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Homology
BLAST of mRNA_H-paniculata_contig4965.12158.1 vs. uniprot
Match: D7G101_ECTSI (Tudor-knot domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G101_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 2.000e-14 Identity = 44/102 (43.14%), Postives = 53/102 (51.96%), Query Frame = 1
Query: 1 RLDANLVFTGVSWWDAKVMAVELNPDVPVGDQRPAGSALSGETLAHHGDGGAGKMRVVGGKLSGANDGWDVMLLPRPVLYRVHYRSWSRRWDEWVEPSMLRW 306
RLD +VF G+SWWDAKV+AVEL +P T DG G++ G G RP + VHYRSWSRRWDEW+EPS +RW
Sbjct: 82 RLDDCMVFVGLSWWDAKVVAVELGESLPC-------------TTPDDEDGEDGRVDRRGATCMGER---------RPKRFLVHYRSWSRRWDEWLEPSRVRW 161
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 758 |
| Cds size | 483 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4965.12158.1 >prot_H-paniculata_contig4965.12158.1 ID=prot_H-paniculata_contig4965.12158.1|Name=mRNA_H-paniculata_contig4965.12158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MSGWSRQCCVGNMVRGIRPRGQSCRRDFRALVPGLVVLPRWQPGRKRNSA STNRKRHLSGAWLDARVRKVAHNSVCLSDMSKSSQLMWVCPDRIRAKPAA PPTIAAIARKAYGGAIPAGVEHATDTMARNEQRGGSLSRVLAFAGRRGGA RGGTLDNMSIR back to topmRNA from alignment at H-paniculata_contig4965:4070..10728- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4965.12158.1 ID=mRNA_H-paniculata_contig4965.12158.1|Name=mRNA_H-paniculata_contig4965.12158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6659bp|location=Sequence derived from alignment at H-paniculata_contig4965:4070..10728- (Halopteris paniculata Hal_grac_a_UBK monoicous) CGTCTGGACGCGAATCTGGTCTTCACCGGAGTGTCGTGGTGGGACGCCAA
GGTAGGGACATTGTTCCTTGCCCCCGCCCCGGGTATGACGGGGGGTACGT
TTGGATACCGTAATGGGGTGGGAATCCCAGGGACCCCTCCCCCCCCTCTC
CTTTGAAGACTGACTAGGATCAGTTGAGTACAGTAGTGCATCTGGGACCT
GTGCTGGCTCGTAAGCGTACTTGGAAGCAGTGCTTCCGGTTGAGAGAAAT
AACTTTGGGGGGGAAGTCGCAATTGAAGTATGACCATATTAATGGAAGAC
TCGAGCAAATTACCAGGGTTCAGCAGGCTTCTGCTGCTGTATATATTCCC
ACAGTACTCACTGACATCAACATGTCGCTGTTGTAGGGAGGGAAAATATT
