mRNA_H-paniculata_contig4942.12129.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4942.12129.1
Unique NamemRNA_H-paniculata_contig4942.12129.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 2.760e-95
Identity = 144/222 (64.86%), Postives = 176/222 (79.28%), Query Frame = 3 
Query:  108 MVRYTAAFALAALGCLANA-----DIVKYKVRIRNLTYMQPFSPPLIAAHTKALSVFQEGKPAIDAVKLMAEDGDNSALLAFADDPFVMENACGVVVADGPLLPGKTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGASKVFPPAFDAGTEMNNELCSHIPGPACTTESGNQEATPGEGYIHVHRGVHGIGDITADVYDWRNPVAEIFIE 758
            MV +TAAFA+A+L  LANA     + V +KVR+RNLTY+QPFSPPLI AHTK +++F+EG PA DA+KLMAEDGDNSALL  ++   V    CGVVVA+GP+ PG+TWRG L+VD  IC +PVYSVV ML+NTNDAFVG+DS+ L   G++K FPPAFDAGTE+N+E CS+IPGP C   SGN +  PGEGYIHVHRGVHG+GD+    YDWRNPVAEI+I+
Sbjct:    1 MVNFTAAFAMASLVSLANASGKDYNTVPFKVRVRNLTYLQPFSPPLIVAHTKDVALFKEGFPANDAIKLMAEDGDNSALLELSESSDVAPYICGVVVAEGPVFPGETWRGQLDVDPYICPNPVYSVVTMLINTNDAFVGIDSDTLEL-GSTKAFPPAFDAGTEVNDERCSNIPGPGCPAGSGNNQNGPGEGYIHVHRGVHGVGDLEEASYDWRNPVAEIYIQ 221
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BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 7.400e-94
Identity = 140/217 (64.52%), Postives = 168/217 (77.42%), Query Frame = 3 
Query:  108 MVRYTAAFALAALGCLANADIVKYKVRIRNLTYMQPFSPPLIAAHTKALSVFQEGKPAIDAVKLMAEDGDNSALLAFADDPFVMENACGVVVADGPLLPGKTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGASKVFPPAFDAGTEMNNELCSHIPGPACTTESGNQEATPGEGYIHVHRGVHGIG-DITADVYDWRNPVAEIFI 755
            MV++TA FALA++  LA+A    +KVR+RNLTY+QPFSP L+ AHT  +++F+EG PA DA+KLMAEDGDNSALL  A    V    CG V  +GP+ PG+TWRGTL +D   C DPVYSVV ML+NTNDAFVG+DS+ L  YG+SKVFPPAFDAGTE NNELC+HIPGPAC  +SGN E  PGE +IHVHRG HG+G D+    YDWRNPVAE+FI
Sbjct:    1 MVKFTAGFALASVLSLAHAT--DFKVRVRNLTYLQPFSPMLVVAHTNDVALFKEGLPASDAIKLMAEDGDNSALLELAASDDVAPYICGAVAGEGPVFPGETWRGTLTIDESACPDPVYSVVSMLINTNDAFVGIDSDDLNVYGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDVPGEEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFI 215
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BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 7.530e-77
Identity = 124/205 (60.49%), Postives = 146/205 (71.22%), Query Frame = 3 
Query:  153 LANADIVKYKVRIRNLTYMQPFSPPLIAAHTKALSVFQEGKPAIDAVKLMAEDGDNSALLAFADDPFVMENACGVVVADGPLLPGKTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGASKVFPPAFDAGTEMNNELCSHIPGPACTTESGNQEATPGEGYIHVHRGVHGIG-DITADVYDWRNPVAEIFIEAS 764
            +ANA  V   VR+RNLTY+QPFSP  + AHT  +S+F+EG PA DAVK+MAEDGDNSAL+       V    CG V+ + PL PG TWRG + VD  IC D  YSVV ML+NTNDAFVG+DS +L   G  KVFPPAFDAGTE NNELC+HIPGPAC  +SGN E  PGEG+I V RG HG+G D+    YDWRNPVAE+ +  S
