTCCTTTAACAGAAC
AGAGTTATTTATTCTTGTGCGGTGTAGGTGCAGCCCCTAACCCTAGCATA
CTGTTGTTGAGTACGTTCTCTTGTTCTACCCTATCTGAAGAACTGTTCGT
GTGTGGGGTACGAAACACCATGCAGAATGAGCAAGAAAATGCACGTTTGC
CTTGTCCTACAAAACAGGCGAAGGAAAGACAAATATCGGTCATGTAAGCT
GCAACACTTTTGCCTACTATTCAACTTGCCCCATATTTCGAGGTGTCTCA
ATCAATTTACATCCGCAAAATATGAGATAAGTGCGTGGAGCAGGAGAGAA
TTGATAGTTTCTCTTCCGACGAAACTTTGGGCACATCTCATATTCTCCTC
TTACACTCGCACACCCACAATTCATGACGTATCGTGGGCGAATTATATTC
TCCCCTACCGGGTGATCCATCTTCTAGATGAAGAATTATTGTTAACTCTG
GTGTGAACACCTTTTCTTGTGGACGTTTTCTGCAAGTCATGCACTATTTT
AGCCCCTGATTCCCTCGGGTTTTTTTCCCTTCTATTTCCATGTCCCGTTT
TCCAATACGATAAAGCGATCCTCTGCATATACAATATCCTTGCACCTTGT
GTCTTATTTATATATTATTATGGCAAAAGCAGGCGTGTTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4970:1149..4641-

>mRNA_H-paniculata_contig4970.12166.1 ID=mRNA_H-paniculata_contig4970.12166.1|Name=mRNA_H-paniculata_contig4970.12166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig4970:1149..4641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTCGTCGTACGATCTGCGGTCAGCATTGGCCGATGCCCTGCCGGC
GGCTGGGCCGTCCCGTGCAACCGTGAAGGCGATGGATGATGTCGGCTTCA
AGTCAGACCCAAAGAACAATGATATGAAGCAGCTGTTTGTGTGCCTGGAT
CTCGCCAGCACTTCTGGTGCCAATCCTGGCGGCGAAGGGACAGCGCTCGG
TGACGATGGCCTGCTCACAATGGGGGCAGGGAGCGGGATAGCGGCACCAT
CTGCCTCGCAAACTTTGCTGGATTACAGGAGGGAGAAGAAAGCAGCATGG
ACTCGTCGTACGATCTGCGGTCAGCATTGGCCGATGCCCTGCCGGCGGCT
GGGCCGTCCCGTGCAACCGTGAAGGCGATGGATGATGTCGGCTTCAAGTC
AGACCCAAAGAACAATGATATGAAGCAGCTGTTTGTGTGCCTGGATCTCG
CCAGCACTTCTGGTGCCAATCCTGGCGGCGAAGGGACAGCGCTCGGTGAC
GATGGCCTGCTCACAATGGGGGCAGGGAGCGGGATAGCGGCACCATCTGC
CTCGCAAACTTTGCTGGATTACAGGAGGGAGAAGAAAGCAGCGCAAGAAG
CGGCGGAAGCAGAGACAGCGAAGCGATTGGCGGCCGGATCGGGCAAAGAA
TTCGACAAAAAAATATCTTTATCATCATCACCAGCGAGGGGCGTGGGGTT
GGCGCGAGCCGCGGGAGTTGGGGGGCAAGAATTGGACGAGGCTGCGAGTG
ACGAGCGGCACTTGCGAAAGGCAAGAAGCGGCGGAAGCAGAGACAGCGAA
GCGATTGGCGGCCGGATCGGGCAAAGAATTCGACAAAAAAATATCTTTAT
CATCATCACCAGCGAGGGGCGTGGGGTTGGCGCGAGCCGCGGGAGTTGGG
GGGCAAGAATTGGACGAGGCTGCGAGTGACGAGCGGCACTTGCGAAAGGT
AAATCAGAGCAGGACCGCCGCGAAGATGAGCACGAAACAGAAGCGACGGA
TCAAGAGCGGCAAGCAGCATGGAACATCATACGAGGAGAAATACGAAGGC
AAAGTGATGAACAAGACGAAGCGAAAAGGGAGAATGGCTGCTATGAAGCA
GATGTACTAAGTAAATCAGAGCAGGACCGCCGCGAAGATGAGCACGAAAC
AGAAGCGACGGATCAAGAGCGGCAAGCAGCATGGAACATCATACGAGGAG
AAATACGAAGGCAAAGTGATGAACAAGACGAAGCGAAAAGGGAGAATGGC
TGCTATGAAGCAGATGTACTAA
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