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Homology
BLAST of mRNA_H-paniculata_contig4952.12140.1 vs. uniprot
Match: D7FPM2_ECTSI (Myst-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM2_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.030e-33 Identity = 93/195 (47.69%), Postives = 129/195 (66.15%), Query Frame = 3
Query: 978 AYPKRARNAPDVFKAGPSMKPPS------TXXXXXXXXXXXXXAQVSASANGKKGSAKKHTPAKKKVELPXXXXXXXXXYHFKYSGWPVVGGRELISVGLFINAALPVLRLGRNYEVRMRELEQAVASPRPMENSLLGMIHARLLASRKELKAMRMGEDTFTYSFWTQRLKQRLTEWYLRRSILRELIEDAERAD 1544
+YPKR RNAPDVFKAGPS KP S T XXXXXXX XXXXXXXXXY F Y GWP +GGREL++ G+F+ + P+++ GR +EV+M+ LE+A++S +P EN LL ++H+RLL + +ELKA++ GE + YS+W +RL+++L++WY RR++LRELI +AER+D
Sbjct: 158 SYPKRIRNAPDVFKAGPSTKPMSPSKPTATTPAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRFDYKGWPAIGGRELLAAGMFLYVSAPMMKFGRGFEVKMQALEEALSSDKPEENELLSLVHSRLLCTGRELKALKPGELKYPYSWWAERLQKKLSDWYRRRAVLRELIFEAERSD 352
BLAST of mRNA_H-paniculata_contig4952.12140.1 vs. uniprot
Match: A0A6H5JCM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM5_9PHAE) HSP 1 Score: 144 bits (362), Expect = 4.550e-33 Identity = 94/200 (47.00%), Postives = 131/200 (65.50%), Query Frame = 3
Query: 978 AYPKRARNAPDVFKAGPSMKPPSTXXXXXXXXXXXXXAQVSASANGKKGSAKKHTPAKKKVELPXXXXXXXXX------YHFKYSGWPVVGGRELISVGLFINAALPVLRLGRNYEVRMRELEQAVASPRPMENSLLGMIHARLLASRKELKAMRMGEDTFTYSFWTQRLKQRLTEWYLRRSILRELIEDAERADSDHEL 1559
+YPKR RNAPDVFKAGPS KP S XXXXXXXXX XXXXXXXXX Y F Y GWP +GGREL++ G+F+ + P+++ GR +EV+M+ LE+A++S RP EN LL ++ +RLL + +ELKA++ GE + YS+W +RL+++L +WY RR++LRELI +AER+D + ++
Sbjct: 157 SYPKRIRNAPDVFKAGPSTKPMSPSKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRFDYKGWPAIGGRELLAAGMFLYVSAPMMKFGRGFEVKMQALEEALSSDRPEENELLSLVLSRLLCTGRELKALKPGELKYPYSWWAERLQKKLADWYRRRAVLRELIFEAERSDDEGDV 356
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 150.2 |
| Seed ortholog evalue | 2.8e-33 |
| Seed eggNOG ortholog | 2880.D7FPM2 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | peripheral T cell tolerance induction |
| EggNOG OGs | COG0553@1,KOG0383@2759 |
| COG Functional cat. | KL |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1845 |
