mRNA_H-paniculata_contig4960.12153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4960.12153.1
Unique NamemRNA_H-paniculata_contig4960.12153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4960.12153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4960contigH-paniculata_contig4960:4026..10808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size545
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.9819171-CDS-H-paniculata_contig4960:4025..41081622930461.9819171-CDS-H-paniculata_contig4960:4025..4108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4960 4026..4108 +
1691481302.4352374-CDS-H-paniculata_contig4960:4025..41081691481302.4352374-CDS-H-paniculata_contig4960:4025..4108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4960 4026..4108 +
1622930462.0032194-CDS-H-paniculata_contig4960:10347..108071622930462.0032194-CDS-H-paniculata_contig4960:10347..10807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4960 10348..10807 +
1691481302.4499874-CDS-H-paniculata_contig4960:10347..108071691481302.4499874-CDS-H-paniculata_contig4960:10347..10807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4960 10348..10807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4960.12153.1prot_H-paniculata_contig4960.12153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4960 4026..10807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4960.12153.1

>prot_H-paniculata_contig4960.12153.1 ID=prot_H-paniculata_contig4960.12153.1|Name=mRNA_H-paniculata_contig4960.12153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
GWGCLERSRRSRLSWQVFGNTKRAMKKIDSKSCSGHNGECTKDAFPRSSQ
TRPLADAAGVTSFVVSAAHRSEGRRPSNNVGECAGQRVRENLFRYAGKCY
GTRATMVTTAPTGRRRPGSGASAAVLGKGAGLFRLLAGAFFFAAAVALTD
GGDALNGGFGNDGYRNGVCINGSGGYEKERR
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mRNA from alignment at H-paniculata_contig4960:4026..10808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4960.12153.1 ID=mRNA_H-paniculata_contig4960.12153.1|Name=mRNA_H-paniculata_contig4960.12153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6783bp|location=Sequence derived from alignment at H-paniculata_contig4960:4026..10808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGGGTTGTTTGGAAAGATCAAGGAGATCTCGACTCAGCTGGCAGGT
