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Homology
BLAST of mRNA_H-paniculata_contig4954.12142.1 vs. uniprot
Match: D7G453_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G453_ECTSI) HSP 1 Score: 157 bits (396), Expect = 7.890e-44 Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 2
Query: 308 IDGVGGSGSNVLLAVAVALVMKGLLLPEEVRHLSFCPSEDPIRGRDTLPWRMMEESGRKCGSISEVSLQYLASPLAFPGTPEWGTMLNVKEDMMKEGW 601
+ GVG GSNVLL VA +V+KGLLLPE VRHL FCP+EDPIRGRDTLPWRMM ESGR+CG+I EV +Y+ +PLAFPGTPEWG MLN KED+ K+ W
Sbjct: 110 MSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAW 207
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-02_002210.1 |
| Exons | 4 |
| Model size | 824 |
| Cds size | 510 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4954.12142.1 >prot_H-paniculata_contig4954.12142.1 ID=prot_H-paniculata_contig4954.12142.1|Name=mRNA_H-paniculata_contig4954.12142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MTFPTAGAADAAAHAFDPWRTPGFSASGRRLSSPKASFTPRTTTLTTTTT TQLRASGGIGDSDSDAPTHKRIDGVGGSGSNVLLAVAVALVMKGLLLPEE VRHLSFCPSEDPIRGRDTLPWRMMEESGRKCGSISEVSLQYLASPLAFPG TPEWGTMLNVKEDMMKEGW* back to topmRNA from alignment at H-paniculata_contig4954:6013..13083+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4954.12142.1 ID=mRNA_H-paniculata_contig4954.12142.1|Name=mRNA_H-paniculata_contig4954.12142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7071bp|location=Sequence derived from alignment at H-paniculata_contig4954:6013..13083+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AGGCGTCGTGGAGGCGTTCGTACCGAGTTCTGTTCGACTGACATTTTCGG
TGACTGCCCGTCTTGACACCGCCTCTGGAAGGCGGGGTGGCGCCATGACC
TTTCCGACCGCCGGCGCCGCCGATGCCGCCGCACATGCCTTCGACCCCTG
GCGAACACCCGGATTCTCCGCCAGCGGACGCAGGTTGGTTTGTTTTATCC
TTCGCGTACGGATTCGGTCAAACCCTCTGTTTTATCGCTCTGGGGTAAGA
AGTTTCGTTTGAAGGACGACTGTCTCGAGAGCGGAGAGCTTACGCGGTCA
AAAGGGCCGGTCAGTCGACACGTCTCCGCAAGATCTTTCCAACGATACAC
ATTTCGTTGTTAGTAAAGCCTTATAGTAGGTAAAGAGAAAATATTGTTTA
TAATCACGGGTGAAAAACGGTCTCAACTTGATGCGATAACAAAGGGTTTT
GTGGTATGTATTATTGTGGAATGACGCACATGCTCGTGAGATCCGTGTGG