Sbjct:    1 MANAGEVY--VRVRNLTYLQPFSPMFVVAHTNDVSIFREGFPASDAVKIMAEDGDNSALVELLASEDVEPYICGGVMGEAPLFPGDTWRGVMTVDESICPDAQYSVVSMLINTNDAFVGIDSNRL--VGTEKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDGPGEGFISVSRGFHGVGPDLGEANYDWRNPVAEVVVATS 201
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BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: D7G3Z4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z4_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 3.410e-60
Identity = 103/196 (52.55%), Postives = 130/196 (66.33%), Query Frame = 3 
Query:  174 KYKVRIRNLTYMQPFSPPLIAAHTKALSVFQEGKPAIDAVKLMAEDGDNSALLAFADDPFVMENACGVVVADGPLLPGKTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGASKVFPPAFDAGTEMNNELCSHIPGPACTTESGNQE--ATPGEGYIHVHRGVHGIGDITADVYDWRNPVAEIFI 755
            K KVR+ NLT+ Q FSPP+I AH K   +F  G  A  A+KLMAEDG+N  ++A A         CG   A+GPLLPGKTW G +  DTD CK+PVYSVV  L NTNDAF+G+D  K      SK+FPPAFDAGTE NNE C+ +PG AC     ++E      EG+IHVHRG++G+GD++   Y W+NPVAE+ +
Sbjct:   74 KGKVRVTNLTFKQDFSPPIIVAHEKGSHLFPVGGKARPAIKLMAEDGNNRNIMAIATRE---GGFCGFAAAEGPLLPGKTWNGEITFDTDKCKEPVYSVVAKLTNTNDAFMGIDGSKFLDKHPSKLFPPAFDAGTEKNNEKCTCMPGRACPASPKSRENHGLGSEGFIHVHRGINGVGDLSKADYGWKNPVAEVVV 266
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BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: D7G413_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G413_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 6.820e-59
Identity = 102/198 (51.52%), Postives = 130/198 (65.66%), Query Frame = 3 
Query:  177 YKVRIRNLTYMQPFSPPLIAAHTKALSVFQEGKPAIDAVKLMAEDGDNS--ALLAFADDPFVMENACGVVVADGPLLPGKTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGASKVFPPAFDAGTEMNNELCSHIPGPACTTESGNQEATPG---EGYIHVHRGVHGIGDITADVYDWRNPVAEIFI 755
            YKVR+ NLT+ Q FSPP+I AH K   +F +G+ A  A+K MAE+G N    ++A  +D F     CG   A+GPLLPGKTW G +  D + CK PVYSVV  L NTNDAF+G+D  K      SK+FPPAFDAGTE NNE C+ I G AC      +E   G   EG+IHVHRG++G+GD++   YDW+NPVAE+ +
Sbjct:    4 YKVRVTNLTFKQDFSPPIIVAHEKGSPLFSKGRKARGAIKRMAEEGVNRFIEIIATREDGF-----CGFAAAEGPLLPGKTWNGEITFDANKCKRPVYSVVAKLTNTNDAFMGIDGSKFLDKRPSKLFPPAFDAGTEKNNEKCTCIRGRACPASPKPRENLGGRGSEGFIHVHRGINGVGDLSQADYDWKNPVAEVVV 196
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BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: D7G405_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G405_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.040e-57
Identity = 103/211 (48.82%), Postives = 132/211 (62.56%), Query Frame = 3 
Query:  132 ALAALGCLANADIVKYKVRIRNLTYMQPFSPPLIAAHTK-ALSVFQEGKPAIDAVKLMAEDGDNSALLAFADDPFVMENACGVVVADGPLLPGKTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGASKVFPPAFDAGTEMNNELCSHIPGPACTTESGNQE--ATPGEGYIHVHRGVHGIGDITADVYDWRNPVAEIFI 755
