mRNA_H-paniculata_contig49480.12133.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49480.12133.1
Unique NamemRNA_H-paniculata_contig49480.12133.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.060e-10
Identity = 53/186 (28.49%), Postives = 81/186 (43.55%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICTICKRIGHGESSHRLSAIFSSDGFRDIVEHRFTARVAG--QGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRG-EIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTACLKEEGAAIALPNGS 549
            CF C +PGHL+ NC +++    K   +  SS        SD  +    H  T  +A    GE A                    W+ DSGA+AHMT        +E     ++T+A+G+   I G G  ++   D   E+ +  +S V +VPGL TNL S++ +  + L      +G  I  P G+
Sbjct:  212 CFYCKKPGHLQRNC-RKLLEAKKEENNTSSSGTKPK--KSDSVKAKAVHSDTRGIAFVVNGENA------------------RSWIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGN 376          
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: A0A8J6LGS5_TENMO (Anoctamin n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LGS5_TENMO)

HSP 1 Score: 63.5 bits (153), Expect = 2.090e-8
Identity = 50/185 (27.03%), Postives = 78/185 (42.16%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICTICKRIGHGESSHRLSAIFSSDGFRDIVEHRFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYET-CSNLFVTVANGETLPIEGYGKMLV-WTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTACLKEEGAAIALPNGS 549
            CF+C++PGH+  NCP +  T    +   + ++                   T+R  G   F SV + I E          E W+ADSGA+AHMT +     +Y    +   + V N E +   G G++ V         H+  L+ V  VP +  NL S+   ++ G T    ++G      NGS
Sbjct: 1341 CFKCHQPGHIAKNCPNKKATANSDVREKKGAN-------------------TSRAEGDA-FVSVFDEIAES---------EMWLADSGASAHMTRNRNYFVNYTPFAAPKVICVGNNEKILAYGCGQINVEMNVGNSTWHQNHLNNVWFVPDIGRNLMSVGQTISNGFTFEANDKGCCFK-KNGS 1495          
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 62.4 bits (150), Expect = 5.030e-8
Identity = 48/164 (29.27%), Postives = 76/164 (46.34%), Query Frame = 1
Query:   13 NEPGHLKMNCPQRICTICKRIGHGESSHRLSAIFSSDGFRDIVEHRFTARVAGQGEFASVIELIEEDKPVPVDGCE--EFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQG 495
            N  G+ K N    +CT C+R GH ES+         D  +        ARVA    F +      + +    D     + W+ DSGA+ H TP   ++ DY+T    + V  A G+   I G G + +  + +G     +L +V HVPG+D+NL S  +++ +G
Sbjct:  235 NSSGNSKSNL---LCTHCQRKGHVESTCWTKYPHLKDKSKPTTTGE--ARVA----FCATTRTARKAQSGKNDEYSNPKHWILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLSSNVLLGKG 388          
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: A0A438GAQ9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GAQ9_VITVI)

HSP 1 Score: 62.0 bits (149), Expect = 6.750e-8
Identity = 53/163 (32.52%), Postives = 77/163 (47.24%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICTICKRIGHGESSHRLSAIFS--SDGFRDIVEHRFTARVAGQGEFAS---VIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 474
            CF C+E GH K NC +++    +RI     +   +A FS  SD    +    F+     Q    +   V  L E  K   V    + W+ DSGAT HMT +++    + T S   VTVA+G T  I+G+G +    K    I   +LS V ++P L  NL S+
Sbjct:  166 CFYCHEAGHTKKNC-RKLQNRNRRIQTANVATSDTATFSDSSDKIVTMTAEEFSKYSQYQDALKASTPVSALAESGKTCLVSSSNK-WIIDSGATDHMTGNHKTFSTFRTHSTPPVTVADGSTYEIKGFGTV----KPTSSI---TLSSVLNLPNLAFNLISV 319          
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: A0A8D8KT35_CULPI (Copia protein n=6 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8KT35_CULPI)

