mRNA_H-paniculata_contig49552.12144.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49552.12144.1
Unique NamemRNA_H-paniculata_contig49552.12144.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV)

HSP 1 Score: 84.7 bits (208), Expect = 7.570e-17
Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
            EM+ +  +G WT V RP N+  V    +YK K    G + K K RLVA G  Q +G+ + E  +P   + + +++L+LAA +DWK+ H D + A+L   + +E++VE P
Sbjct:  689 EMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSAFLNGDLTEEVYVEQP 797          
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A5A7TC06_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TC06_CUCME)

HSP 1 Score: 84.0 bits (206), Expect = 1.370e-16
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    1 KVEMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
            K EM  +  +G W  V+ PK K  +    +YK K   DG +EK K RLVA G+ Q  GI F+E  SP     + ++VL+LAA Q W +   D +  +L   +++E++VE P
Sbjct:  457 KEEMTTIEKNGTWKMVDLPKGKNAIDLKWVYKTKFAADGSLEKHKARLVAKGHAQQHGINFEETFSPVARFETVRVVLALAAQQQWSVYQFDVKSDFLNEELEEEVYVEQP 567          
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 83.2 bits (204), Expect = 2.690e-16
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
            EM+ L D   +  VE P+N  +V +  +++ K   +GK+E  K RLVA G  QI GI F +  +P   +AS +++L+LAA  DW +   D + AYL A +++EIF++ P
Sbjct:  982 EMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQP 1090          
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 83.2 bits (204), Expect = 2.700e-16
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPID--QEIFVEIP 333
            E+  L  +G WT V RP  + +V    + + K    G++EK K RLVA G  Q++G+ + E  +P   +AS ++VL++AA  DW +   DF  AYL   +D  +EIF+E P
Sbjct: 1084 ELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGELDTDEEIFMEQP 1194          
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: UPI0008FD5801 (uncharacterized protein LOC109116481 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD5801)

HSP 1 Score: 82.0 bits (201), Expect = 4.740e-16
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    4 VEMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
            VE+  L+ +G W+ V  P  K  V    +YK K   DG VE+ K RLVA G  Q +G+ F +  SP   + + K++L+LAA Q+W L   D   A+L   +++EI++ +P
Sbjct:    3 VELDALVGNGTWSVVSLPPGKRAVGCKWVYKIKRKADGSVERYKARLVAKGFTQQEGVDFIDTFSPVAKLVTVKLLLALAAKQNWILTQMDVTNAFLHGDLEEEIYMSLP 112          
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A401GTF6_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GTF6_9APHY)

HSP 1 Score: 82.0 bits (201), Expect = 6.830e-16
Identity = 41/109 (37.61%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
            EMQ L D   +  VE P+N  IV +  I++ K   +G++E  K RLVA G  Q+ G+ F +  +P   +AS +++L+LAA  DW +   D + AYL A ++++IF++ P
Sbjct:  951 EMQNLRDHHTYDLVEPPENTNIVGSKFIFRIKHNANGEIESYKARLVAQGFTQVPGVDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNAELEEDIFMKQP 1059          
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY)

HSP 1 Score: 82.0 bits (201), Expect = 6.850e-16
Identity = 36/110 (32.73%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    7 EMQGLIDSGVWTQVERPKNKL-IVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
            E++ L+ +  WT VERP + + +V + ++ + K    G+++K K RLVA G  Q+ G+ + E  +P   ++S +++L++AA  +W ++  DF  AYL +P+D+++++E P
Sbjct: 1176 EIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYLNSPLDEDVYMEQP 1285          
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: UPI000B788C25 (uncharacterized protein LOC110730797 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B788C25)

HSP 1 Score: 79.7 bits (195), Expect = 8.150e-16
Identity = 38/109 (34.86%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
            E+  L  +  W  V  PK K ++    ++K K+  DG VE+ K RLVA G  Q  GI + E  SP   + + + +LSLAA+Q WK+   D   A+L   + +E+++++P
Sbjct:    4 EIDALTANNTWVLVPLPKEKKLIGCKWVFKVKLKADGTVERLKARLVAKGFTQKYGIDYLETFSPVVKMTTKRCILSLAASQSWKIHQLDLNNAFLHGELHEEVYMKVP 112          
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A6D2HEE2_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HEE2_9BRAS)

HSP 1 Score: 81.6 bits (200), Expect = 8.600e-16
Identity = 38/109 (34.86%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 EMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
            E+  L DSG W  V+ P  K  +    ++K K   DG VE+ K RLVA GNRQ +G+ + E  +P   + + +  L++AA+++W L   D   A+L   +D+E++++ P
Sbjct:   42 EITALEDSGTWDLVDLPPGKRAIGCKWVFKLKFNSDGTVERHKARLVALGNRQEEGVDYDETFAPVIKMTTVRTFLNVAASRNWALHQMDVHNAFLHGTLDEEVYMKPP 150          
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Match: A0A2P6S8W7_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S8W7_ROSCH)