GTTTGGTAATACGAAACGTGCTATGAAAAAGATGTGAGTTCAGAGAAATA
GCATGAGTTATCTACATCGAATAATCCTATCTACCTGGCAGCGGCAACCT
CCCGGAAACCCAAAACCAGATGATAAGCATTGTTGCGTTCAGTGGTGAAA
TTCCACAGATCTTCACTAGATTGCCCACACCGCTTGTGAGGGCCTAGACA
GCAAGGTAGGTGGGGAACAAGTTATCGGGGCGAATCAGCGGTATATTGAG
CCGAAAGGTTTCACGGGTTGGTCAGCGGGAGCGGACTGGGATTGGCAAGG
ATGGTGTAAGAAAAGTATGTGAGATGCGCTTCAGCCACACAGCGCATTTT
CAAATAGGCTTGCAGTTTTGGATTTTTTTTCGAAAAGTGTGTTTTCTTGA
ATTCTGCAGGGTACGAGTACTGTATACCATAATACGCGCCCCCCTATGGG
TATCGCACTGGAGTGCGATCGATACCGACGAGGGGTGCGACGATATTCGA
GATGGGGTCTGGTGGGCGGTGCGAGGAGAACGTCCTCATATATCTTGAAA
TACGTCTTTTTTGGAGCTTGAATACCTGGCAGTCATGTGCACCTCCTCCG
GAGTAACACGGTTCACCGGAAAGGACAAGCGACAATCAAATGGACAGCGA
TATCTCACTATCATAAAATGAGTGCAGTGCAATTTCATCCTTCACAAATC
GCGGTTGCCCGCAGGCAGCTGCAAATAAATGCTCTAGATATTCACAATGA
AACGATAAAGCGGAATTCTACGAGAATAATATTCAGACATGATCTCAGAA
CATAACGAACACCATTAGACCGAAACCGAGATCAAATCAATTCCAGACCA
AACCAAACAGGAACCAAATGGAACAATTTAAAACCAAATTGACTGCGCTC
CTTCATTGTATCGCGGTACTGTACCGCTATGCCGACGTTGCTATCGGGAC
AAACACAACGCCCTGCAAAGCTGGACTTCACACTCTATAACCGCCACCTA
CACCAGTTCAATGACATCCCCATCCTCCATGATATCTTCCTCCTCGCCGA
CTTCCCTGCAACGAACGTTTTTCCTTTTACCACCCACCCCCCCGTCGCTA
TCGCACTGTGCGATCTGTCACGGACGAATATATGTTGTCGATTCGCACCC
GGTAATAGTCTGAGAAGATAATCTCACAGATCTCCGTTTCTTCTGGCAGT
AGTTTTTTGTTTTTTTATGGCGTCCAAAACATGCCACAACACAGAATACC
ACAAGCTGGTTGTGGGGTGGTCAAGGCATTGAGAAAACGTCGCATGTTGC
CTTCGGAAGTAAGTACATCTTCAGGTCTAGTACTACTGGGAGTGCTTTGG
TGAAGTTGAGAGTGAATCGTGAGACTTACAGTTTTTTTCTATTTTTTTTT
TGTTGATTTTGAGAGCAAAGATCGACGATTCGACTTGCGCATCCTTGACA
AGAAAACGACGGCGCCGAGCTGACGGTCAATACGATGAATCCCATGTACG
TCCGAATCGAACACCTTGAAATTCAAGGCTTGATTAACGGACGAAAACCT
TTCAATCGATGCCAGTATGCGATGGATAGTGATTTTCGGCGATATCTCCG
AAATTGGTGGACTCACTTTTTTTTTTTTTGAGGGGGACTGAATATTCACA
AAAAATGCAAACCCCATCACTCTCAATTTCACCCTACTATGTTCACTGTG
ATTTGACTCTGAATGAAAATCCCAGTTCGGAACATGTTGTTCAGGTGTTG
ACTGTGAGGGAGAGCGATACGATCCCAACGGCCAAAATGAAAATCCCCTG
TTTGTTGTTTCTGCGTCATAGCCTACGAAATACGAATTACTGGATTCAAG
TATTAAAATTTATATCGAGTAAATCTTAGCTCTGAGATCAAACTGGCCAA
TGCCAATGTACTAAGTACATGCCGACACCTGTCATATAGTGCATGTCCAG