TTTTGTCAAATGGCAATAGCAGGGGGTGGTGAAAATCTCGACTGACTGGC
CCCTCTCAACAAATGGGTCATTCGTTCACAAGTGAAATTTTGGGGGCGTT
TAGTGATTGACCGTGCATCCTTTTTTTTTGCTCTGATGAACGTTGGTTTA
TTCGTTCGTTTTGTGAAAAACAAACAGGTGATGGCCGTCGAGCTGAACCC
CGACGTTCCCGTCGGCGACCAACGCCCTGCCGGAAGTGCCCTTTCGGGTG
AAACCCTTGCCCACCACGGTGACGGCGGCGCGGGTAAAATGAGGGTGGTG
GGGGGCAAATTATCTGGGGCGAACGATGGGTGGGACGTGATGCTCTTGCC
GCGGCCCGTGCTCTACCGAGTGCATTATCGCTCGTGGAGCCGGCGATGGG
ATGAGTGGGTGGAGCCGTCAATGTGAGGAGAATAGTGTTGAACGGCTTCA
CTGCCCCCCCAGATGAATGCTAATGCTTGGAAAATGGTTAACATATAGTC
GAACGTCTTACAAAGTGTTGGTTTGAGTTTCAGCATGTACGGGCACATAT
AATCAAGTACTCACCACCTGGTTTATTCGTTTTATAACATTTAGTCATTG
GCCAGAGTCATGGATGGTCCTAGTCCTGGTCCTGGTCCTGGTCCCGGTTC
TGGGCTCATGAAATCGATGTGCTTGCTCATGCTGAAGCTTGAGGCGACTA
TTTTTGTTTCAATTCTCGTCTAAACAATTTGTAGAATTTGTATTCGTCTC
ACCGGGGGGGAACAGTTGTTGTTCTTGTCATCATCCAATGTTGTCATTGT
CATCTTTCCAACGTGGTTATTGTCGGAAATCCCAATGTTGCTAAATGTCA
TCACCCAATGTTATTATTGTCCCCGCCCCGTGTTGTCGTTGCTTTCAGTG
TGTGAGGGGGGGGGGGAGGAAGAGATACTGAAGATAGTGAAGGCTGAGCA
AGTAGCAGAGCTATGTGCTCTGCCAGTGTCGGTGGCATTTTTGCCTACCC
AAGTGAGGATTTAACGCCTCGTGTTCGCGTTGAATGTTATTTTCGAGGGT
TGCAAAGAAAATACAGCCTTCCAATGCTGTGGCGAGTTACGCTTGCAAGG
GCAAAACAAGGCATTGTGATTTTATATGTTTCATGCTCGAAGCAAACTTG
CGGCCGGCAGCATACCAATTTTTCACGGCACCGATTGTGGTACACAAAAC
GTCAGCCTCTTACAGTTTGTTTGATTTGTTTGTTTGGTTGATTTGTTTAT
GAAATCAATGTCATTACTCAGCACCGTTAGCTTCTTAAGTCTAGTGTACA
TCCAGCATTGATTGAGGATTACAGGCACCCCCACCCCCTCCCCGCGAGCA
ATTCACGTGCCCGGATGTACGCAACCTGATACCGCAGTTTATAGTATATA
CCACGTACTATATATACATATATATATATATATATGGAATAAAATGTAAA
AATGCCGCAATAGTTATCATCTGGCTCGTGCAACGTTGCAAGCTAACTTC
GCAGTGCTGTTTTCAGTCTTAAGATAGTTCCTTCAAGTCTGTCACTCGTC
GCACGCCCTTTACTTCTCTTGACTGCACCTGTTTCGTTGTTGCAGAGCGT
AGGGCTGAAGGTCGAAGCCTTCGGTGTATTCTTGCTCCACGTGTCAAGAT
TTTGTGTTTCGGTTGTTTGTTGGCGGGATAGATGTTTATGTTACTAAACA
ATTCACATATATATGTATGCATGTATGTGTATATATACACACAATGTAAA
TCACCCTTGCAGGCATTGAATGTTGAACAGTTTTGCTCATTTGAAATTCC
CGAATGTTTTGGGGTGCTCGAGACACACACGAAACATCTTGCTGTTTGGA
AAGAAACGGTGGTGCAGGTTCATCGGCAGATATATCCGTTGGACAACACG