HSP 1 Score: 61.6 bits (148), Expect = 8.580e-8
Identity = 50/178 (28.09%), Postives = 72/178 (40.45%), Query Frame = 1
Query:    1 CFQCNEPGHLKMNCPQRICTICKRIGHGESSHRLSAIFSSDGFRDIVEHRFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTACLKEEGAAI 531
            C+ C EPGH K+NCP+      K  G G +  + +    SD        R  A   G          +E +           WV DSGA+AHMT                +T+ANG    I G G   +V      +  K S+S V  VPGL T+L S+  +  +  +    ++G +I
Sbjct:  214 CYNCGEPGHFKVNCPELAEDQRKSAGGGNAKAKAA---QSDA-------RCVAFTTG----------VERNAR---------WVIDSGASAHMTNDRSFFTSLSEFDGGGITLANGTKTAICGVGSGEVVGIDGEAQPVKISISEVKFVPGLTTSLISVGKLAEKDFSVVFDKKGCSI 362          
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.230e-7
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  247 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLT 501
            W+ DSGAT+HMTP  E +FD E T S++ VT+A+G+ L + G G + + + +   I    +  V ++PGLD  L S+  +  +GLT
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.430e-7
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  247 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTACLKEEGAAI 531
            W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+  +  +G++   ++    I
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVI 355          
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.680e-7
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  247 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGL 498
            W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+  +  +GL
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGL 241          
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.240e-7
Identity = 31/96 (32.29%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  247 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTACLKEEGAAI 531
            W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S+  +  +G++   +     I
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVI 337          
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.920e-7
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query:  247 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTACLKEEGAAI 531
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S++ +  +G++   +++   I
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTI 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49480.12133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q967L5_AEDAE2.060e-1028.49Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A8J6LGS5_TENMO2.090e-827.03Anoctamin n=1 Tax=Tenebrio molitor TaxID=7067 RepI... [more]
A0A535F6U2_9CHLR5.030e-829.27DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A438GAQ9_VITVI6.750e-832.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A8D8KT35_CULPI8.580e-828.09Copia protein n=6 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A2P4XNP3_9STRA1.230e-739.53Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A329SN38_9STRA1.430e-734.38Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA2.680e-738.82CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A225UGS0_9STRA4.240e-732.29Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3X5U6_9STRA8.920e-733.33CCHC-type domain-containing protein n=5 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49480contigH-paniculata_contig49480:581..1138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930459.717315-CDS-H-paniculata_contig49480:580..11381622930459.717315-CDS-H-paniculata_contig49480:580..1138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49480 581..1138 +
1691481301.495001-CDS-H-paniculata_contig49480:580..11381691481301.495001-CDS-H-paniculata_contig49480:580..1138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49480 581..1138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49480.12133.1prot_H-paniculata_contig49480.12133.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49480 581..1138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49480.12133.1

>prot_H-paniculata_contig49480.12133.1 ID=prot_H-paniculata_contig49480.12133.1|Name=mRNA_H-paniculata_contig49480.12133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
CFQCNEPGHLKMNCPQRICTICKRIGHGESSHRLSAIFSSDGFRDIVEHR
FTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELM
FDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPG
LDTNLFSLQIVVNQGLTACLKEEGAAIALPNGSDLL
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mRNA from alignment at H-paniculata_contig49480:581..1138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49480.12133.1 ID=mRNA_H-paniculata_contig49480.12133.1|Name=mRNA_H-paniculata_contig49480.12133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=558bp|location=Sequence derived from alignment at H-paniculata_contig49480:581..1138+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAATTGTCCTCAGCG CATATGTACGATCTGCAAAAGGATCGGTCATGGCGAGAGCAGTCACAGGC TGTCGGCAATCTTCTCTTCGGACGGGTTCAGGGACATTGTTGAACACCGT TTCACGGCCAGAGTGGCAGGGCAGGGCGAGTTTGCTTCGGTAATTGAGCT TATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGG TGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGAATTAATG TTTGATTACGAAACCTGCAGTAATTTGTTTGTGACAGTGGCTAATGGCGA AACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAGGATC GGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGC CTGGACACAAATTTGTTTTCCCTACAGATTGTAGTGAACCAGGGACTTAC TGCCTGTTTGAAGGAGGAGGGTGCAGCAATTGCACTACCTAATGGGAGCG ATCTTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig49480:581..1138+

>mRNA_H-paniculata_contig49480.12133.1 ID=mRNA_H-paniculata_contig49480.12133.1|Name=mRNA_H-paniculata_contig49480.12133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig49480:581..1138+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAATTGTCCTCAGCG
CATATGTACGATCTGCAAAAGGATCGGTCATGGCGAGAGCAGTCACAGGC
TGTCGGCAATCTTCTCTTCGGACGGGTTCAGGGACATTGTTGAACACCGT
TTCACGGCCAGAGTGGCAGGGCAGGGCGAGTTTGCTTCGGTAATTGAGCT
TATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGG
TGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGAATTAATG
TTTGATTACGAAACCTGCAGTAATTTGTTTGTGACAGTGGCTAATGGCGA
AACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAGGATC
GGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGC
CTGGACACAAATTTGTTTTCCCTACAGATTGTAGTGAACCAGGGACTTAC
TGCCTGTTTGAAGGAGGAGGGTGCAGCAATTGCACTACCTAATGGGAGCG
ATCTTTTGTGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAATTGT
CCTCAGCGCATATGTACGATCTGCAAAAGGATCGGTCATGGCGAGAGCAG
TCACAGGCTGTCGGCAATCTTCTCTTCGGACGGGTTCAGGGACATTGTTG
AACACCGTTTCACGGCCAGAGTGGCAGGGCAGGGCGAGTTTGCTTCGGTA
ATTGAGCTTATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGA
GTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACG
AATTAATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACAGTGGCT
AATGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGAC
GAAGGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATG
TTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGATTGTAGTGAACCAG
GGACTTACTGCCTGTTTGAAGGAGGAGGGTGCAGCAATTGCACTACCTAA
TGGGAGCGATCTTTTG
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