mRNA_H-paniculata_contig496.12152.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig496.12152.1
Unique NamemRNA_H-paniculata_contig496.12152.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig496.12152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig496contigH-paniculata_contig496:32868..33642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size775
Cds size759
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.754892-UTR-H-paniculata_contig496:32867..328831622930461.754892-UTR-H-paniculata_contig496:32867..32883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig496 32868..32883 +
1691481302.368219-UTR-H-paniculata_contig496:32867..328831691481302.368219-UTR-H-paniculata_contig496:32867..32883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig496 32868..32883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.7720017-CDS-H-paniculata_contig496:32883..336421622930461.7720017-CDS-H-paniculata_contig496:32883..33642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig496 32884..33642 +
1691481302.376307-CDS-H-paniculata_contig496:32883..336421691481302.376307-CDS-H-paniculata_contig496:32883..33642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig496 32884..33642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig496.12152.1prot_H-paniculata_contig496.12152.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig496 32884..33642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig496.12152.1

>prot_H-paniculata_contig496.12152.1 ID=prot_H-paniculata_contig496.12152.1|Name=mRNA_H-paniculata_contig496.12152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
MSRESWSSAVQQQKEEQGEELDAAVRPSKEQQGRGSMGAFVELSNEECKF
SDVDEDTGVPANFSTSLTSEVLPCSPAADGTTKRNDSEDWQAAGMRDGDG
DEEEKEEGWDGQQLAEARGLTVLPEPIKSALFSEAQDGARSSNNGRLHSG
SDAESAPSSEAMAMITDDEQQEGQKQQGKRAEGRERAKRRADEVTGLSSP
RCSSTSAVSPTLSSCDGRDDPSDVDGDHDGHDDNRRRCSSSSSNSSRIVG
MSR
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mRNA from alignment at H-paniculata_contig496:32868..33642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig496.12152.1 ID=mRNA_H-paniculata_contig496.12152.1|Name=mRNA_H-paniculata_contig496.12152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=775bp|location=Sequence derived from alignment at H-paniculata_contig496:32868..33642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACCGTCGTCAAGGATGAGTCGAGAATCTTGGTCGTCGGCGGTTCAAC
AGCAGAAGGAGGAACAAGGGGAGGAGTTGGATGCCGCGGTGCGGCCTAGC
AAGGAGCAACAAGGCAGGGGGTCGATGGGTGCGTTTGTTGAGCTATCGAA
CGAAGAATGCAAATTTTCGGATGTCGATGAAGACACAGGTGTCCCTGCCA
ACTTTAGCACCTCACTGACGTCGGAGGTTTTACCTTGTTCGCCTGCTGCT
GACGGCACGACAAAAAGGAACGACAGTGAAGATTGGCAGGCAGCAGGAAT
GAGAGATGGCGATGGTGATGAGGAGGAGAAGGAGGAAGGATGGGATGGGC
AGCAGTTAGCAGAAGCACGGGGTCTAACCGTGCTGCCGGAGCCCATCAAG
TCCGCGCTCTTTTCTGAGGCACAGGATGGTGCCCGTAGTAGTAACAATGG
CAGACTTCACTCCGGCAGTGATGCCGAGTCGGCGCCCTCCTCGGAAGCGA
TGGCGATGATAACGGACGACGAGCAACAGGAGGGGCAAAAACAGCAGGGC
AAGCGGGCCGAGGGCCGGGAAAGGGCGAAACGTAGGGCGGATGAGGTGAC
GGGCCTATCGAGTCCTAGATGTTCGAGCACATCGGCAGTGTCGCCGACGC
TATCGTCGTGCGACGGTCGGGACGATCCGAGCGATGTTGATGGTGATCAT
GATGGTCATGACGATAACCGCCGCCGCTGCAGCAGCAGCAGCAGCAACAG
CAGCCGGATCGTTGGCATGTCCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig496:32868..33642+

>mRNA_H-paniculata_contig496.12152.1 ID=mRNA_H-paniculata_contig496.12152.1|Name=mRNA_H-paniculata_contig496.12152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig496:32868..33642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCGAGAATCTTGGTCGTCGGCGGTTCAACAGCAGAAGGAGGAACA
AGGGGAGGAGTTGGATGCCGCGGTGCGGCCTAGCAAGGAGCAACAAGGCA
GGGGGTCGATGGGTGCGTTTGTTGAGCTATCGAACGAAGAATGCAAATTT
TCGGATGTCGATGAAGACACAGGTGTCCCTGCCAACTTTAGCACCTCACT
GACGTCGGAGGTTTTACCTTGTTCGCCTGCTGCTGACGGCACGACAAAAA
GGAACGACAGTGAAGATTGGCAGGCAGCAGGAATGAGAGATGGCGATGGT
GATGAGGAGGAGAAGGAGGAAGGATGGGATGGGCAGCAGTTAGCAGAAGC
ACGGGGTCTAACCGTGCTGCCGGAGCCCATCAAGTCCGCGCTCTTTTCTG
AGGCACAGGATGGTGCCCGTAGTAGTAACAATGGCAGACTTCACTCCGGC
AGTGATGCCGAGTCGGCGCCCTCCTCGGAAGCGATGGCGATGATAACGGA
CGACGAGCAACAGGAGGGGCAAAAACAGCAGGGCAAGCGGGCCGAGGGCC
GGGAAAGGGCGAAACGTAGGGCGGATGAGGTGACGGGCCTATCGAGTCCT
AGATGTTCGAGCACATCGGCAGTGTCGCCGACGCTATCGTCGTGCGACGG
TCGGGACGATCCGAGCGATGTTGATGGTGATCATGATGGTCATGACGATA
ACCGCCGCCGCTGCAGCAGCAGCAGCAGCAACAGCAGCCGGATCGTTGGC
ATGTCCCGCATGAGTCGAGAATCTTGGTCGTCGGCGGTTCAACAGCAGAA
GGAGGAACAAGGGGAGGAGTTGGATGCCGCGGTGCGGCCTAGCAAGGAGC
AACAAGGCAGGGGGTCGATGGGTGCGTTTGTTGAGCTATCGAACGAAGAA
TGCAAATTTTCGGATGTCGATGAAGACACAGGTGTCCCTGCCAACTTTAG
CACCTCACTGACGTCGGAGGTTTTACCTTGTTCGCCTGCTGCTGACGGCA
CGACAAAAAGGAACGACAGTGAAGATTGGCAGGCAGCAGGAATGAGAGAT
GGCGATGGTGATGAGGAGGAGAAGGAGGAAGGATGGGATGGGCAGCAGTT
AGCAGAAGCACGGGGTCTAACCGTGCTGCCGGAGCCCATCAAGTCCGCGC
TCTTTTCTGAGGCACAGGATGGTGCCCGTAGTAGTAACAATGGCAGACTT
CACTCCGGCAGTGATGCCGAGTCGGCGCCCTCCTCGGAAGCGATGGCGAT
GATAACGGACGACGAGCAACAGGAGGGGCAAAAACAGCAGGGCAAGCGGG
CCGAGGGCCGGGAAAGGGCGAAACGTAGGGCGGATGAGGTGACGGGCCTA
TCGAGTCCTAGATGTTCGAGCACATCGGCAGTGTCGCCGACGCTATCGTC
GTGCGACGGTCGGGACGATCCGAGCGATGTTGATGGTGATCATGATGGTC
ATGACGATAACCGCCGCCGCTGCAGCAGCAGCAGCAGCAACAGCAGCCGG
ATCGTTGGCATGTCCCGC
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