GACCGTCATGGTAAATGAGACCGAAAACAATTAGTAAAAATTCTTTTCAC
GTTTTCGCTCCTCAAATTTTCCGGTTTAATCTTGGCCAGCTTGAATCGAA
ATCACTGTGAACTAGGTGAAGATGAATGCCCACACGGGCAGGGAGGGAGA
CATGTGACATGTTTAGTTGCCGCATGGATATTAATATTGACCTCGTTGCA
GCACCCTCCCCACCCCAAACATTAAATCAGCTGATGAAAAGTTTAGCCTT
GTTTTTGTTTTTCAATGGACGAAATTTCCACCGTGGGAAAAATATCCTCG
AAGCTCCTGACCCCATACAAGAAATACCACATACTGAGTACTGCTAACGA
TAATCGTCACAAAAAGGCTTTGAGCCTCAGCGGCATTAAAGGGGTCTTGT
GGGGAAGTTGATAGTGTATCAGGTAACAAATCCGGTGATTCCGACTTTTC
TCGGAATCGTGTCGATAATAGAGGTCGTTTTTTTTTTTCGGTTTGCGCTT
GATTGCAAGAACCTCTGATCTTGTGTGAATCGAAAAATCCACAGTTCCAA
GTCGAGTACGAGAGGCACCCGCATTCATAGCGAGGGAACACTCAGCCACG
ACCTTGTTGAAAGAGCCAGGGTTCCTGGAATTAAAAGAGCTTTGAATGAA
ACAATCAAAACAGCGGGTCTAATTTCAAGTTTTTCGCGACCTTGGAAAAT
TTGTGCCTGTGAACACTGATAGCATCGAGCAGCAGCAACGGGATCCACTA
TTTGCGGCCCTCAGTAACGTATTACATATCCTCGCACAAAGTCCTACCAC
ACGAGTCGTCGTCCTGCGTTAAGGGGGACCTATTTTGGAGGATGATACTC
CCCTAAGAATGACTAACGAAACATGTTGACCGCATCAATTAACTCTGTTC
CCTTTTTTTTCGTTTCTCTTGGGTCCCGATACCTTACGTCACGTTGCGTT
ATGTGGAGCAACTGTTTTCGTGGCATTTCGTCATTCACCACATTACTTTC
ACCCCAAAGAGAGGACTGGCTCCTTTCGGCAAAAAGGGAGTGAATCTACC
CCCCCAATCGGAAAACGCGACGCCCGACGAAGCGACATGCTAATTTTCTG
TCTCGAGAGCCGCCGCCCCATTGAGCCTACTTTTTCGTGGTCTGCTTACT
CCTCGCAGTGGGCTATTGCCAAGTTTTTGTCTTTTTCCCTCATGTATTGC
GACCTGCCTTGCTGACCATGGTGACCTGCCTTGCTCTCGTATTTCTTTTT
CTGTTTCGTCACGTGCATCGTTGATAAGTCTCAGGTGAATGATGGTCATT
TCAGAAGCATATTTCAACTCTGTATTCATATAGCTTCTTGAAGTTCGAAT
CTTTGTGTACTTGCGCCTATGTGCGAGCGTAGTGAGCTACTGCAAGCACA
GCAAGCCGTTGTTTGTAGATTTTTACTGGATGGACTGGAGGACAAAGCAA
GGGTTGCACACGTCTAGCCGTGACTATATTTGATTGGCGGCACACGTAAA
TGCTGGATTATCACGTCTTGCTTTTTATCTAAAAAATCGCAGTCGGGTTC
CGTGGAAGGCTTTGCACAGTAGCTTTCCAATGGCGGTCCCTGCTTCTTCC
CAAACCAGTGGGAAGCTTCTCAAAAGATCCTTGGAAGCTGCGGCGAGACT
TCCAAAATCTCACTATTTCTTGATTTATGACGTCAAAAAATTGTTCGAAG
GGAAGTAAATACAGAATTATCTACGAAAATGGCGATGTCAGCTTCCTTAC
GACACCCCGCACACAACATATATCCCTGCGCTTCATGAGACAGCAAATGC
ATGTCTCCATACTGAGTTCCAAGTGAACAATTTGAGAAAATCGCTGTGCT
TTGATGATGGACTTCGGTGGCGAATTGACTGTTCGTATAATCATGTGTTT
TGTCCATGAAAATGGTCTATTGATTATGTGTAAGCTGTATGTGTGTGTCT
TGCGCGCGCCGGTACTTGTGATCATCCTGCGCGCATAGGCTATCGTCACC