| Cds size | 1656 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4952.12140.1 >prot_H-paniculata_contig4952.12140.1 ID=prot_H-paniculata_contig4952.12140.1|Name=mRNA_H-paniculata_contig4952.12140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=552bp
MANGDDAPKPRPRGRPKGSGKKKQTTPSGPPSSSSSSVVSTAGSTADSRG PGVSSGADSQVVDVAVAASTSVSVSASSNEVGKGRALANADTHLSAAASP PKKGRGRPPSKSRKTVVVTTSAESAAIVAGSDAQGRSSTPENAAGKNGNV SAKDEAESAKQTSSSSAGRNGSVEVSTLGPSSAGGGTGKRKDAAVVVKKS HKKIRPAGSERTAGSRLQPRRGVKVVDPSIPGGGLSVYTPSSPRGSIENS SSRKTQGKVCVASAYPKRARNAPDVFKAGPSMKPPSTPPSVPAKGSGKGT AQVSASANGKKGSAKKHTPAKKKVELPPPPPPPPPPYHFKYSGWPVVGGR ELISVGLFINAALPVLRLGRNYEVRMRELEQAVASPRPMENSLLGMIHAR LLASRKELKAMRMGEDTFTYSFWTQRLKQRLTEWYLRRSILRELIEDAER ADSDHELEVDLEQGSRKDSEEEEPRDDKKEQTTEGGGSEATTDVPRGGPN ENNDAAKAEHGTTAPETMVQAGGGIGSGSGGGGVEETKGNCGDAEDTKQQ AG back to topmRNA from alignment at H-paniculata_contig4952:2350..5689+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4952.12140.1 ID=mRNA_H-paniculata_contig4952.12140.1|Name=mRNA_H-paniculata_contig4952.12140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3340bp|location=Sequence derived from alignment at H-paniculata_contig4952:2350..5689+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AACTTTGAGCTGTGCTCTGCTAAAGCGGACATACAGCCCCCCATTACTGG
GTATAAGATCCATCTAAAGCGAGGATTAAAGAGAGATCAACTGAACTGTG
TGCTGTTGTCGTCAGGTGTGATAAAGGCTGGCCATACGTTTGTAGAATAC
GACAGTCGAAGTAGAAAAGACATTTCAAATCAGTCAACATGGCCAATGGA
GACGACGCGCCAAAACCAAGACCGCGAGGACGGCCGAAGGGCAGCGGAAA
GAAGAAGCAGACCACGCCGTCCGGCCCACCATCCTCTTCTTCGTCGTCGG
TAGTATCGACGGCGGGATCCACTGCGGACTCCCGTGGTCCAGGTGTGTCA
AGCGGTGCCGACAGCCAAGTCGTCGATGTTGCGGTGGCGGCGTCCACATC
CGTTTCTGTCAGCGCTAGCTCTAACGAAGTTGGCAAGGGTCGTGCGCTAG
CGAATGCCGACACCCACCTTTCAGCAGCCGCTTCTCCTCCGAAGAAAGGA
CGCGGGCGCCCGCCCTCGAAGTCTCGGAAGACGGTTGTAGTAACTACGTC
AGCAGAATCAGCAGCGATAGTAGCGGGGAGCGATGCGCAAGGTCGGTCTA
GCACACCCGAGAATGCGGCAGGGAAGAACGGAAACGTGAGTGCGAAAGAC
GAAGCGGAATCGGCGAAGCAGACGAGCAGTAGCAGCGCTGGAAGAAATGG
GAGTGTGGAGGTATCCACGTTAGGCCCCTCCTCCGCCGGTGGCGGAACTG
GCAAGAGGAAAGACGCGGCGGTTGTCGTCAAGAAGAGCCACAAGAAAATC
AGACCGGCGGGGTCGGAGCGGACTGCTGGATCACGTTTGCAGCCGCGACG
