mRNA_H-paniculata_contig4963.12157.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4963.12157.1
Unique NamemRNA_H-paniculata_contig4963.12157.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4963.12157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4963contigH-paniculata_contig4963:7889..11814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCysteine alpha-hairpin motif superfamily
Ec32 orthologEc-26_005030.1
Exons3
Model size346
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4963.12157.1prot_H-paniculata_contig4963.12157.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4963 7938..11796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930462.2867472-UTR-H-paniculata_contig4963:7888..79371622930462.2867472-UTR-H-paniculata_contig4963:7888..7937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4963 7889..7937 +
1691481302.5489285-UTR-H-paniculata_contig4963:7888..79371691481302.5489285-UTR-H-paniculata_contig4963:7888..7937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4963 7889..7937 +
1622930462.3815072-UTR-H-paniculata_contig4963:11796..118141622930462.3815072-UTR-H-paniculata_contig4963:11796..11814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4963 11797..11814 +
1691481302.5925968-UTR-H-paniculata_contig4963:11796..118141691481302.5925968-UTR-H-paniculata_contig4963:11796..11814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4963 11797..11814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930462.302183-CDS-H-paniculata_contig4963:7937..81081622930462.302183-CDS-H-paniculata_contig4963:7937..8108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 7938..8108 +
1691481302.5594645-CDS-H-paniculata_contig4963:7937..81081691481302.5594645-CDS-H-paniculata_contig4963:7937..8108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 7938..8108 +
1622930462.3211365-CDS-H-paniculata_contig4963:11094..111631622930462.3211365-CDS-H-paniculata_contig4963:11094..11163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 11095..11163 +
1691481302.5706935-CDS-H-paniculata_contig4963:11094..111631691481302.5706935-CDS-H-paniculata_contig4963:11094..11163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 11095..11163 +
1622930462.3491964-CDS-H-paniculata_contig4963:11757..117961622930462.3491964-CDS-H-paniculata_contig4963:11757..11796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 11758..11796 +
1691481302.5832682-CDS-H-paniculata_contig4963:11757..117961691481302.5832682-CDS-H-paniculata_contig4963:11757..11796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4963 11758..11796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4963.12157.1

>prot_H-paniculata_contig4963.12157.1 ID=prot_H-paniculata_contig4963.12157.1|Name=mRNA_H-paniculata_contig4963.12157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MIHPNVRITSPVLVCPFHRWSTMSKVESKCRVLAADSYRCLDDLHMKNLE