AAAAGCATCATTTACTCCGAGAACGACCACCCTCACAACAACGACCACCA
CGCAGCTGCGCGCCAGCGGCGGAATCGGAGACTCGGATAGCGATGCACCA
ACACACAAGCGCATAGATGGCGTGGGCGGGTCCGGCAGCAACGTGCTGCT
CGCTGTCGCCGTAGCGTTGGTTATGAAGGGGTTGCTCCTGCCGGAAGAGG
TTCGGTGAGTGTCGTACACAATTAACACGTATGGTAGATACCGTTAAGCC
TATATTTTCTCTGTTTTTCTTCACTTTTTTCCCCCCAGGAGGCCAGGGCA
AAACCTTTCCTGACGCTTATACTGGATCAGCATTATCTAGATGCATTCAT
AATTATTTACGAACGATCTTCAGAGGAAATCTGACGCTCGGTCGTTGCGA
GATCCGGATCTTGAAGGGTGAAATGTTGAGATTTCAGGAGAAAACCCAAT
TTGCAACGAAATATTTTCGTTTTGTGTAGATTATTTGGCAAGAATTGATT
TTTGTGTCAATATCGAGAAATGGACTTGGGTTCCCGAGATTTCCAGGTTT
CTCCTGACTGTTGCCAAAAGGTGAGTGCTGGCAGAGTCCAGCATATTTTA
CATACAAAAGAAATGAGAAATACGACGCACGCCGAGTCTCATAGTAACAC
AAACGACACGTACAGAAAGACAGAGCTGAAGCGCACTCTAGTGCGCACAT
TAGCCCGTACTCAGTTGCACGCGCCTGGCTTGGTTTGACGGAAATCCACC
CTGTGTTGGTGAATTTGCAGTAGTTCTTGAGCAGTTCCGATTACTAAAAG
GTGCCGCTGTTAAACTTGTCTGTTTTGGCCGGTTGCCACGAAACACACCT
GTTCTTGTTCATTTCTGAACTGATTCTATCCAAACAAAAATATTCGAGGC
TCAGCAGATGAAGAGCTAGCGCCCGAACTACGTTTTATATATACCCGAAA
GTGACGATAATAATCACTGTGCTGCGTTCCTATATCATTTGTTGCAATTC
ACCACTTTTGTGGATGCTTTGGTCGCTTAGTCGACGCGAAGGGGCGTTGC
CGTGCCTTGATTGCCTTGTCTTCCAATCACGCGCATGATCGTTTTTATTT
TGTGCCCGCCAACGACCAAATTTGTTTTGAAACGTCTTCACATTCTCCGG
GGGGTTCCTGTAGAATCGATTTTTCGGCATTGTGAAAGCTTGATCAGCAG
CTTCCAGCGTTTCACCCCCCGGAAAAATACAAACACTTGGCGTATTCGCC
ATGAAATTAAAACGTTTCAGAAGGAGCGGACACATGAAAAAAGTACCCAC
CCATGCCCATTCGAGTTATGAGTATTATTAGCAGTCGCGGATGGTCCGGG
GCGCACAAAATACACGAGCTCATTGTGAATCTTAGGCGAATATTTTTTAA
TGTTGGTGGCGAATACGCGAAGTATGCAAGGTTGTCTGGGGGGTGTAGCG
TTTCGGACCCGTTTCTAAACCAATCACAGACCCTCCAGATTTTGAGCACA
ACTTCACTCTCCAGTCAGTTACTAGACGCTGCTGGTGCGGTATCTGTCTC
TATGTAGTACAAACACACACAGACACACACACATTTTCCCGGTCTGTCCC
AATAACTGCTGTTGGACGCCAACCCGACCACCCCCTCTGCCGTTGCCACA
GACACTTATCCTTCTGTCCAAGCGAGGATCCGATTAGAGGCAGAGATACC
CTTCCATGGCGCATGATGGAGGAGTCGGGGCGAAAATGTGGCAGCATATC
TGAGGTTAGAACTATGGATGCGGCCTATCGCCCACTTCAATTCTTCTCTT
GCTCATGTCCCTTATATCTCCAGGGTATTCAATACTTCTTAATGGACATA
AGGGTACATATTTCGGGTCGTCGCTGTTATGGAGGGAGTACTCGTTTTGG
CAGTATATTAATAGTGTATTAACGTAGTGACGAAGAGGAGTTTGAACCAT
GGACCAATCTTGACAGGTAATGATTGTGACCATTCGGATGTGTTCAAGGG