AGGAGTCAAGGTGGTGGACCCTTCTATACCAGGCGGGGGACTGTCGGTAT
ACACTCCATCATCCCCGAGAGGTAGCATCGAAAACAGCAGCAGCAGGAAA
ACGCAGGGAAAGGTGTGCGTTGCGTCTGCCTACCCGAAGAGGGCCAGGTA
AGAGGGGGGTTTATGCTCCAAGTGCTTGCTTCTACTGCAGACGGGTGCAG
TACAGTAGTATGCTGTGAACAATTCTCTCCTGATACGGCCTGTAGCCCTT
TTTGTTATCTGTTGTCTGTATCTTGGTTGCTATCCGTATTAATACTGCAT
ACAACGCGTGCGTCTGAATACTCACGGGCGACGTACAGTCAGCAGCTGGA
GACGACGTGTTGTCGCGTTCACGTCGTTTGCATTGGAAAGCTTTTGTGGT
GGCGTACATTATATGATGGTAGTGGTTATTTCTGGTCTTCCCACATTCCA
GGGTCCCCGCCGTCAAGGTTCGCGCAATTGTAAAAGAGATGAACCTGAGA
GTTACGGAATAGCTCCTTCGCATCAAGTATGGACACATACTATTTCAGTG
GTTTGGGGATCGAACGCTGGTTTGGAATGTCTCTCTCCAACACTCATCGC
TGTTGGTGTATAAGAGGGTTGGCGTTCGCCGACACGAAGCCTCGCGGTAG
TGTTTCCGACACAAATACTATACTTTCACACAAGCAAACGCCAACCCGTA
CGCCTTGTGACTCTCCACGCCTAGCTTGATTGCTGTGGGAGCACCACTTT
TTATCCTGATAGCTGTAAACAATAGTCACCACTGCTACAGGTATTTGTCT
CGTGCCTTTGTGTTTAGTCTCGCCCCTCTTGCTTTTCGTGCGTTGTTCGT
CTTGAATCTAGGAATGCGCCCGACGTTTTCAAAGCAGGACCCTCAATGAA
GCCGCCATCAACCCCTCCCTCGGTGCCGGCGAAAGGCAGCGGAAAGGGAA
CCGCACAGGTTTCTGCCAGTGCCAATGGGAAGAAGGGGTCGGCTAAGAAA
CACACCCCGGCTAAGAAGAAGGTGGAACTACCGCCTCCGCCTCCGCCCCC
GCCACCACCGTACCATTTCAAGTATTCCGGCTGGCCAGTGGTCGGAGGTC
GGGAGTTGATATCGGTAGGGCTGTTCATCAATGCAGCTCTCCCTGTCCTA
AGGTAAGTCCTGCGCGTTTTGGTGGCCTCACATTTACCCTAGCTTTAGTC
GTTGTTATTGCTGTTGTTGTTGCTATTTTGTCTCGCCGACCGTGCCGTTG
ATGGAATGGACGTGGACATATCGACATGATATGGCAATATCTCCACACAC
TGCTGACTTAGGTTGGTGATGATTGCGGTGGTATGTGGTGGCAGCGGTGG
TGGTGCTGGTCTTGGTGGCGAGCAGTAGAAAGGATGAGTGCAAGGGAGAG
GTTATACCTTCGTTTGTCTATTCACAGTGATTGTTGGAGATGCTTCACAC
CAAATGTTGTGCTGTCGCATATGACACACGTGACCCTATTTTCCACGCAA
CCTCCCCCTTCCTGCTCGCTCGTTCACCAACTTTCGCAACTGAACACCGA
ATTTTCCGCCAATCAGGTTAGGGCGCAACTACGAGGTGAGAATGCGAGAG
CTCGAGCAAGCGGTAGCTTCTCCTCGTCCGATGGAAAACTCGCTGCTAGG
AATGATCCATGCCCGTCTCCTGGCCTCGCGCAAGGAGCTGAAGGCCATGC
GAATGGGAGAGGATACGTTTACGTACAGGTGGGTTCATCGGAGTGGGGAT
GGAAGGTCGATGCCCACAGCACCATAAACGCGTCAGGAATGGCTGTGGTG
GGTATGTAAGTACAAGAGCGTGTACCGTAGGACTGAGCGTTGATTACGTT
GCACTGCTTCGTGTATGCGATCGCCTTGTTTTGTATGTTCCCGCCTGAAC
GTTCGAAGCTGTTCTGTAGACTGTGTACAGACATGTCAGATATGGATTAG
TTCGTGTTCAGTTTTTTTTTACATAGGTGCATGTCAAGTGGGGCTTGGCG
GCATCAGAACCTGTACTGCACCCTTTCATCGTTTTCCCTCCCATTCCTTT
TCCCCTCGTTGTGCCTCGTTGTTCCTTGGTTCCTTCTTCAAATAAGTTTT