            +LA+ G  + + +  YKVR+ NLT+ Q FSPP+I AH K +  +F  G  A  A+K MAE+G N  +   A         CG  VA+GPLLPGKTW G +  DT+ CK+PVYSVV  L NTNDAF+G+D  K      SK FPPAFDAGTE NNE C+ +PG AC      +E      EG+IHVHRG+ G+GD++   Y W NPVAE+ +
Sbjct:    3 SLASGGSTSGSSMKTYKVRVTNLTFKQDFSPPIIVAHEKGSRPLFSMGGKARPAIKRMAEEGVNGMVKVIATRE---SGFCGFAVAEGPLLPGKTWNGEITFDTNKCKEPVYSVVAKLTNTNDAFMGIDGSKFLDKCPSKRFPPAFDAGTEKNNEKCTCMPGRACPASPKTRENHGRGSEGFIHVHRGIDGVGDLSKADYGWNNPVAEVVV 210
[Close]
BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: D7G3Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z6_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.120e-47
Identity = 100/231 (43.29%), Postives = 138/231 (59.74%), Query Frame = 3 
Query:  108 MVRYTAAFALAALGCLANADIVK------YKVRIRNLTYMQPFSPPLIAAHTK-ALSVFQEGKPAIDAVKLMAEDG--DNSALLAFADDPFVMENACGVVVAD--GPLLPGKTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGA-SKVFPPAFDAGTEMNNELCSHIPGPAC---TTESGNQEATPGEGYIHVHRGVHGIGDITADVYDWRNPVAEIFI 755
            MV++    ALA++  LA+   ++      YKVR+ NLT+ Q FS  +I AH K +  +F EG  A +A+ ++AE+G   N   +A  +  F     CG    +  G + PGKTW G ++ D + CKDPVYSVV  L NTNDAF+G+   K P     SK FPPAFDAG+E NNE C+ +PG AC   T ++  +     EG+IHVHRG  GIGD++ D Y W+NPVA + +
Sbjct:    1 MVKFAFGLALASMLSLASGSKMRGSRMQTYKVRVTNLTFKQDFSAAIIVAHEKGSRPLFSEGAKARNAISMLAEEGLSGNVQNIATRERGF-----CGFAAPESKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPAGSCPSKHFPPAFDAGSETNNEKCTCMPGRACPKGTRDARERHGRNSEGFIHVHRGFQGIGDLSKD-YGWQNPVAVVVV 225
[Close]
BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: A0A2A5G8K9_9GAMM (Spondin domain-containing protein n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A2A5G8K9_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 1.520e-40
Identity = 87/220 (39.55%), Postives = 130/220 (59.09%), Query Frame = 3 
Query:   99 KEIMVRYTAAFALAALGCLANADIVKYKVRIRNLTYMQPFSPPLIAAHTKALSVFQEGKPAIDAVKLMAEDGDNSALLAFADDPFVMENACGVVVADGPLL-PGKTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGASKVFPPAFDAGTEMNNELCSHIPGPACTTESGNQEATPGEGYIHVHRGVHGIGDITADVYDWRNPVAEIFI 755
            K + V       LA+    A   +  Y V I NLT    F+P L+A+H   +++F+ G  A + +  +AE GD + L A        +N    V + G LL PG++   T+E+ T+  K  + SV  M++ TND F+ + + K+P   +  V+ P +DAGTE N+E+C++IPGP C  E  + E + GEGY+H++RG+HGIGD+ ADVYDWRNPVA+I I
Sbjct:    7 KALQVAAIGGLLLASSSATAGNKVRVYDVTITNLTNSITFTPILVASHRNGVTLFEAGSAASEGLTAIAEGGDTAPLAASLS----ADNRVAEVKSSGGLLGPGESV--TVEIKTERHKRRI-SVASMMLPTNDGFIAIQNIKVPKKRSKTVYSPGYDAGTEPNDEVCANIPGPTCGGEGLSPEVS-GEGYVHINRGIHGIGDLAADVYDWRNPVAKITI 218