ATTTTGGAGTGTCTGGGCTATTGTGGTGTTTAACTGGCTTTTCGCGTCTC
AGAGCACCGGTTTGGTTGGTGTTGTGTTGTTCAGGGTGATGATGTCTTTC
TTGCAATTTTCCTTTTTGCTGGTTTTTGAGGTACAGAATTGTATTGTCCC
CCCGATGACACACTATTACTGCTTCATATTTTTTCAGCTCAGCACCGAAA
TAGCAGTGCTTGTCATAGATCACGTCGTCTGACCAGTGCCTCGCGTTAAT
TTTGTGCTACAGGACAATTTTATACCGTAAATCATGTTTTATTATGTAAG
CATGCGCTCTCTGTGCTGACTATGGTTTCAACACCAGGTACACCTTTAGT
CATTTCCTGGTGCCGATAGCACAGTCATCATCCATAGTTTTGAGACATAA
TCTGCACAACCTCTTCGTGATAGGTACATATTCGAGTATCGTGGGAAATT
GTACGGATTTACAAGATGAATCGTTTTTTTGTCGGGTTTTATGGTTTTCC
TGCTCTATTTCGTTCCTTGGGGAACAGGATCGATACCATATATCATGTAC
CATGTACCATGTACCATGCACCCCCCCCTCCCCCGCGGGGCTACTCGTTC
CCGTTCTACACGCCTGTGTCGTCGTAATCAGGATATTATACATAAACGAA
TCAATAATGCGGAGTTTCATCATGCAGCGACAAGCACATGACGCACCAAA
TCATCATTTTTGTGGCGTTCTGTTCGCTCCTATTTACATTGTGTCAATCT
GACGTCGGCAACCCTCTCCGCCTGTCGCTCGTATCACAAGAAGTATACTG
TTGAGAGACCCTTGAGGGGCTTCAAATGTCGCAATGTGGATGTCTTCGTC
GACGCATGCCGCGTGTATGTAGACCTCTATAACCCCATCAGGGCGCAAGT
TGAGCGCGAATCAACTGTTGTTGCTGTTTCTGTCGATGGGCAAAATGCCG
GCGAATCAATGAGTGCGCTTCTCAGATAAGACGAAAGATCACTCCGCCGC
CCCAACAATCGCGTTCATCGCTATTTTCCAGAATATAACACCTTGCTGCA
TGGAGAAAAATAGACAAACAGTATATCACAGAGAACAGATTTTAGATGTG
TGAGTCCGTTCAGAGTAAATTGGCGAGGTGTGTTACTGCAGAAGCGCGTT
TTTTTACCTTGTAAGCTAGTTGTACAGTGATGCCAACAGTTTACGGTATA
CTCCAGAATATTATTAGGAATAGTTTCAGATGTTTTCTGAATGGTCATGC
GTGAAATGAGTGTGATTTCTTTCACCAAAGGGTAGGTACTTTCACCACAA
AACACTTCAGCACTTGGTGTGGGTTATAGGTCTGATATCAAACACTCGGG
AGTACATCGGGGTTGTTCGCGGAGGTAAGTCGACGGGGGGGGGGGGGAGT
GATTCGAATGGGTTTCAGGGTAATCCTACAAAACAGCATGATAATTAACA
ATGCCCCAAGACTCGAGACTGCGAAACGTTTCTATCCTCTCGTTCGATTC
TTCCATCATTTGAGCCTATTGCAGGGACTTTATGTAAGCCTCTCGAACAT
GTGAAACGTACTGTAGACATGCTCTCACCCTAAAATATAGAGGGATTCAA
CCCCTAGGGGATTAAGTAGACGCGTTACTTTCCCAAAGCTGCTGACATCT
ATTCCGGGGGATGTTTTCCATCGTTCAAGTCTTTCGCTGGCAGGCGATGT
AACCCCCGAACATGTGAAAAAAACGATTTGGATGCCCTCAAACGAAGGTG
TAGGGAAGCCGAAAGTGCAGGGGCGTTCAACGCCACGGTAATGAAACAAA
CGATATTTCTTACCGAAGATGGTTATTGTCCACCATTGTAGTCTGTTGCG
ATCGAATTACGTTTCCTCCAGAGACGTGAGGGACGCTATTGTACCGTCCG
CAACTTGAAATATGCTCGTATTGCAGTGTAACCCCATCGGGATTGAGACA
