mRNA_H-paniculata_contig49540.12143.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49540.12143.1
Unique NamemRNA_H-paniculata_contig49540.12143.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: D7FHC8_ECTSI (Coatomer subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHC8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.650e-17
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLVS 135
            +VVRRWVNEV E VSSQHEMVQYHALSLLYQIKAHD+LAVSKLV+
Sbjct:   60 EVVRRWVNEVTEGVSSQHEMVQYHALSLLYQIKAHDKLAVSKLVT 104
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: A0A6U1MSQ3_9STRA (Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MSQ3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.050e-15
Identity = 36/44 (81.82%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    4 VVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLVS 135
            ++RRWVNEVQEA++SQ++MVQYHALSLLYQIKAHD+LAVSKLV+
Sbjct:  199 LIRRWVNEVQEALNSQNQMVQYHALSLLYQIKAHDKLAVSKLVN 242
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: A0A8K1CUF4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUF4_PYTOL)

HSP 1 Score: 76.3 bits (186), Expect = 5.240e-15
Identity = 35/45 (77.78%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLVS 135
            +VVRRWVNEVQEAV+S H+MVQYHA++LLYQI+ HDRLAVSKL++
Sbjct:  205 EVVRRWVNEVQEAVNSPHDMVQYHAVALLYQIRQHDRLAVSKLIA 249
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: A0A2D4BSX7_PYTIN (Coatomer subunit gamma n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSX7_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 9.770e-15
Identity = 34/44 (77.27%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLV 132
            +VVRRWVNEVQEA++S H+MVQYHA++LLYQI+ HDRLAVSKL+
Sbjct:  215 EVVRRWVNEVQEAINSPHDMVQYHAVALLYQIRQHDRLAVSKLI 258
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: K3WPR6_GLOUD (Coatomer subunit gamma n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WPR6_GLOUD)

HSP 1 Score: 75.5 bits (184), Expect = 9.770e-15
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLVS 135
            +VVRRWVNEVQEAV+SQH+MVQYHA+ LLYQI+ HD+LAVSK ++
Sbjct:  211 EVVRRWVNEVQEAVNSQHDMVQYHAVGLLYQIRQHDKLAVSKFIN 255
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: A0A7S3LLT2_9STRA (Coatomer subunit gamma n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLT2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.350e-14
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLVS 135
            ++VRRWVNEVQEAV+S+ EMVQYHALSLLY IK HDRLA+ +LV+
Sbjct:  209 EIVRRWVNEVQEAVNSRSEMVQYHALSLLYTIKCHDRLAIGRLVT 253
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: A0A7S1U574_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U574_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.360e-14
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLVS 135
            +VVRRWVNEVQEAV+S  EMVQ+HAL+LLYQ+K HD+LA+SKLV+
Sbjct:  258 EVVRRWVNEVQEAVNSSSEMVQFHALALLYQLKQHDKLAISKLVA 302
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: F0WG92_9STRA (Coatomer subunit gamma n=5 Tax=Albugo TaxID=65356 RepID=F0WG92_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.190e-13
Identity = 32/45 (71.11%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLVS 135
            +V+RRWVNEV+EAV+S H+MVQYH +SLLYQI+ HD+LAVSKL++
Sbjct:  209 EVIRRWVNEVKEAVNSPHKMVQYHGVSLLYQIRRHDKLAVSKLIA 253
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: A0A662XY71_9STRA (Coatomer subunit gamma n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XY71_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.620e-13
Identity = 32/45 (71.11%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLVS 135
            ++VRRWVNEVQEAV+S ++MVQYH +SLLYQI+ HD+LAVSKL++
Sbjct:  174 EIVRRWVNEVQEAVNSSNDMVQYHGVSLLYQIRQHDKLAVSKLIT 218
[Close]
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Match: COPG_CAEEL (Probable coatomer subunit gamma n=13 Tax=Caenorhabditis TaxID=6237 RepID=COPG_CAEEL)