[Close]
BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: A0A3B0WS64_9ZZZZ (Spondin domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0WS64_9ZZZZ)

HSP 1 Score: 150 bits (379), Expect = 1.020e-38
Identity = 90/220 (40.91%), Postives = 131/220 (59.55%), Query Frame = 3 
Query:  126 AFALAALGCLANADIVK------YKVRIRNLTYMQPFSPPLIAAHTKALSVFQEGKPAIDAVKLMAEDGDNSALLAF--ADDPFVMENACGVVVADGPLLPGKTWRGTLEVDTDICKDPV--YSVVGMLVNTNDAFVGVDSEKLPYYGASKVFPPAFDAGTEMNNELCSHIPGPACTTESGNQEATPGEGYIHVHRGVHGIGDITADVYDWRNPVAEIFI 755
            A   AA+G L  A  V       Y V I NLT    F+P L+A+  + +++F+ G  A   + ++AE GD S L A   AD+   ++N+ G+      L PG++   T+E+   I K  V   SV  M++ TND F+ + + K P  G+  ++ P +DAGTE N+E+C++IPGP C  E  + E   GEGY+H++RG+HGIGD+ ADVYDWRNPVA+I I
Sbjct:    8 ALQTAAIGSLLLASSVASAGDRVYDVTITNLTNSINFTPILVASTRRGVTIFETGSAASAGLTVIAESGDASVLAATLSADEAADVQNSGGL------LGPGESV--TVEI---ITKSHVRHISVASMMLPTNDGFIAIQNIKAPKKGSKTIYSPGYDAGTEPNDEVCANIPGPTCGGEGSSPEVD-GEGYVHINRGIHGIGDLAADVYDWRNPVAKITI 215
[Close]
BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Match: A0A7Y2PB87_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y2PB87_9DELT)

HSP 1 Score: 150 bits (378), Expect = 1.890e-38
Identity = 83/198 (41.92%), Postives = 117/198 (59.09%), Query Frame = 3 
Query:  174 KYKVRIRNLTYMQPFSPPLIAAHTKALSVFQEGKPAIDAVKLMAEDGDNSALLAFADD-PFVMENACGVVVADGPLLPGKTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGASKVFPPAFDAGTEMNNELCSHIPGPACTTESGNQEATPGEG---YIHVHRGVHGIGDITADVYDWRNPVAEIFI 755
            KY V I NLT  Q  +PP++  H +   +F  G+PAI  +  +AEDG    LL      P V+       +A GPL+PG++   T+EV       P+ +V GML ++NDAF  +  +++P +G S  +  A+DAG+E N ELC  IPGP C    GN+E    EG   Y+HVH G+HGIGD+  +V+DWRNPVA++ I
Sbjct:   38 KYAVTITNLTRGQVITPPVVIVHNEKFRLFVPGEPAIPELAALAEDGITGPLLGLLPGLPSVLRGT----MAPGPLMPGESV--TVEVRAK-WNYPLVTVAGMLASSNDAFFAIRGKRVPVFGKSATYAVAYDAGSEANLELCDQIPGPPC----GNEEVRHTEGAENYVHVHSGIHGIGDLLPEVFDWRNPVAKVVI 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4942.12129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIE5_ECTSI2.760e-9564.86Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
D7G4K4_ECTSI7.400e-9464.52Spondin domain-containing protein n=3 Tax=Ectocarp... [more]
D7G4K3_ECTSI7.530e-7760.49Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
D7G3Z4_ECTSI3.410e-6052.55Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G413_ECTSI6.820e-5951.52Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G405_ECTSI1.040e-5748.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Z6_ECTSI2.120e-4743.29Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A2A5G8K9_9GAMM1.520e-4039.55Spondin domain-containing protein n=1 Tax=Thiotric... [more]