TGGCGATTTTGGATTCGCCTTGTATTGGTGACGCATGTCGCGAAAATAAT
GTATTTAAAAGATATTTCTGTCCGTATCTCGCTCATTTTCCGTTTAGCCA
AATTCGCCACTGCACATGCACTAGTATTGGTCACACAGCGAGCAGAGCAT
AGCAAACCGCGCACGATTCCTCGCAGTTATCGACGAGAATTGCCTCATCA
AAGATCGCATGGCTTGCCATGCAGCCAAGTTTTTCGTTACTAATTTCAAG
TATAAAACAATGTAGAACGTAACTCAGCATGACTTGGCGGCTACGCGTTT
CTGTACTAATTTCAAGTAAAAAGCCATATTCATAAATTGAGCAGCATCTC
AGCAAGATTAAAATACGTAACTGAGGTTGAAAAAACAAAGGGGGGTGTCA
CTGCCCAATTTTTTGAGGCGGGACATAGTCGCCAGCGGGATTGAAGCCAC
CTCGCGGCCGGTGTACAGCAGAACAAGAGTTAGTACAGGTAGTAGACCAG
ATCGCTCGACACGACCTGCCTTACCCCCTGCTATGCGTTTTAGTAGCTGT
AAGGGCTCAGCAATAAGTGAATATGTGGACCCGTCGAAACACTAGGGTAC
CTGGCCAAGTGGGAAAAAATAAACAGCTAGCGCGCAAGTTGGTCAAAACG
AGAACTGGTAGAAGCCCTTCGTAGTTTACAGCTCCATAGAAATTGAAACG
TGTCGTGAAGAGAGATGACTTATCGTTATCTGAGGCGCTGCGGGTGGTAT
TGCCCACAGGGCCCGGGGGGGGTGACCCAGACGGCATTAGGCGGCAGCTC
AGATAGTGCACGGCGCTATGCCATGCCTCGTGTCTGTTGTACGGACCAAC
TTGCCTCATTTCAGTTCGATGGGTTCTTGCGGGTTCTTGCGTATGCTTTT
CTGATTGGCTCAATAATCTCCGGGACAGGCTTTCAACCGCGAATCACCCC
AACCACTCCCCCTAATTGTACTGATGATCACACACAGCTGTTGCCGTACC
TTGCGCTACGACACGTGGACACCCCAAACTGAGAGCTTTACCGAGCACGA
TGCTCCTGAATCATGACTTACCATACACTGCACACGTATGATGTACATGT
CTTCATATGTGGCAGAAAATATACAATACTAGTGAATATCTGGTCGAATC
TCGGGGAAGCTTGCGGTGCAACACTTCATTGACGGTGGCTGATCATTGTT
TCACATTAATATTGCTGACCAGTACAACAGAAATCGAAGGGGACGGGTGA
GTGCCGCACGTTTTTTTGCTGGTAACCGTTATACTATTTTTTCATTCGTG
ATATTGGAATCAATGCTTAGGTGTCGGCCTAAACGAGCGAGCCTGATTTC
CCGACTTTCAATTCTTGTCTCAGGGTTTAGTTTGTGTACCGTAACCATTT
GACATTATTTAGTGTTTTTTCTTTCTTTTTTTCTTTTCTTTTCTTTTCAC
ATGAAATGGTTGAGATACAGAGCTTGAATTAACTCTCAGACGAAAACCGG
AAATCGGAAAAATCAGAATCACTTAGTTTTAAAATGGCTCTTAGGCCGTG
TCTTCTCGAGGCACGGAACAATTGGAATTTCGTTGTTAAGAAAACGAAAT
TACTCTGGGATTGGCCGAGCGAACGTTTGGCCGAGAGAGTTGTAGAGTTT
TTTGTTTCTTCTGTACATCGCTGTTCTACCGCGTTCACATGAGTGCTGGA
CTTGATGCTATCGTCCTTGACCATACTTGTGACTTTTTGGGGGGGGAGCG
TTTAATCTTTCTTTTTGGTGTGCCGATGCCAGGATTCGAACCGATGACCT
TCTAGACGAGAAGCAGACAAGTTATCGCACCCATGTCGTCATATGTGATA
TTGAGGGTAACCGTCTTCGATTGACGTTGGGGTGATTATTACACCTTTTA
AGGTGTTTTTCAGGTGGCCACCACACGAAGACTTGTTACAAGATGAAGTA
GTTCGTCGTAGGCACCATAATGATAGTGAATATGCCTTTGATTGGTGCAG
TTGAAAAAAACATAGCGACCAGACCAAGCACAACCAAGGCTCAGCGTGTA