AGGCTTTCTTTCCTCTTTTTTTTTCGAGCACTGGCGGTACAAGGTAATCT
TCCGGGGTAATAGACATAACCAACGGCGGTATTTCCCTGCTAAACATGCC
CCCTGCCCCTTCCCCGCGCGCGCACGCGCGACCCGTACCCTGACATGAGC
GCAAGTCATCACTCTCCTTTTTGTGTCACTTTTTTTGTCCCCAGGAGACC
AAGGGCAAAACCTTTACTGGCACATGCTTACACCGAACAATGACGTCACA
GCGTTGCTATTTTACCTGGGTTCACTCATGATGTCTCAACCATTTTTTTG
TACCTGATCAATATCCCATCTCCGTAAATTACACACACGATTATGTGCCC
TCCTGCTCACTTTCCACTTCCTCCTCCGCCGCCGCCGTGTCCGCGGTTCC
TCCACTCCTGAACCCCGTTTCCAACATGCTACCCCACCTCTCCGCTGGAA
ACCCGAAACAGGCTGCGTTGGAAACATGGTGCGTGGAATTCGTCCGCGAG
GACAGTCGTGTCGCCGCGATTTTCGCGCGTTGGTACCGGGACTGGTCGTG
CTCCCGCGATGGCAGCCAGGGAGAAAGAGAAATTCAGCGTCAACCAACCG
TAAGCGACACCTTTCGTTTTTTCTTCTCCTTTCTATTTTCTTGTTCTTAT
CTTATCTCTATGCGTAATTTTTAATTTTAAAGCCCCCTATACAGCTGATG
GACCACTTACGGGGATCTCATCTGATCAGTTTTTTCATCGTTCAACAGGT
TTCATCCTCGCGGACGGATACAAATACTTTAAGCAGCATTCGCGACGCAA
ACGAAACAACAAAAATATATCCTCAGGGCCCGGAATGTACTTACACGTGG
CGTATAGAATAGAGTGTTGTTTTTCAACCCCTGTATCTGTTTCACCATGT
ATTATTCCTGATAGTCATAGATAGTCCGGGGGTACATTGAGTGAATCTAT
TCATCCCCCTGAACCTTTATGAGCGTGTTTTTTTCTAAATAGTAAATGTT
TGGATTCATCCGGGTCGGGGAATCAAAGATTTATACGTCTGCACATGTAT
CTTTGAGTTAATACTTCCAAGTCCAATAGTTTGGAATATAATAGTGGCTG
CACCTGACGTGAGTGCCGATGTTACCACTCCCCCTTCCCTATCTATTGGG
GTCCGTTAAGAGTCCGTCCCAGTCTGAAATCACGTGATATCCCATCCTTC
ATTGTCTCCTTGGACCCGTCTTGCATCTCTTTATACCATCGGCTTTCGTT
CCCAAGTGCTGCTCATGACCTGCTCTGTTCGTTTCGCGGAAACTCGCCAA
TCTCTTTGTGCCACTCCTCTGCACTGGTCCCTTTCACCGTCGAGCTTCTT
ACTGATCCAGATGCTTTGGCCATTACCTCGAAAACGTTCCACTGCTGGAT
AGCACTTTTGCCGCTAGTAAATTTAGTGCCAGCATGAAACTCATGAAATC
ATCCATGTACTACATGGGTCGGCGGCGCTGCCCTGCCAGAGCAGAAGCTT
GCTGGGGACGAACCGCCCCATGTCGCCATTTACCCAAAGGCGACCTTATT
TTTGAACGGGATGACCACCTCCGTGTTGGCTACCATGCGTGCCCCTGCCG
CCCGCCCCCCTCCCTCCTCCGTCGACCATGATACTTGATTATGTCAACTA
CGAAAGGAACTCGCTGCCCACCAGCCAACCCCCCCCCAACCAAAGCCTAT
CCTATCCTGCTCCATCTGCCGCTCAGCGGTACTACTGCGAACCCTAGGGT
AGCGACGGAATAGGGTGAGCAGGTTACGATGAATGTCTCAATCAATTCTC
GATTTCCGATGTCTTCATTGTAAATCGAGAAGTGTCTTGGGAACTGGATG
AGTGAGCAGAGCTCATGACTGCTCTCGATGTCTTCTATTTTCGGAGGATT