A0A3B0WS64_9ZZZZ1.020e-3840.91Spondin domain-containing protein n=1 Tax=hydrothe... [more]
A0A7Y2PB87_9DELT1.890e-3841.92Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4942contigH-paniculata_contig4942:8959..14088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.5
Seed ortholog evalue2.6e-78
Seed eggNOG ortholog2880.D7FIE5
Hectar predicted targeting categorysignal peptide
EggNOG OGs28TMI@1,2S5Q9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1592
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4942.12129.1prot_H-paniculata_contig4942.12129.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4942 9066..13266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930459.0702126-UTR-H-paniculata_contig4942:8958..90651622930459.0702126-UTR-H-paniculata_contig4942:8958..9065Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4942 8959..9065 +
1691481301.19038-UTR-H-paniculata_contig4942:8958..90651691481301.19038-UTR-H-paniculata_contig4942:8958..9065Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4942 8959..9065 +
1622930459.2010536-UTR-H-paniculata_contig4942:13266..140881622930459.2010536-UTR-H-paniculata_contig4942:13266..14088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4942 13267..14088 +
1691481301.2661085-UTR-H-paniculata_contig4942:13266..140881691481301.2661085-UTR-H-paniculata_contig4942:13266..14088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4942 13267..14088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930459.0880985-CDS-H-paniculata_contig4942:9065..91401622930459.0880985-CDS-H-paniculata_contig4942:9065..9140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 9066..9140 +
1691481301.2016149-CDS-H-paniculata_contig4942:9065..91401691481301.2016149-CDS-H-paniculata_contig4942:9065..9140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 9066..9140 +
1622930459.108195-CDS-H-paniculata_contig4942:9760..98261622930459.108195-CDS-H-paniculata_contig4942:9760..9826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 9761..9826 +
1691481301.2129462-CDS-H-paniculata_contig4942:9760..98261691481301.2129462-CDS-H-paniculata_contig4942:9760..9826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 9761..9826 +
1622930459.1215427-CDS-H-paniculata_contig4942:10617..107011622930459.1215427-CDS-H-paniculata_contig4942:10617..10701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 10618..10701 +
1691481301.2229936-CDS-H-paniculata_contig4942:10617..107011691481301.2229936-CDS-H-paniculata_contig4942:10617..10701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 10618..10701 +