ASKRDQQAACQTFFDKYKVCMKEEQAERKKARQEGPPRSLFD*
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mRNA from alignment at H-paniculata_contig4963:7889..11814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4963.12157.1 ID=mRNA_H-paniculata_contig4963.12157.1|Name=mRNA_H-paniculata_contig4963.12157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3926bp|location=Sequence derived from alignment at H-paniculata_contig4963:7889..11814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGCGAGCCACTGCGGTTAGAAGCCATTTTCCAAAATATTGATTATCA
TGATCCACCCCAACGTTCGAATAACCTCGCCTGTCTTGGTGTGTCCCTTC
CATCGTTGGTCAACCATGAGCAAGGTGGAGTCGAAGTGCAGGGTTCTAGC
GGCGGACAGCTACAGATGTCTAGATGATCTTCACATGAAGAACCTAGAAG
CTTCAAAACGCGATCAGCAGGTACGCGCTATACGGTATACTGTGTTGTAT
ACTGACTGTCATGTAAATCGATTGATATCATACAATCATCACAGAAGCAA
CACGACACCAACGAAACCTGTTAATTCTATTAGCAGCAGCATTGAACAAT
GGTTGCAACCAAGTGCTACTCGCTGGCACGGAGATGATCAGGCCGTTGGA
AGCAACAAGCTCGTGGCGTCAAGCTCCACTTGCATTCACTGCTTTTGGTT
TGTTTTGTGTTACCAAACCAAATCACGTCGCACCCCACAGATGATGGTCG
ATAAACACCCTTGTCGTAAATGGATTTACCCACATTTGCTCTGTCAAATT
TTCAGTTCTCCTCGGCACGTTTCCAACGATACAAGTCGTGCCTCGGTGCA
TCGTTTTTGCAGCAAAAACGACAAAAGGATACCAACGCTGACCGTTGATC
TTAGAAAGCTGGTGGTGTGGAGAGTACCGTATAGAAGGGAATAATTCCCA
CTTGAGTCTGTAGAGGACAGAACATCTTTTTCACAATGGCGTCGCCGGTA
GGACCCCTTATCACGGGATCTGAAGGTCGATGTGGAGAATAACCTATAGA
TGAGAATAATTCCCACTCAAGTCTGTAGAGGGTAGAGTACCCTTTTAACA
GAAACGATATTGCTAAAGCGGCTGAGCTCATTTCTGCCATTGCCTATTTC
TTGTGAACAGTCCTAGTGACAGACCCGCGTGTTGTTTTGGGGGGTTCGGT
GCCTCACTCTGATTAGAAAACGGCATATAGCAAAATATTCGTGAAGTGAA
GAACGAACCCTTTTAGGGTTATGGTTACTAATAGTTAGGTTGCGCTGGAA
CGATCTTGTGGCGCCCTGGCGGTGTCGCTCACATTTCTTAATAGCAATCT
CAGCTAATACGACCAGAATAGCGGATGAGTCTCATACAGCAGTAAACATG
ATGAAGAACGAGTTGTCACGATCAGAACGGGATCTCCTGATATTGGTAAG
ATCCAGTACAACTAAAATTAGAACAAGGATCTCTGTCTGCAGAACAAGCT
TGCATAGAATTGGAACTGAACATCTTTTGGACAAATGCACAATCTGCACG
ATCTGCACGATCAGATGCGACGGAATCGTTTTCTTTTCGGATCTGTAGTA
GCTTTTTCAATTATTGCTGAAAGTGCTGACCGGCCGTTTATCGATGTCTA
ACCTTTTCGTCCCAGAGTGTTTTTTATTTTTTTTCTTGTATTACGAAGTT
ACCCCCAATTGTTCAGCCGTGAAACTAGTTGACACCCCATATACCACACT
TCGAATATAAAAAATCAAAATGGCATACTGGGCTGTTGCCTCGAATCTTG
CCAATAATGGTGACTACAGTGAATCAATACCGCTCCATTGGGGCTGCTGA
GCAAATTAGACCATATAGCTCTGCTGGCAACTCTCTGTCATGATTGAGTC
AGCCGCGTTTGCACGGAGAAATACGACATCAAGAACTGATTACACAGTGA
TATCTACTTTGCCTGTTATGTGTCATCTGCGATGTTTGTTCCATGTTGGA
CACCAAAACCCAGTACTACCACGATTCCCACGGATTTCTCTATTGACCAA
GCCTGGCTGAGCTCTTCCGTACTCGATCCATTCAACCTAAATTGTAGTAA
GTCTCGTTCTTCTATAAGGATTCGTTCTTCATCTCACGAATATGTTGTTA
TATGCACGTGGCGTACAGTAAAACTCCCACAAAATAATTGGCGGTGAATC
CTTCTCGTGAATCGCTTTGTCTTGCGAGGGGGGACAACGGTGATCAATAT
GGCTTATCAAAGCGCGTATTACCGCAGAGTCCAATTTTGGCACCGGGCTG
TTGTGCTGGACCAGGCATTGGGGCATCCGGGATCACGACGTTATGATGGG
TGTTTCAAGAAGAGGCCGTGTCTTCCTCTCTGGCAGTTAGCTCGTTGAGG