GATTCTCCCCCCGCGAGGACCGATTTTCAAAGAACGTTCTCCAAATAATA
AATGGCTGATTTGAGTTGCATGTACGATGGGCTCCGGCAATATGAAATAT
CCCAATCGAGTTGGCACTCGATTTACAGGAATTATTAACTCGACGACGTG
AGAAATAAAACGGCGAAAGTTCAAGTGTCTGGGTTGTGCAGCGTTGCGAG
CTATATATAGACTTGGCGGGGTTTGTTTTTCGGTCTCAGCGTCATCCAAA
TATTTCGCACAAGATCCTGTACATGTGCATATATACGCTCTTGTGTATAT
ATATTAGTCACTTGTATTTTTGCAAGTGTCAACCACACGAAGTTCCTACA
TGGCTCCGGACTGAGGATAATTTAGACAATCTTTACCCTCAACACATCGA
AAATGGCGTAGGAATTCTCCGAACCAAGGTACCTGCAATCTTCCCGACGA
TGGGACGGCCGTTGCCTTCTGCGATCGTGTTGCTCGATTTTTCTGTCTCC
TCTATTTCCTCAGGGTGGAGCTCTATTGCCATGGCGATATGGCCAGTGGT
GCTTGGTTGGATGCTAGAGTGCGGAAGGTGTGTACTCCACTTGCCAATTT
ATGAATGTACTACTCTTGCCAAGTATTTCTTGTTGCTCTTTAGTCTCTTG
CTAGTTCTAGTGCGATATGCAGGGTAGTAGTGGCGTGATTGCGTGCCGCC
ACATACAGTGCTGTTGAATCACCGGGCTGTGCGAGGTGCGGGTGGCGGCG
GAGAACCTGCGTTGCTGCTTGTAATCAAAGACTTGTGAAACGTTACTTCT
ATCTTTGCCTGCAGTGTTTTCTCACGCGTCCGCACCCAATGGGCTTCAAA
CTGATTCAATAAGGAGTCTTGAGTCTTGCCTCGCGAGATCTCTCATGACG
CCTTTTGTCCTTTTTTTCAAATGGACTAACTGACCCCTCGGAAACACGCG
GCCCGAGCACAGTCCGAGCACCAAATATCCCTGCTTGGTTTGAGGGCGGC
TGCCGAACCGGGATCCACGCCATCACGAACACCCGATATGCTGTGCGTCC
GACACTTAACGCTCGAATAATATTCAGCCACAGTAGTAGTGTTAGTGCAC
ATAGCTAGTATTCGATTGAACTTTAAATGTAGCTTACGAAAAATCTACCA
CAGCGTCCCCGGTATGCCTTCTTTACAACAATTTCGGTTTTGCCGGTTCG
CACCGTGCCCATGTATGCGGAGTTGCTAAATAGACGAGGAAAAAGAATGT
AGTGAGATCTCTCCCTTCCCAGGTCGCCTTGCCTTCACGAAACACCCGCC
AAAGTGATCGTCCCGCCCGCCTGCCCACCGCCTCTCCTCGGCTTCGTCGG
TTGCAAGCCAGGTAGCGCACAACTCGGTGTGCCTTTCGGACATGTCCAAG
TCGTCGCAATTAATGTGGGTATGTCCGGATCGGATTCGTGCCAAACCTGC
GGCGCCACCCACCATCGCTGCCATCGCCCGAAAGGCTTATGGTGGCGCTA
TTCCTGCAGGTGTGGATGCACGTGCATATGTGTATAATTGTATTGCTCGG
TTCATCTCATACCAGCGTGGAACCTATTAGATTATGTGATTATAAATTAA
CATGAAATTGAATTTTTGAACTTGCACTGTTCGCTCGAGCCCTCTTGTGG
TTGGCCGGTGTCAATTCATACATGCATACGACCACCGTTATCACCAGAAT
GCAATCTCCATGTACGTTGTACCATATCGCTGTTTGTCGAGCCGATAAGC
TCTCAGAGTCGGAGGGCGCGAGACATGCATGCACTCCCTGAATAGCTCAC
GGAAGAACATATGTTGTTCATCGCTCCGCTCCCGCGGTGCACGGGAAAGT
AGCATCGTACATTTGTTAACCCCATACTGGGCAACTTCCGCCATTTTCGT
