mRNA_H-paniculata_contig49595.12150.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49595.12150.1
Unique NamemRNA_H-paniculata_contig49595.12150.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49595.12150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49595contigH-paniculata_contig49595:485..1235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size586
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49595.12150.1prot_H-paniculata_contig49595.12150.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49595 508..1235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.6583579-UTR-H-paniculata_contig49595:484..5071622930461.6583579-UTR-H-paniculata_contig49595:484..507Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49595 485..507 +
1691481302.3377507-UTR-H-paniculata_contig49595:484..5071691481302.3377507-UTR-H-paniculata_contig49595:484..507Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49595 485..507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.6819715-CDS-H-paniculata_contig49595:507..6781622930461.6819715-CDS-H-paniculata_contig49595:507..678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49595 508..678 +
1691481302.3504899-CDS-H-paniculata_contig49595:507..6781691481302.3504899-CDS-H-paniculata_contig49595:507..678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49595 508..678 +
1622930461.7028463-CDS-H-paniculata_contig49595:845..12351622930461.7028463-CDS-H-paniculata_contig49595:845..1235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49595 846..1235 +
1691481302.3580356-CDS-H-paniculata_contig49595:845..12351691481302.3580356-CDS-H-paniculata_contig49595:845..1235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49595 846..1235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49595.12150.1

>prot_H-paniculata_contig49595.12150.1 ID=prot_H-paniculata_contig49595.12150.1|Name=mRNA_H-paniculata_contig49595.12150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MADEAGSGGGPYRGGDTEPGADHLPTPSRADSVVDLTAPEGETEKSQRGE
VKARQPLPAVTETMRVCSSQGLQEVQATARCHLYHLGMGSEDAAREKPEE
CAARVSGNAACHDKSCSGKFIGISTTATSSVTKHIDSKHQSRMSGFALPN
PLFFFFLTPGRLRQKHLFDASIPKYVYIPFTEQSYLF
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mRNA from alignment at H-paniculata_contig49595:485..1235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49595.12150.1 ID=mRNA_H-paniculata_contig49595.12150.1|Name=mRNA_H-paniculata_contig49595.12150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=751bp|location=Sequence derived from alignment at H-paniculata_contig49595:485..1235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGGCGTCCGGCGCGAACGTAATGGCGGATGAAGCTGGCAGTGGCGGA
GGGCCATACCGTGGTGGGGATACCGAACCAGGTGCAGACCATCTTCCAAC
GCCCAGCCGAGCGGATAGTGTGGTGGACCTTACGGCACCAGAAGGAGAGA
CGGAGAAGAGCCAACGAGGAGAAGTCAAAGCCAGACAGCCGCTGGTAAGC
GAAGGAGATGGAACACAATAAACTGTAGCTCGCAACTGCAGGAGTAGCAG
ATGCACATTTTGTAGACCAGCCCCCCATCCATCATACGGCAGCAGACCGA
AATCAATAGACTGTGCCCCTGCCTTTGCTGGACATGTGGACTTGTTCTTC
ATTTCATGCAGCCTGCGGTGACAGAGACGATGCGAGTTTGTAGCTCCCAG
GGGCTTCAAGAAGTGCAAGCAACCGCGAGATGCCACCTCTATCATCTGGG
GATGGGGAGTGAAGATGCAGCACGAGAAAAACCCGAAGAATGTGCAGCTC
GCGTGTCAGGGAATGCTGCTTGCCATGACAAGTCATGCAGCGGCAAGTTC
ATTGGCATCAGCACTACGGCAACCTCCAGTGTAACCAAGCACATCGACTC
GAAGCACCAATCACGTATGAGTGGCTTTGCGCTTCCTAACCCTCTTTTTT
TCTTTTTCTTAACCCCTGGAAGGCTAAGGCAAAAACATCTATTCGATGCT
TCCATACCGAAGTACGTCTACATTCCTTTTACAGAACAGAGTTATTTGTT
C
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Coding sequence (CDS) from alignment at H-paniculata_contig49595:485..1235+

>mRNA_H-paniculata_contig49595.12150.1 ID=mRNA_H-paniculata_contig49595.12150.1|Name=mRNA_H-paniculata_contig49595.12150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig49595:485..1235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGATGAAGCTGGCAGTGGCGGAGGGCCATACCGTGGTGGGGATAC
CGAACCAGGTGCAGACCATCTTCCAACGCCCAGCCGAGCGGATAGTGTGG
TGGACCTTACGGCACCAGAAGGAGAGACGGAGAAGAGCCAACGAGGAGAA
GTCAAAGCCAGACAGCCGCTGATGGCGGATGAAGCTGGCAGTGGCGGAGG
GCCATACCGTGGTGGGGATACCGAACCAGGTGCAGACCATCTTCCAACGC
CCAGCCGAGCGGATAGTGTGGTGGACCTTACGGCACCAGAAGGAGAGACG
GAGAAGAGCCAACGAGGAGAAGTCAAAGCCAGACAGCCGCTGCCTGCGGT
GACAGAGACGATGCGAGTTTGTAGCTCCCAGGGGCTTCAAGAAGTGCAAG
CAACCGCGAGATGCCACCTCTATCATCTGGGGATGGGGAGTGAAGATGCA
GCACGAGAAAAACCCGAAGAATGTGCAGCTCGCGTGTCAGGGAATGCTGC
TTGCCATGACAAGTCATGCAGCGGCAAGTTCATTGGCATCAGCACTACGG
CAACCTCCAGTGTAACCAAGCACATCGACTCGAAGCACCAATCACGTATG
AGTGGCTTTGCGCTTCCTAACCCTCTTTTTTTCTTTTTCTTAACCCCTGG
AAGGCTAAGGCAAAAACATCTATTCGATGCTTCCATACCGAAGTACGTCT
ACATTCCTTTTACAGAACAGAGTTATTTGTTCCCTGCGGTGACAGAGACG
ATGCGAGTTTGTAGCTCCCAGGGGCTTCAAGAAGTGCAAGCAACCGCGAG
ATGCCACCTCTATCATCTGGGGATGGGGAGTGAAGATGCAGCACGAGAAA
AACCCGAAGAATGTGCAGCTCGCGTGTCAGGGAATGCTGCTTGCCATGAC
AAGTCATGCAGCGGCAAGTTCATTGGCATCAGCACTACGGCAACCTCCAG
TGTAACCAAGCACATCGACTCGAAGCACCAATCACGTATGAGTGGCTTTG
CGCTTCCTAACCCTCTTTTTTTCTTTTTCTTAACCCCTGGAAGGCTAAGG
CAAAAACATCTATTCGATGCTTCCATACCGAAGTACGTCTACATTCCTTT
TACAGAACAGAGTTATTTGTTC
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