GTCCCAAGGGCGTGAATTAAACGGGTGACAAATTAATGCAGCACTGCCCA
TGGTGACAGAGAGAGCTTCATTACCCCCGGAACGACAATACATATATATA
TATATATATATTGGGCCGTAGCATTTGATCAACTGAGCATGGTGCACTTG
GTTCAGGTAGAATCGTCCCGGATAGGAAAAACAGTTGTTTATCGTGCGCA
CGGGGGCAAGCCAGACACGGACAAACAGGCACATACCGCACTTTTTGTAA
TTAGAAACGGACGTGAAATGCTGTAGCTCTCCCAACACATGGCGGAATCG
CGCCAAGCAAAGGCTGGCGTGTCCAGTTGATCAAGGTCTATGGTCGGACC
TAGTGTGCGTGTACTCTTGTCTCCTTATGCGTTGTGGTTCTTGGACTATC
TGTGGTTGTGGTATTTCCCCAAGTCCGGTACAAGTTGCACCTGGTTACTG
AACCATTTGTAACTGTCATGCTCACAAAAAAATTGATATCTGCAGGCACA
GCTCGTCTGCTCGAGAAGACTCGAAGCAAGGCATTCCGACGAGAAAATTC
TCGTTCTGTTGGAAAACGAAAATTTCCTTTTTGCCTGCCTCGATACAGAC
ATGGCCTTAGCACGAGAGGACAAAATGTCACAAACGATGTGGTACAGACA
GTGAGACTATGCAGCGCAAATTATGACCTATTCTCGCCGGAGTGGCTTCC
CGCACAAAGCGTGGTGCATGAGCCGACCGCGTGGAGACTTGTGAATACCG
CTGATGAGCCCAGCCCTAGACCTTCCATTGTCCACGTCGGTTCGCCACGT
AACCTCGTATTCTGAAGTCACTCCACCCGACTACTCCATTTATAATAGAA
GTTTGTCGTATAGCCAACCAAGCACTACTTAGTAGTACAGTGACGGTCGC
AACCGCTGTGGTGCGTTCCTTGGTCATACGTTGTGACACACCCCCTTCGG
CTGCCTTCGGCCGCTTGGTCGATACGCAGGGAGGGGCTGGGTCATACGTT
GCTCGCCTTGTCTTCAGATCCGATCCAGTTGTTCCGTCAAAAATATCAAA
TTTCGTTTTTTTGCCACCGTTGGCTTTTAGCTTTTTTTGTTTGTTTGTTT
CTGCGTGTTTTCGTGCCGGGTAAGACTGCCACACCTTACCCAAACGCGTT
CCCTATCCCTACACCCACTCCTTACACCAGCCCTTGTCGTGCTAAATCTG
GCTCCCTGTAGCGTCCGAAATCGCCCAAACGCTTCGTCGCCCCGCGGCGA
CGCCGCTCCTCGGCGTGGCGATGGCTAACGCGGAACGTCCTGGAGGCAGG
TTGAGGCAGGTGTAGGCGGTATATATTGTGGTCAAATCAAGTGAAACACA
ATTAACCATTTTTGATGACCAACCGTGGGGTATCTACTAACTGTGGGTAG
GGGGGGGGGCGGAACAAGAGTCTGCGTATTTATTTGTTATCGTGCTAAAT
ATTGGAGTTAACTGATTCGTGAATAATCCCAAACTTTGAATTATTCAAGT
TTTGTCCGTGGGACAGAACGTAGTGACGTACACTGGAGGTGGCTAGGGTC
GCCATTTCGGATTCTTTCTGCCGGCCGCGGAGCTATACTTGTGCCTCGCT
TGTATGTATTCATCAGTACAGACCCAGGCACACGCAGCCCGCAAGTATGA
GACTTATTGTAAACGTAACTGTGGGCCAGTTTTGCTTTCTCTTGAAAGTA
TTTGGTACCAGGATGAATTATTACTAAGTAGGCTATAGGCTTGAGCTCAA
TTTCTTGACGCCGATTTTTTTTTAGTTTTGGAAAACGTAAGCCTGTATTT
CTCACTGCCCTATTTCTTATTGGTGGGTTGCATCTCTGTTGCTTATTTCA
CACGCCTTCTTCAACACCCCATCGCCTGTCTGTCTGCCTGCCTGCCTGCC
TGCCCAGTTGGCGTGCGTTTTGATTTCGTTCTTGCACTCGACCTTGGCTA
TGACGAGTGTGTCTAGCCGCGATTATGAGCAATGAAGAATTTACGCCAAA
AAATACATGTATATGTTGTACACGACCGTGTATGAAGTGTCGTAAGCTGA
TCACATGCATCAATATTATCGCTGGGGGTACGGGGTTATGTGACTTTGAT