TGGACGCAGCGGCTGAAGCAGCGGCTGACCGAGTGGTACCTGCGCCGTTC
GATTCTCCGAGAGCTGATTGAGGATGCCGAGAGGGCTGACTCCGATCACG
AGCTGGAAGTAGATCTAGAACAAGGCTCTCGCAAAGACTCGGAGGAGGAG
GAACCGCGAGACGACAAAAAAGAACAGACAACAGAGGGAGGCGGAAGCGA
AGCCACAACAGATGTGCCGCGGGGTGGCCCCAATGAAAACAACGACGCCG
CCAAAGCGGAGCATGGCACTACCGCGCCGGAGACAATGGTGCAGGCCGGA
GGAGGTATCGGCAGCGGCAGCGGCGGCGGTGGAGTTGAGGAAACGAAGGG
GAATTGCGGGGACGCGGAGGACACGAAGCAGCAGGCCGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4952:2350..5689+ >mRNA_H-paniculata_contig4952.12140.1 ID=mRNA_H-paniculata_contig4952.12140.1|Name=mRNA_H-paniculata_contig4952.12140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3312bp|location=Sequence derived from alignment at H-paniculata_contig4952:2350..5689+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCCAATGGAGACGACGCGCCAAAACCAAGACCGCGAGGACGGCCGAA GGGCAGCGGAAAGAAGAAGCAGACCACGCCGTCCGGCCCACCATCCTCTT CTTCGTCGTCGGTAGTATCGACGGCGGGATCCACTGCGGACTCCCGTGGT CCAGGTGTGTCAAGCGGTGCCGACAGCCAAGTCGTCGATGTTGCGGTGGC GGCGTCCACATCCGTTTCTGTCAGCGCTAGCTCTAACGAAGTTGGCAAGG GTCGTGCGCTAGCGAATGCCGACACCCACCTTTCAGCAGCCGCTTCTCCT CCGAAGAAAGGACGCGGGCGCCCGCCCTCGAAGTCTCGGAAGACGGTTGT AGTAACTACGTCAGCAGAATCAGCAGCGATAGTAGCGGGGAGCGATGCGC AAGGTCGGTCTAGCACACCCGAGAATGCGGCAGGGAAGAACGGAAACGTG AGTGCGAAAGACGAAGCGGAATCGGCGAAGCAGACGAGCAGTAGCAGCGC TGGAAGAAATGGGAGTGTGGAGGTATCCACGTTAGGCCCCTCCTCCGCCG GTGGCGGAACTGGCAAGAGGAAAGACGCGGCGGTTGTCGTCAAGAAGAGC CACAAGAAAATCAGACCGGCGGGGTCGGAGCGGACTGCTGGATCACGTTT GCAGCCGCGACGAGGAGTCAAGGTGGTGGACCCTTCTATACCAGGCGGGG GACTGTCGGTATACACTCCATCATCCCCGAGAGGTAGCATCGAAAACAGC AGCAGCAGGAAAACGCAGGGAAAGGTGTGCGTTGCGTCTGCCTACCCGAA GAGGGCCAGATGGCCAATGGAGACGACGCGCCAAAACCAAGACCGCGAGG ACGGCCGAAGGGCAGCGGAAAGAAGAAGCAGACCACGCCGTCCGGCCCAC CATCCTCTTCTTCGTCGTCGGTAGTATCGACGGCGGGATCCACTGCGGAC TCCCGTGGTCCAGGTGTGTCAAGCGGTGCCGACAGCCAAGTCGTCGATGT TGCGGTGGCGGCGTCCACATCCGTTTCTGTCAGCGCTAGCTCTAACGAAG TTGGCAAGGGTCGTGCGCTAGCGAATGCCGACACCCACCTTTCAGCAGCC GCTTCTCCTCCGAAGAAAGGACGCGGGCGCCCGCCCTCGAAGTCTCGGAA GACGGTTGTAGTAACTACGTCAGCAGAATCAGCAGCGATAGTAGCGGGGA GCGATGCGCAAGGTCGGTCTAGCACACCCGAGAATGCGGCAGGGAAGAAC GGAAACGTGAGTGCGAAAGACGAAGCGGAATCGGCGAAGCAGACGAGCAG