1622930459.136047-CDS-H-paniculata_contig4942:11437..115881622930459.136047-CDS-H-paniculata_contig4942:11437..11588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 11438..11588 +
1691481301.231998-CDS-H-paniculata_contig4942:11437..115881691481301.231998-CDS-H-paniculata_contig4942:11437..11588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 11438..11588 +
1622930459.1538048-CDS-H-paniculata_contig4942:12523..126131622930459.1538048-CDS-H-paniculata_contig4942:12523..12613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 12524..12613 +
1691481301.2422469-CDS-H-paniculata_contig4942:12523..126131691481301.2422469-CDS-H-paniculata_contig4942:12523..12613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 12524..12613 +
1622930459.1769247-CDS-H-paniculata_contig4942:13069..132661622930459.1769247-CDS-H-paniculata_contig4942:13069..13266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 13070..13266 +
1691481301.2518265-CDS-H-paniculata_contig4942:13069..132661691481301.2518265-CDS-H-paniculata_contig4942:13069..13266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4942 13070..13266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4942.12129.1

>prot_H-paniculata_contig4942.12129.1 ID=prot_H-paniculata_contig4942.12129.1|Name=mRNA_H-paniculata_contig4942.12129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MVRYTAAFALAALGCLANADIVKYKVRIRNLTYMQPFSPPLIAAHTKALS
VFQEGKPAIDAVKLMAEDGDNSALLAFADDPFVMENACGVVVADGPLLPG
KTWRGTLEVDTDICKDPVYSVVGMLVNTNDAFVGVDSEKLPYYGASKVFP
PAFDAGTEMNNELCSHIPGPACTTESGNQEATPGEGYIHVHRGVHGIGDI
TADVYDWRNPVAEIFIEASG*
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mRNA from alignment at H-paniculata_contig4942:8959..14088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4942.12129.1 ID=mRNA_H-paniculata_contig4942.12129.1|Name=mRNA_H-paniculata_contig4942.12129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5130bp|location=Sequence derived from alignment at H-paniculata_contig4942:8959..14088+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTTCTCCCCCAGACGATCACTTTTGTTGTATCCTCCACACTCCTCTCA
CATAGTTAGACGACGGATAAACTCAGCGACCCGAACCCTCTCGAATAAAA
AGAAATCATGGTTCGCTATACGGCCGCTTTTGCTCTCGCTGCCCTGGGCT
GCTTGGCCAACGCGGACATCGTGAAGTACAAGGTATGTGTCAAGTGTGTG
ACATGCTTTGAGAGACTGAATCTCTCATGGTTCGCGGAGATGCTACACTG
AGTCTATTCTCCTCTATCGATGTAGTAAGGAAGGTTGCCACATTCGGTGA
GTAGCTTGTGAAGCCCAGACCGGGTTCGCTGGAAAGTTGCATTGTTCCCA
ATCTGCAAGTAGATATTGGTAAGTACCCTGTGATATGCGGTGTGGATGGT
TTGTCCGTCGTCGGACGGCGAACACTCTAATGTGTTTGTGTCACTTTGAT
GCGCAAGAACAACGTACGTCTATCGAATACTTCTTTCTTTCCACCCTGAA