TCCCCTTCTCTGCCCGCCCCGCCCTGCGGGAAAGTGCTTGCTTATTCACT
TGATTAAAGTATGTGACTTTTCTTAAATGGCGATTAGTTGTTCTCCACAT
ATTTTTTCTGCGTCGTCTGTCTTGCTCAAACAAGTCTACACGTGCCGTGA
AAAAACTGTCCTGCTCCCTCAGAGATAGTAAAAGCTGCTCGGGGCACAAC
GGCGAATGCACAAAGGATGCCTTTCCTCGCAGTAGTCAGACACGACCACT
AGCGGACGCCGCCGGCGTGACGTCGTTCGTTGTTTCGGCGGCACACCGTT
CGGAAGGACGACGACCAAGTAATAATGTCGGAGAATGCGCGGGACAAAGG
GTGCGGGAGAATTTGTTTCGATATGCTGGGAAATGCTATGGAACACGTGC
AACCATGGTGACGACGGCACCTACGGGGCGGCGACGGCCGGGGTCAGGAG
CAAGCGCAGCTGTTTTGGGAAAGGGAGCTGGGCTGTTTCGCCTTCTAGCT
GGCGCGTTTTTTTTTGCGGCGGCAGTAGCACTCACCGACGGCGGCGACGC
ATTGAACGGCGGTTTTGGAAATGACGGTTACAGAAATGGCGTGTGCATCA
ATGGAAGCGGAGGGTACGAAAAGGAAAGGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4960:4026..10808+

>mRNA_H-paniculata_contig4960.12153.1 ID=mRNA_H-paniculata_contig4960.12153.1|Name=mRNA_H-paniculata_contig4960.12153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig4960:4026..10808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGGGTTGTTTGGAAAGATCAAGGAGATCTCGACTCAGCTGGCAGGT
GTTTGGTAATACGAAACGTGCTATGAAAAAGATGGGTGGGGTTGTTTGGA
AAGATCAAGGAGATCTCGACTCAGCTGGCAGGTGTTTGGTAATACGAAAC
GTGCTATGAAAAAGATAGATAGTAAAAGCTGCTCGGGGCACAACGGCGAA
TGCACAAAGGATGCCTTTCCTCGCAGTAGTCAGACACGACCACTAGCGGA
CGCCGCCGGCGTGACGTCGTTCGTTGTTTCGGCGGCACACCGTTCGGAAG
GACGACGACCAAGTAATAATGTCGGAGAATGCGCGGGACAAAGGGTGCGG
GAGAATTTGTTTCGATATGCTGGGAAATGCTATGGAACACGTGCAACCAT
GGTGACGACGGCACCTACGGGGCGGCGACGGCCGGGGTCAGGAGCAAGCG
CAGCTGTTTTGGGAAAGGGAGCTGGGCTGTTTCGCCTTCTAGCTGGCGCG
TTTTTTTTTGCGGCGGCAGTAGCACTCACCGACGGCGGCGACGCATTGAA
CGGCGGTTTTGGAAATGACGGTTACAGAAATGGCGTGTGCATCAATGGAA
GCGGAGGGTACGAAAAGGAAAGGAGGAGATAGTAAAAGCTGCTCGGGGCA
CAACGGCGAATGCACAAAGGATGCCTTTCCTCGCAGTAGTCAGACACGAC
CACTAGCGGACGCCGCCGGCGTGACGTCGTTCGTTGTTTCGGCGGCACAC
CGTTCGGAAGGACGACGACCAAGTAATAATGTCGGAGAATGCGCGGGACA
AAGGGTGCGGGAGAATTTGTTTCGATATGCTGGGAAATGCTATGGAACAC
GTGCAACCATGGTGACGACGGCACCTACGGGGCGGCGACGGCCGGGGTCA
GGAGCAAGCGCAGCTGTTTTGGGAAAGGGAGCTGGGCTGTTTCGCCTTCT
AGCTGGCGCGTTTTTTTTTGCGGCGGCAGTAGCACTCACCGACGGCGGCG
ACGCATTGAACGGCGGTTTTGGAAATGACGGTTACAGAAATGGCGTGTGC
ATCAATGGAAGCGGAGGGTACGAAAAGGAAAGGAGG
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