TAGCAGCGCTGGAAGAAATGGGAGTGTGGAGGTATCCACGTTAGGCCCCT CCTCCGCCGGTGGCGGAACTGGCAAGAGGAAAGACGCGGCGGTTGTCGTC AAGAAGAGCCACAAGAAAATCAGACCGGCGGGGTCGGAGCGGACTGCTGG ATCACGTTTGCAGCCGCGACGAGGAGTCAAGGTGGTGGACCCTTCTATAC CAGGCGGGGGACTGTCGGTATACACTCCATCATCCCCGAGAGGTAGCATC GAAAACAGCAGCAGCAGGAAAACGCAGGGAAAGGTGTGCGTTGCGTCTGC CTACCCGAAGAGGGCCAGGAATGCGCCCGACGTTTTCAAAGCAGGACCCT CAATGAAGCCGCCATCAACCCCTCCCTCGGTGCCGGCGAAAGGCAGCGGA AAGGGAACCGCACAGGTTTCTGCCAGTGCCAATGGGAAGAAGGGGTCGGC TAAGAAACACACCCCGGCTAAGAAGAAGGTGGAACTACCGCCTCCGCCTC CGCCCCCGCCACCACCGTACCATTTCAAGTATTCCGGCTGGCCAGTGGTC GGAGGTCGGGAGTTGATATCGGTAGGGCTGTTCATCAATGCAGCTCTCCC TGTCCTAAGGAATGCGCCCGACGTTTTCAAAGCAGGACCCTCAATGAAGC CGCCATCAACCCCTCCCTCGGTGCCGGCGAAAGGCAGCGGAAAGGGAACC GCACAGGTTTCTGCCAGTGCCAATGGGAAGAAGGGGTCGGCTAAGAAACA CACCCCGGCTAAGAAGAAGGTGGAACTACCGCCTCCGCCTCCGCCCCCGC CACCACCGTACCATTTCAAGTATTCCGGCTGGCCAGTGGTCGGAGGTCGG GAGTTGATATCGGTAGGGCTGTTCATCAATGCAGCTCTCCCTGTCCTAAG GTTAGGGCGCAACTACGAGGTGAGAATGCGAGAGCTCGAGCAAGCGGTAG CTTCTCCTCGTCCGATGGAAAACTCGCTGCTAGGAATGATCCATGCCCGT CTCCTGGCCTCGCGCAAGGAGCTGAAGGCCATGCGAATGGGAGAGGATAC GTTTACGTACAGGTTAGGGCGCAACTACGAGGTGAGAATGCGAGAGCTCG AGCAAGCGGTAGCTTCTCCTCGTCCGATGGAAAACTCGCTGCTAGGAATG ATCCATGCCCGTCTCCTGGCCTCGCGCAAGGAGCTGAAGGCCATGCGAAT GGGAGAGGATACGTTTACGTACAGTTTTTGGACGCAGCGGCTGAAGCAGC GGCTGACCGAGTGGTACCTGCGCCGTTCGATTCTCCGAGAGCTGATTGAG GATGCCGAGAGGGCTGACTCCGATCACGAGCTGGAAGTAGATCTAGAACA AGGCTCTCGCAAAGACTCGGAGGAGGAGGAACCGCGAGACGACAAAAAAG AACAGACAACAGAGGGAGGCGGAAGCGAAGCCACAACAGATGTGCCGCGG GGTGGCCCCAATGAAAACAACGACGCCGCCAAAGCGGAGCATGGCACTAC CGCGCCGGAGACAATGGTGCAGGCCGGAGGAGGTATCGGCAGCGGCAGCG GCGGCGGTGGAGTTGAGGAAACGAAGGGGAATTGCGGGGACGCGGAGGAC ACGAAGCAGCAGGCCGGGTTTTTGGACGCAGCGGCTGAAGCAGCGGCTGA CCGAGTGGTACCTGCGCCGTTCGATTCTCCGAGAGCTGATTGAGGATGCC GAGAGGGCTGACTCCGATCACGAGCTGGAAGTAGATCTAGAACAAGGCTC TCGCAAAGACTCGGAGGAGGAGGAACCGCGAGACGACAAAAAAGAACAGA CAACAGAGGGAGGCGGAAGCGAAGCCACAACAGATGTGCCGCGGGGTGGC CCCAATGAAAACAACGACGCCGCCAAAGCGGAGCATGGCACTACCGCGCC GGAGACAATGGTGCAGGCCGGAGGAGGTATCGGCAGCGGCAGCGGCGGCG GTGGAGTTGAGGAAACGAAGGGGAATTGCGGGGACGCGGAGGACACGAAG CAGCAGGCCGGG back to top
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