HSP 1 Score: 72.0 bits (175), Expect = 1.620e-13
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLV 132
            +VVRRW NEVQEAVSS + MVQYHAL+LLYQI+A+DRLAV+KLV
Sbjct:  168 EVVRRWANEVQEAVSSDNHMVQYHALALLYQIRANDRLAVNKLV 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49540.12143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHC8_ECTSI6.650e-1788.89Coatomer subunit gamma n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6U1MSQ3_9STRA2.050e-1581.82Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica... [more]
A0A8K1CUF4_PYTOL5.240e-1577.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BSX7_PYTIN9.770e-1577.27Coatomer subunit gamma n=1 Tax=Pythium insidiosum ... [more]
K3WPR6_GLOUD9.770e-1575.56Coatomer subunit gamma n=2 Tax=Pythiaceae TaxID=47... [more]
A0A7S3LLT2_9STRA6.350e-1475.56Coatomer subunit gamma n=1 Tax=Aplanochytrium stoc... [more]
A0A7S1U574_9STRA6.360e-1475.56Hypothetical protein (Fragment) n=3 Tax=Pinguiochr... [more]
F0WG92_9STRA1.190e-1371.11Coatomer subunit gamma n=5 Tax=Albugo TaxID=65356 ... [more]
A0A662XY71_9STRA1.620e-1371.11Coatomer subunit gamma n=1 Tax=Nothophytophthora s... [more]
COPG_CAEEL1.620e-1379.55Probable coatomer subunit gamma n=13 Tax=Caenorhab... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49540contigH-paniculata_contig49540:773..913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6.1e-14
Seed eggNOG ortholog2880.D7FHC8
Preferred nameCOPG
KEGG koko:K17267
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0005911,GO:0009506,GO:0009507,GO:0009536,GO:0012505,GO:0012506,GO:0016020,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0055044,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5240@1,KOG1078@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930460.96289-CDS-H-paniculata_contig49540:772..9131622930460.96289-CDS-H-paniculata_contig49540:772..913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49540 773..913 +
1691481302.098094-CDS-H-paniculata_contig49540:772..9131691481302.098094-CDS-H-paniculata_contig49540:772..913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49540 773..913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49540.12143.1prot_H-paniculata_contig49540.12143.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49540 773..913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49540.12143.1

>prot_H-paniculata_contig49540.12143.1 ID=prot_H-paniculata_contig49540.12143.1|Name=mRNA_H-paniculata_contig49540.12143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
QVVRRWVNEVQEAVSSQHEMVQYHALSLLYQIKAHDRLAVSKLVSC*
back to top

mRNA from alignment at H-paniculata_contig49540:773..913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49540.12143.1 ID=mRNA_H-paniculata_contig49540.12143.1|Name=mRNA_H-paniculata_contig49540.12143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig49540:773..913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGTGCGACGGTGGGTGAATGAGGTTCAGGAGGCCGTATCTTCCCA
ACACGAGATGGTGCAGTACCACGCTCTCTCCCTTCTGTACCAGATCAAGG
CCCACGACCGTCTCGCAGTGTCCAAACTGGTGAGTTGCTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig49540:773..913+

>mRNA_H-paniculata_contig49540.12143.1 ID=mRNA_H-paniculata_contig49540.12143.1|Name=mRNA_H-paniculata_contig49540.12143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig49540:773..913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGTGCGACGGTGGGTGAATGAGGTTCAGGAGGCCGTATCTTCCCA
ACACGAGATGGTGCAGTACCACGCTCTCTCCCTTCTGTACCAGATCAAGG
CCCACGACCGTCTCGCAGTGTCCAAACTGGTGAGTTGCTAGCAGGTGGTG
CGACGGTGGGTGAATGAGGTTCAGGAGGCCGTATCTTCCCAACACGAGAT
GGTGCAGTACCACGCTCTCTCCCTTCTGTACCAGATCAAGGCCCACGACC
GTCTCGCAGTGTCCAAACTGGTGAGTTGCTAG
back to top