mRNA_H-paniculata_contig497.12165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig497.12165.1
Unique NamemRNA_H-paniculata_contig497.12165.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig497.12165.1 vs. uniprot
Match: A0A6H5KJV3_9PHAE (PsbP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.960e-13
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 MHNLGVIAARGSTLFTVTVVAPEESW--RNDRGEKYRQLARSFRLTY 135
            M N+GV+AARGSTLFTVTV+APEESW  +  RGEK+RQ+A SFRL +
Sbjct:  557 MRNVGVVAARGSTLFTVTVLAPEESWGGKGGRGEKFRQMANSFRLAF 603
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BLAST of mRNA_H-paniculata_contig497.12165.1 vs. uniprot
Match: D8LPY6_ECTSI (PsbP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY6_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.400e-13
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 MHNLGVIAARGSTLFTVTVVAPEESW--RNDRGEKYRQLARSFRLTY 135
            M N+GV+AARGSTLFTVTV+APEESW  +  RGEK+RQ+A SFRL +
Sbjct:  461 MRNVGVVAARGSTLFTVTVLAPEESWGGKGGRGEKFRQMANSFRLAW 507
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BLAST of mRNA_H-paniculata_contig497.12165.1 vs. uniprot
Match: A0A4D9CU31_9STRA (PsbP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU31_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.810e-5
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 MHNLGVIAARG--STLFTVTVVAPEESWRNDRGEKYRQLARSFRLT 132
            +H+L VIA R   STLFT+TV+APE  W  DR ++ R++A SFRLT
Sbjct:  226 LHSLSVIAPREEESTLFTLTVLAPERRWE-DREKELREVASSFRLT 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig497.12165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJV3_9PHAE3.960e-1370.21PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LPY6_ECTSI5.400e-1370.21PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9CU31_9STRA2.810e-556.52PsbP domain-containing protein n=1 Tax=Nannochloro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig497contigH-paniculata_contig497:36647..36784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue3.1e-10
Seed eggNOG ortholog2880.D8LPY6
Preferred namePSBP5
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
EggNOG free text desc.PsbP domain-containing protein 7 chloroplastic
EggNOG OGs28JMB@1,2QS0I@2759
COG Functional cat.S
BiGG ReactioniRC1080.CRv4_Au5_s2_g9294_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930464.0943096-CDS-H-paniculata_contig497:36646..367841622930464.0943096-CDS-H-paniculata_contig497:36646..36784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig497 36647..36784 -
1691481303.4028947-CDS-H-paniculata_contig497:36646..367841691481303.4028947-CDS-H-paniculata_contig497:36646..36784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig497 36647..36784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig497.12165.1prot_H-paniculata_contig497.12165.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig497 36647..36784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig497.12165.1

>prot_H-paniculata_contig497.12165.1 ID=prot_H-paniculata_contig497.12165.1|Name=mRNA_H-paniculata_contig497.12165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MHNLGVIAARGSTLFTVTVVAPEESWRNDRGEKYRQLARSFRLTY*
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mRNA from alignment at H-paniculata_contig497:36647..36784-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig497.12165.1 ID=mRNA_H-paniculata_contig497.12165.1|Name=mRNA_H-paniculata_contig497.12165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig497:36647..36784- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACAACCTAGGAGTGATAGCCGCGAGGGGGTCGACTCTATTTACCGT
GACAGTCGTAGCACCTGAAGAGAGCTGGAGGAACGACCGCGGAGAGAAAT
ACCGGCAGTTGGCGAGAAGTTTCCGCCTGACTTACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig497:36647..36784-

>mRNA_H-paniculata_contig497.12165.1 ID=mRNA_H-paniculata_contig497.12165.1|Name=mRNA_H-paniculata_contig497.12165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig497:36647..36784- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACAACCTAGGAGTGATAGCCGCGAGGGGGTCGACTCTATTTACCGT
GACAGTCGTAGCACCTGAAGAGAGCTGGAGGAACGACCGCGGAGAGAAAT
ACCGGCAGTTGGCGAGAAGTTTCCGCCTGACTTACTAAATGCACAACCTA
GGAGTGATAGCCGCGAGGGGGTCGACTCTATTTACCGTGACAGTCGTAGC
ACCTGAAGAGAGCTGGAGGAACGACCGCGGAGAGAAATACCGGCAGTTGG
CGAGAAGTTTCCGCCTGACTTACTAA
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