GTAGTGCACCTCTTTCTATATATATATACTCCCTCTGTCCGATAAGTCTG
TGGGATAGAGATTGTAACTTTTGTAGGAGACATACCAGCAAGAAATTGTT
GCTTGCGTTGGATTCCTTGGTCTTTTGGGGGTTCAGGACGACCGTGCGGA
GCATAGTTTTCAACAGCCATCACGTCCGCAGACAGCCTGGGATGGACCTA
TCTGTCGAGAAACGCATAAAATGCGGCGAGAATGCACAAAATGCACGCAA
CAAAGAAAATGCCAAAATAGCTGTACTTTGCGTTCGCATGCATAACTCTC
CGACCACACCTCCAAACATATATTGAGATAGTTCAAGTGAACGCACAAAA
TTTCAGCGTTCGACGAAGCCAATTCACACTCAGTGGGTGTTTGTAGATCC
TGAGCTGCAGTGCGTAGCTCAACCCGAAATTTGTGTCGGCTTCAAGAGGC
GAAATGTAGCAAATTGCCCCAGTTTTGATGCTGCTGTTTGAGCCGAATAC
ACGTCGGAGCGATCATTGCAATAGCTCGTATGAACGTGCAGGCTGCCAGG
TTTCGACCAACGCCACTCACAACTTGTGAACTGTGGGAGACCCCGAGAAG
CAGTACGCTGAAGCTGGACAAGTATGTTTTATGCGCACTCACATAGGATT
AAAGCTCCACTAGTATCGGGCTGGAAAATACAGAATCTCTATATATGTAC
TCCGGCACGATGTGCCGCTCTCTGTTGCAGATATTCTCTCCTCCTGTGAT
ACAGATTAACCTGATTGCCAGACACGACTACCAGCCCGATGCAACAGGCA
GTCGGTGTGTTGGAAGACATTACGAAATGTTTCACCCTGTTTTTTCAGAT
GGTAGTATGATGTTCATTTGTGGGTGGTAGCCCCTCAAGAGCCAAGGAAA
TGACAGTCTGTTTGCACCATTTAGTTCGAGTTTTCATTACGATATCAAAG
TCAATATTTCAATATTTGTAATTCCCTTTTGATCACCTTGCAACTCGATC
GTGTTCCTGAGACCTCTCTCTCTCTCTCTCTCTCTCCGTTTTTTTTTTTT
TGTCAGGCAGCATGCCAGACATTTTTTGACAAGTACAAGGTATGTATGAA
GGAAGAGCAAGCCGAGAGGAAAAAGGTGCGCCATGCTTAGGTCCATCATA
CACCCAGCGGTATATCATTATCATCCAGGATGAAGAAGATGACACGCACA
TAATATATGCTGAGATGATGCATGCCGCAACTCGAATTTGTTTTCGACAT
TCTGCCACACTCCAGTCTGTTAACGATATATTTGCGGTCTCCTTGTTTGG
CTAGAAGTTCCGCCCTGGCGATGTGCATCATTTTCGCCCCATCGTGCGCG
GTAGTCGCTTTTCTGCCCTGTTTTTTTTTTGTGGCAAATAATCTCAGTGT
CGAAAACCTTAACCCTTTACCAGGCACTAAGATATGGACACTTCACGAAT
TTCGATTTTTCCCTTGAAGGTAGCTTTCCTCAGGCTCCTTTTTCAACGAG
GTACTTATGTTTCTTGGGGGGGGGGGGGGGGGGTTGGAAAGTACAGACAT
TCTATTTCCTGCTTACAAATTGCTTACAGCACCTTGATATCCCCGCCTTG
CGCTGTTGTTTGTTACACACCCGAGTCCTCACCATCATGCTGCTTTCACC
TTTGCATACTGAGTGAACCCTCACGGCTCTTCCCCGTCCATTCATTCCCA
TCCCTCGCGTTAACACAAGGCACGACAGGAGGGGCCACCAAGAAGCTTGT
TTGATTGAGTCTCGGCTCGACGGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4963:7889..11814+

>mRNA_H-paniculata_contig4963.12157.1 ID=mRNA_H-paniculata_contig4963.12157.1|Name=mRNA_H-paniculata_contig4963.12157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig4963:7889..11814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCACCCCAACGTTCGAATAACCTCGCCTGTCTTGGTGTGTCCCTT
CCATCGTTGGTCAACCATGAGCAAGGTGGAGTCGAAGTGCAGGGTTCTAG
CGGCGGACAGCTACAGATGTCTAGATGATCTTCACATGAAGAACCTAGAA
GCTTCAAAACGCGATCAGCAGATGATCCACCCCAACGTTCGAATAACCTC
GCCTGTCTTGGTGTGTCCCTTCCATCGTTGGTCAACCATGAGCAAGGTGG
AGTCGAAGTGCAGGGTTCTAGCGGCGGACAGCTACAGATGTCTAGATGAT
CTTCACATGAAGAACCTAGAAGCTTCAAAACGCGATCAGCAGGCAGCATG
CCAGACATTTTTTGACAAGTACAAGGTATGTATGAAGGAAGAGCAAGCCG
AGAGGAAAAAGGCAGCATGCCAGACATTTTTTGACAAGTACAAGGTATGT
ATGAAGGAAGAGCAAGCCGAGAGGAAAAAGGCACGACAGGAGGGGCCACC
AAGAAGCTTGTTTGATTGAGCACGACAGGAGGGGCCACCAAGAAGCTTGT
TTGATTGA
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