CATAAGAACTCCACCCTAAACATAGAAAGAAAGAAGTATTCGATAGACGT
ACGTTGTTCTTGCGCATCAAAGTGACACAAACACATCGTATCGAATACTT
TACCTTCGGTATGGCTAGGTTACCATGTGCTTGAATCACGCGAGAAACTG
CAGTGTTAAGCAAGAATCACGCCGACTATTTCTATTTTACAGCAAAAAAT
ATCATCTGTCACAGTGCGGGTTAGGTGAAATCACAGTAGACTTAAAACAA
TTCTGTTCTTGTGATCGCTTGTGATCTTCTAGCCACCACTTCATTACCGC
AGGTGCGTATCAGGAACCTCACCTACATGCAGCCCTTCTCTCCCCCTCTG
ATCGCGGCGCACACCAAGGTGAGCCGGCGTATCTGCGAATAGCCTCACCT
ACTGTGCTTTTATGTCCATCACGTCGTTCTGGTTTTAGATGTGCAGCCAA
AGCCTGGTGTAGTGTTGCTCCAACTGCCGAAAAGAAAAAATGTGCCTCTG
AATACCAAAGATCGATCAGCAGTTGGTGGTGCAAAACAAGTATGAGATTA
ATTGCATGTACCTGTCACCTGTGCCAGCAAAATGCATCTGACGGACTTTC
ATACGAAATGTCTAAAGGGTCCACAAAGTTGTAGTCTGGGCTGACTGTAC
TTGTTCAGTTGCATCTGAACACGACTCCACAGTCATCACGTATCGAATTC
AGTATGAGCACGCTCTAATTCCTGATTATGTGACTGCTGCCACTGTTTCA
TACCAACCTCGAAATTGTCCTCCACAGTCCGATATATCAAAACGCGGGAA
GTTTTACTCATGTCTGGTAAGTATCGCTGTTGGTCGTGTTCGCCTGTAAT
CTCCAAAGATATTGCATTGTAGATGGTCTCACCAAGAGAGACTGAAAACA
TTTCAAGGGCCCGAAACCTTGAGATAAGGTGCGCGTCGAAATTGCGGGGG
CTGTTTCGAACACCTTCGTTTTTCCGTGAACGAAAGCCCCTCAAAAGTTT
CATGGTCGTTGTATAGGTCAGTAGTTTCGCCAAGAAATAATCGAACGGTA
TCATCTTTGACGACCAGTCTGTACCTTCCAAGGATATTTCCCTAGTGTGC
TTCCATTTGACACTAGCAAATGCTGAACGTCCCTCATGTCAATCACGCAC
GCAACACAGGCTCTCTCGGTGTTTCAGGAAGGAAAGCCCGCTATCGATGC
CGTGAAGCTCATGGCAGAGGATGGCGACAACTCGGCGCTACTTGTGAGAT
ACTCACCTGTCGGTAGTAGACATGCCGTGGTGTCTCAACACTCCGCCCAT
TATTGGTTGTGAGCTTTCAGGTCTCGGAGTGGGGAGGATGGCTATAAGAA
ACTGTGATCATCCCTGCTGAAATTTCATGGTCTTCGTGAATCCGGCACCC
GTTCTTTCTTTCCTTGTAAATCATATTTGGTGTCAGGATTCCTCGAGATG
CGAGTTCAATTTGGCAATCTATTTTGAAATAAATGTAGATAAAAGTGGGT
AATATCTTGAAAATCATGAAAGTTATTTATATATATCAGGAGACCCAGTT
ATTGACTTCGTGCGTTTTCCTTGTAGTATTTATTAACATGTTGATTATGG
TGTGAGTGGGAGTTGCACTGTTTATTACGTTTGATTTGACCTCTCAAACT
CGACAAGCTATGATGAGAGATCACGGCTTCCGGAGAGCGTAGGGCATGGA
CGAACTTCTCGTCATCGTTAGCTTGACGGTTATTATGTATTTGGCATGAA
GGACTCAAGTTGGACTCCTGGCGTTCGAGTTTGAAATTACCCACCTGCTC
CACCAGGTTCTACATCACGCTAACTACATTAAGTTTCTTGAGAAATATAT
TCCATCAGGGGGAGGAGTGTGATGAGGCTTAGCGGCCTCCTGTAAGAATA
CGGAATCGGGTCAACCTATTCCCTTCCTGCAAGAGATTGGCTCATTTCCC
GTTTTTTCTCTTTCGATTCGTGCTTCCAGGCTTTCGCCGACGACCCCTTT
GTGATGGAGAACGCTTGCGGTGTCGTTGTCGCAGACGGCCCCCTCCTCCC
CGGCAAGACCTGGCGGGGCACCTTGGAGGTGGACACCGACATCTGCAAGG
ATCCGGTGTACTCGGTGGTCGGCATGCTTGGTGAGTTACTTGACTTGTAG
TAAGTATCAAGGTATATCTAGCAGGCACGTTTTCCGTGGAAATTTCGTGC
TCGACACTTCGAGATTTTCGAGCAGACGGCCAGAAACAAACCGGAAGAGT
TGTCGGCCCATGTTCAGACGAAGCACGAAGACTGGTGTTTTTTGGAGTAA
TTTTAAACTCTTGTATCTCTTGGAATGACGGCCTGGAAACCTGAAAATTT
CTAGATTTATAATTCAATATCCTCGAAAAATGCGTTTGTAGTGTTTGCTT
TAGGGGACTGGAATTGGTGTGCTTTCCCCCCCCCGGAGTACCTTTCCGAC
AGTGTCACCGAAAGTTGTACAGAAAACGTCTGCTCCATGGAATTTGTATC
ATCAGTGGGAATAAGCCAAGTCCTGCTTGGGGGATCCGCGTTGTCACGAT