TCTTGTTGACCCTGTGCGCTTCGAGTAAGTAGCCCCGGCGTTCTTTTACA
AAAGTAGGTAGCCCCTTGGGGTTAGGGTTGCGCTTAGCCCATTTGTGTGA
CTCATTTGACTCGCTTTCACTCATTTGCGTTGATGTACTTCGTTTTCCCA
AGTCAGTGAAGTGATATAGTTTCGTTTCGTGTTGGTATCCCGTTAGCCGT
TATCACCTTCTGAGCATCAAACTAGCCGAAGTATCAGTACCGCCCTCTCC
CTTCTCGGTAAGATTATTCAGTTTGTGGATAATAACATAATAACTGAGCA
TACCTTCTTTGTGTGGAACCCTTCCCCTTCTCCCCGCCGCCTCTCGGGAT
TCCCTTACGATGACATAATCCCTTGAACCCCGCGCCGTCAATTAATGTGT
TCACGCGCGATTGCTGGCGATTCTGCTCTAGGCGTCGAACATGCCACCGA
CACGATGGCGCGCAACGAGCAGCGCGGGGGCAGCCTTTCGCGCGTACTCG
CATTTGCCGGGCGTCGCGGTGGTGCACGAGGCGGGACGTTAGACAACATG
TCCATAAGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig4965:4070..10728- >mRNA_H-paniculata_contig4965.12158.1 ID=mRNA_H-paniculata_contig4965.12158.1|Name=mRNA_H-paniculata_contig4965.12158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig4965:4070..10728- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAGTGGGTGGAGCCGTCAATATGAGTGGGTGGAGCCGTCAATGCTGCG TTGGAAACATGGTGCGTGGAATTCGTCCGCGAGGACAGTCGTGTCGCCGC GATTTTCGCGCGTTGGTACCGGGACTGGTCGTGCTCCCGCGATGGCAGCC AGGGAGAAAGAGAAATTCAGCGTCAACCAACCGTAAGCGACACCTTTCGC TGCGTTGGAAACATGGTGCGTGGAATTCGTCCGCGAGGACAGTCGTGTCG CCGCGATTTTCGCGCGTTGGTACCGGGACTGGTCGTGCTCCCGCGATGGC AGCCAGGGAGAAAGAGAAATTCAGCGTCAACCAACCGTAAGCGACACCTT TCTGGTGCTTGGTTGGATGCTAGAGTGCGGAAGTGGTGCTTGGTTGGATG CTAGAGTGCGGAAGGTAGCGCACAACTCGGTGTGCCTTTCGGACATGTCC AAGTCGTCGCAATTAATGTGGGTATGTCCGGATCGGATTCGTGCCAAACC TGCGGCGCCACCCACCATCGCTGCCATCGCCCGAAAGGCTTATGGTGGCG CTATTCCTGCAGGTAGCGCACAACTCGGTGTGCCTTTCGGACATGTCCAA GTCGTCGCAATTAATGTGGGTATGTCCGGATCGGATTCGTGCCAAACCTG CGGCGCCACCCACCATCGCTGCCATCGCCCGAAAGGCTTATGGTGGCGCT ATTCCTGCAGGCGTCGAACATGCCACCGACACGATGGCGCGCAACGAGCA GCGCGGGGGCAGCCTTTCGCGCGTACTCGCATTTGCCGGGCGTCGCGGTG GTGCACGAGGCGGGACGTTAGACAACATGTCCATAAGAGCGTCGAACATG CCACCGACACGATGGCGCGCAACGAGCAGCGCGGGGGCAGCCTTTCGCGC GTACTCGCATTTGCCGGGCGTCGCGGTGGTGCACGAGGCGGGACGTTAGA CAACATGTCCATAAGA back to top
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