mRNA_H-paniculata_contig4956.12146.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4956.12146.1
Unique NamemRNA_H-paniculata_contig4956.12146.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4956.12146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4956contigH-paniculata_contig4956:4428..5162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size736
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.359672-UTR-H-paniculata_contig4956:4427..47721622930461.359672-UTR-H-paniculata_contig4956:4427..4772Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4956 4428..4772 +
1691481302.2424169-UTR-H-paniculata_contig4956:4427..47721691481302.2424169-UTR-H-paniculata_contig4956:4427..4772Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4956 4428..4772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.3767705-CDS-H-paniculata_contig4956:4772..51621622930461.3767705-CDS-H-paniculata_contig4956:4772..5162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4956 4773..5162 +
1691481302.2542033-CDS-H-paniculata_contig4956:4772..51621691481302.2542033-CDS-H-paniculata_contig4956:4772..5162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4956 4773..5162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4956.12146.1prot_H-paniculata_contig4956.12146.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4956 4773..5162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4956.12146.1

>prot_H-paniculata_contig4956.12146.1 ID=prot_H-paniculata_contig4956.12146.1|Name=mRNA_H-paniculata_contig4956.12146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MRREKLQPVADPPSIRNLTCNSSVPQSDTIPQIFASLVEARLTPWKMCLH
EQQNPPKLRAPKVDDRMYCTALSPCSSQKKISTHNTTTASERESWSVDSP
FNTPHKNSINYLQLGVVVPAEVRLDAALLV
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mRNA from alignment at H-paniculata_contig4956:4428..5162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4956.12146.1 ID=mRNA_H-paniculata_contig4956.12146.1|Name=mRNA_H-paniculata_contig4956.12146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at H-paniculata_contig4956:4428..5162+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTCAACATCCATATCATCACGCAGATTTTGTAAATTTCATTTTATTG
AAAAATGTGTGTAATTAGAGCTCTACTCCTGCAATAATGAAAGACCAGAG
GCTGTCCGTGGATGGATACAGCGACAAGAAAAGGGACATATTTCCTGACC
CCAACCGGGTCACCAGTGAATGCCAATATGAATCCAACAAACGGGGTACA
TCCAACCCGTCTACACTCTAGGGAGCATGTTTTTGGGAATCACAAATCAG
TGCAACAGGAGGGCACTACGAAATCCTTAGGCGAAAATTATGCATAAATT
CGACTCGTTGCGATAGATGCTTTCAATTTACTGGTACCTCGTGGTATGCG
ACGGGAAAAATTGCAGCCTGTCGCCGACCCTCCCTCCATACGTAATCTGA
CCTGTAATAGTAGCGTACCCCAGTCAGACACGATACCTCAAATATTCGCC
TCGCTCGTTGAAGCGAGATTGACGCCTTGGAAGATGTGTCTGCACGAGCA
GCAAAATCCCCCCAAGTTGAGAGCACCAAAAGTCGACGATCGCATGTACT
GTACGGCTTTGTCACCATGCTCGTCCCAAAAAAAAATTTCAACACACAAC
ACCACGACGGCAAGCGAGCGGGAAAGCTGGAGTGTCGATTCCCCGTTCAA
CACTCCCCATAAAAACAGCATCAATTACCTGCAACTTGGAGTTGTAGTAC
CGGCAGAAGTCAGACTTGATGCGGCCCTTCTCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig4956:4428..5162+

>mRNA_H-paniculata_contig4956.12146.1 ID=mRNA_H-paniculata_contig4956.12146.1|Name=mRNA_H-paniculata_contig4956.12146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig4956:4428..5162+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACGGGAAAAATTGCAGCCTGTCGCCGACCCTCCCTCCATACGTAA
TCTGACCTGTAATAGTAGCGTACCCCAGTCAGACACGATACCTCAAATAT
TCGCCTCGCTCGTTGAAGCGAGATTGACGCCTTGGAAGATGTGTCTGCAC
GAGCAGCAAAATCCCCCCAAGTTGAGAGCACCAAAAGTCGACGATCGCAT
GTACTGTACGGCTTTGTCACCATGCTCGTCCCAAAAAAAAATTTCAACAC
ACAACACCACGACGGCAAGCGAGCGGGAAAGCTGGAGTGTCGATTCCCCG
TTCAACACTCCCCATAAAAACAGCATCAATTACCTGCAACTTGGAGTTGT
AGTACCGGCAGAAGTCAGACTTGATGCGGCCCTTCTCGTCATGCGACGGG
AAAAATTGCAGCCTGTCGCCGACCCTCCCTCCATACGTAATCTGACCTGT
AATAGTAGCGTACCCCAGTCAGACACGATACCTCAAATATTCGCCTCGCT
CGTTGAAGCGAGATTGACGCCTTGGAAGATGTGTCTGCACGAGCAGCAAA
ATCCCCCCAAGTTGAGAGCACCAAAAGTCGACGATCGCATGTACTGTACG
GCTTTGTCACCATGCTCGTCCCAAAAAAAAATTTCAACACACAACACCAC
GACGGCAAGCGAGCGGGAAAGCTGGAGTGTCGATTCCCCGTTCAACACTC
CCCATAAAAACAGCATCAATTACCTGCAACTTGGAGTTGTAGTACCGGCA
GAAGTCAGACTTGATGCGGCCCTTCTCGTC
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