GGCTCGCGCCCCTCCTATTATGCTGCAGCATATCGGGGGGGGGGGGGGTA
TCCACCGTCTAAGTCTATTGCTGGCGGAGGACCCTAAATGGGATTCAGTT
TCAATGTATGAATCCGTGAACAATTGTACGTGAATGACGTCGCCTGGATA
ATAATGAAACTTCCCAACACTTCTTTTTCGTCGCGTTGCGCTCAGTGCAG
CCTAGCTGACGTATGTACGTGATGCGTTGACTGAATGCAGTCATTAGTGA
TGACACACATGACCTTGGTTGTTCGTTTGTTATGCTCAATCAATCGCAGG
TATCGCTCCAGTACCTAGCCTCCCCGCTTGCCTTCCCGGGGACGCCGGAG
TGGGGCACGATGCTCAACGTAAAGGAGGATATGATGAAAGAGGGGTGGTG
AAACGGAAACGTCCAGGAACAACACTTCGTATGAAAACCATTGACAATTG
TGACAAACAGTTAAGGCAGACTCATGAGAGCTACGACCGCTGGATAATGT
GATACTTGAAAAAACAATTGATGATATCAGACAATCCTGGTGACTGTACA
ACAAGGCCGGGAGGAAGCCCGCCGCAAAATCTCCCTCAGCAAACATAACG
GCCATAGTCCTACTTCCGAAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig4954:6013..13083+ >mRNA_H-paniculata_contig4954.12142.1 ID=mRNA_H-paniculata_contig4954.12142.1|Name=mRNA_H-paniculata_contig4954.12142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig4954:6013..13083+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGACCTTTCCGACCGCCGGCGCCGCCGATGCCGCCGCACATGCCTTCGA CCCCTGGCGAACACCCGGATTCTCCGCCAGCGGACGCAGATGACCTTTCC GACCGCCGGCGCCGCCGATGCCGCCGCACATGCCTTCGACCCCTGGCGAA CACCCGGATTCTCCGCCAGCGGACGCAGGCTATCGTCACCAAAAGCATCA TTTACTCCGAGAACGACCACCCTCACAACAACGACCACCACGCAGCTGCG CGCCAGCGGCGGAATCGGAGACTCGGATAGCGATGCACCAACACACAAGC GCATAGATGGCGTGGGCGGGTCCGGCAGCAACGTGCTGCTCGCTGTCGCC GTAGCGTTGGTTATGAAGGGGTTGCTCCTGCCGGAAGAGGTTCGGCTATC GTCACCAAAAGCATCATTTACTCCGAGAACGACCACCCTCACAACAACGA CCACCACGCAGCTGCGCGCCAGCGGCGGAATCGGAGACTCGGATAGCGAT GCACCAACACACAAGCGCATAGATGGCGTGGGCGGGTCCGGCAGCAACGT GCTGCTCGCTGTCGCCGTAGCGTTGGTTATGAAGGGGTTGCTCCTGCCGG AAGAGGTTCGACACTTATCCTTCTGTCCAAGCGAGGATCCGATTAGAGGC AGAGATACCCTTCCATGGCGCATGATGGAGGAGTCGGGGCGAAAATGTGG CAGCATATCTGAGACACTTATCCTTCTGTCCAAGCGAGGATCCGATTAGA GGCAGAGATACCCTTCCATGGCGCATGATGGAGGAGTCGGGGCGAAAATG TGGCAGCATATCTGAGGTATCGCTCCAGTACCTAGCCTCCCCGCTTGCCT TCCCGGGGACGCCGGAGTGGGGCACGATGCTCAACGTAAAGGAGGATATG ATGAAAGAGGGGTGGTGAGTATCGCTCCAGTACCTAGCCTCCCCGCTTGC CTTCCCGGGGACGCCGGAGTGGGGCACGATGCTCAACGTAAAGGAGGATA TGATGAAAGAGGGGTGGTGA back to top
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