HSP 1 Score: 80.9 bits (198), Expect = 1.730e-15
Identity = 36/111 (32.43%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 KVEMQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGNRQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPIDQEIFVEIP 333
            ++E+Q L D+  W+ V  P +K  +    +YK K   DG +E+ K RLVA G  Q++G+ ++E  +P   + + +++LSLAA Q+W L   D   A+L   + +++++ +P
Sbjct:  783 RLEVQALQDNKTWSLVPPPAHKRPIGCKWVYKIKYNPDGTIERYKARLVAKGYSQVEGLDYRETFAPVAKLTTVRVLLSLAAQQNWHLHQLDVNNAFLNGDLHEDVYMHLP 893          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49552.12144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8I6XHP4_HORVV7.570e-1736.70Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A5A7TC06_CUCME1.370e-1637.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GQU1_9APHY2.690e-1638.53Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A146H565_MYCCL2.700e-1637.84Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
UPI0008FD58014.740e-1637.27uncharacterized protein LOC109116481 n=1 Tax=Taren... [more]
A0A401GTF6_9APHY6.830e-1637.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4M1W0_9APHY6.850e-1632.73Uncharacterized protein (Fragment) n=1 Tax=Antrodi... [more]
UPI000B788C258.150e-1634.86uncharacterized protein LOC110730797 n=1 Tax=Cheno... [more]
A0A6D2HEE2_9BRAS8.600e-1634.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6S8W7_ROSCH1.730e-1532.43Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49552contigH-paniculata_contig49552:912..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.5
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size333
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.0017798-UTR-H-paniculata_contig49552:911..9201622930461.0017798-UTR-H-paniculata_contig49552:911..920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49552 912..920 +
1691481302.1085594-UTR-H-paniculata_contig49552:911..9201691481302.1085594-UTR-H-paniculata_contig49552:911..920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49552 912..920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930461.018557-CDS-H-paniculata_contig49552:920..12441622930461.018557-CDS-H-paniculata_contig49552:920..1244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49552 921..1244 +
1691481302.1183577-CDS-H-paniculata_contig49552:920..12441691481302.1183577-CDS-H-paniculata_contig49552:920..1244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49552 921..1244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49552.12144.1prot_H-paniculata_contig49552.12144.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49552 921..1244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49552.12144.1

>prot_H-paniculata_contig49552.12144.1 ID=prot_H-paniculata_contig49552.12144.1|Name=mRNA_H-paniculata_contig49552.12144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MQGLIDSGVWTQVERPKNKLIVSTMMIYKRKIGEDGKVEKCKCRLVAHGN
RQIKGIQFQEASSPAPAVASTKMVLSLAATQDWKLRHGDFEQAYLQAPID
QEIFVEIP
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mRNA from alignment at H-paniculata_contig49552:912..1244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49552.12144.1 ID=mRNA_H-paniculata_contig49552.12144.1|Name=mRNA_H-paniculata_contig49552.12144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig49552:912..1244+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTCGAGATGCAAGGTCTGATCGACAGCGGGGTTTGGACGCAAGTGGA GCGCCCGAAGAACAAGCTGATCGTGAGCACAATGATGATCTACAAAAGAA AAATCGGCGAGGACGGAAAAGTGGAGAAATGTAAGTGCCGTCTGGTCGCC CACGGGAACCGTCAAATCAAGGGCATCCAGTTCCAGGAAGCTTCGTCCCC TGCACCCGCAGTGGCCAGCACAAAAATGGTGTTGTCGCTCGCGGCAACCC AGGACTGGAAGCTACGGCACGGCGACTTTGAACAAGCGTACCTACAGGCG CCCATCGACCAGGAGATTTTCGTCGAAATTCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig49552:912..1244+

>mRNA_H-paniculata_contig49552.12144.1 ID=mRNA_H-paniculata_contig49552.12144.1|Name=mRNA_H-paniculata_contig49552.12144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig49552:912..1244+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGTCTGATCGACAGCGGGGTTTGGACGCAAGTGGAGCGCCCGAA
GAACAAGCTGATCGTGAGCACAATGATGATCTACAAAAGAAAAATCGGCG
AGGACGGAAAAGTGGAGAAATGTAAGTGCCGTCTGGTCGCCCACGGGAAC
CGTCAAATCAAGGGCATCCAGTTCCAGGAAGCTTCGTCCCCTGCACCCGC
AGTGGCCAGCACAAAAATGGTGTTGTCGCTCGCGGCAACCCAGGACTGGA
AGCTACGGCACGGCGACTTTGAACAAGCGTACCTACAGGCGCCCATCGAC
CAGGAGATTTTCGTCGAAATTCCTATGCAAGGTCTGATCGACAGCGGGGT
TTGGACGCAAGTGGAGCGCCCGAAGAACAAGCTGATCGTGAGCACAATGA
TGATCTACAAAAGAAAAATCGGCGAGGACGGAAAAGTGGAGAAATGTAAG
TGCCGTCTGGTCGCCCACGGGAACCGTCAAATCAAGGGCATCCAGTTCCA
GGAAGCTTCGTCCCCTGCACCCGCAGTGGCCAGCACAAAAATGGTGTTGT
CGCTCGCGGCAACCCAGGACTGGAAGCTACGGCACGGCGACTTTGAACAA
GCGTACCTACAGGCGCCCATCGACCAGGAGATTTTCGTCGAAATTCCT
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