CGACTCGGCTCTATAGTTTACCCGTCATCGATGGGTGTCTACTGATCAAT
TCATGAAACTGCACATTACAGTCCGCTGTATGTTGTGATCGAGGTTCGGA
ATTTACTCTTGAAAACATTTTAGTTGGTAATGCGGAGGTTTGCCTCTTGG
TTTTCATGTGCCGGTCGTCCATATAAACATTTTTTCATGTTTCGCCTACG
GTGTTCATCAGAGTTGTACAGTGGTGCTTCCTTGTGGAGGCTGCTGTGGT
CGCCTTGGTATTTGTCTGGAGCGGTGCAAGAAGATCTGGAACTTGGTCAT
GATGAGAGAAGTATGAGTCGATCTTTCCCATTGTAATCAGCTGTAACTTC
AACGAGTGTATACTGAAGCTGTGTGAGCAGGGTCGACTTACGAACGGCTC
AAGTTTGTTCATGCATTCTACATGTGCTAACCCTCGCCACCCCGACCGCC
TCGTGTCGTCTGGTCCCTTGTTTTTTCGCCTATTGTACCTCTGGTGGCCG
TGACGTGAACTACAGTCAATACAAACGATGCCTTTGTGGGTGTCGACTCG
GAGAAGCTTCCGTATTACGGTGCCTCGAAGGTGTTCCCCCCAGCCTTCGA
TGCCGGTGAGATGAGCTATGAAAGTTCAGGCTTACACCTTTTTTTGTATT
AGCTCATCGGTAGGACGAGAAGAATCTGACGAGGGTACCCACCAGAGACC
TTTGCCCCAGAGCAGTGAGCACGTTTACATGAGAGCAGTAGAGTATGAAG
ACCCTTGGCGAACACATGGATACAGAGTCCTTAGCTTGCAGCCCTGTGCC
ACCGAATACCTGGTATAATAGTACTAGGGGAGGTGAGGGTCGAAAGGTTT
TGTTCTGTGGGCAGGCGAGTGGAATTATTTTGTGATTGTGTACCTAGTCG
ACTAGGTGTTGGAAGTGGTTATGATCAGGGTCAAAATTTGAATGGAGTAA
TCGTCCGTCTATATACACCATGAGATCAGCGAAGCCCCACGTTCCTCCTC
ACCCCCCACGCCCCCCTCATCGTCCCACGGGTACATCTCTTCCATGTCTT
GTGCGCATCAGGAACCGAGATGAACAACGAACTGTGCAGTCACATCCCCG
GCCCCGCCTGCACCACTGAAAGTGGCAACCAAGAAGCAACACCCGGAGAA
GGCTACATCCACGTGCACCGCGGTGTACATGGCATTGGCGACATCACGGC
GGATGTGTACGACTGGCGTAACCCTGTGGCGGAGATCTTTATTGAGGCCA
GTGGTTGACCGACTGGCTCATCAGTATCATCCGTTCATGCCCGTTTGAAT
TAGGAAGAATATGAATTTCGGAGTATTAGTTGGGAGTGAAGTAGTCTTGC
CTTGTTTGCATGTGTAGGGAGTCGGCACACTCCTAGTGTTCTGGTTCCCC
GTTGTTGAGCGTCTATTCCGTTGACGGGGGAAACTTGGGAGATAAAATTT
TTATGGGTCAATCTTCAATAAATTTGGATACGAGTGTTCTGTAGGGTATC
AATGTACTTGGAGACTAGTATTGCTAAGAGTGTTTTTTCCCACTTGGCTA
CCGGTTCCGAGGCACCCGTGGAGGGTGGATATGTTTACTGGTGCTGCTGA
TACACAGCATGAAGCAAGTTTGGTTGTCAGTCGCATATGGCATGTTTATA
TCAGGTGGACTAGTTCGTCACTGTATGGATTGAGAGGAGCAATGCATTTG
TCATCACATAGCAGGTGATCATCTGTATATCGATAATTTACCAATATCTT
ATTAATTGATGGAGGAGATATGCATCAAATTGTCGGCGGTAAAAATGATG
GACGAATCTTAGCTCCGCGTGAGATAACACGGCTTCCAATAGTTGTGGAA
TGCTTGCCCATTGTTCTCGATGATGTTCCTCCATCTGGAAGAAAACGTTC
GCCAGGCACCGTTCTCTTAGTCTTATTTGTACCCAGTTATACATGTATCG
GTCATATATAGGACGGCATACCGAGCGAAGGTAAAACGAAGGTTATATGG
ACAAGTGGGTGGACAGCTTGTGAATACTACGTGCAACGCGGGAGCGGCTA
ATTAACGATATATTGTTTATTGCATTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4942:8959..14088+

>mRNA_H-paniculata_contig4942.12129.1 ID=mRNA_H-paniculata_contig4942.12129.1|Name=mRNA_H-paniculata_contig4942.12129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig4942:8959..14088+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCGCTATACGGCCGCTTTTGCTCTCGCTGCCCTGGGCTGCTTGGC
CAACGCGGACATCGTGAAGTACAAGATGGTTCGCTATACGGCCGCTTTTG
CTCTCGCTGCCCTGGGCTGCTTGGCCAACGCGGACATCGTGAAGTACAAG
GTGCGTATCAGGAACCTCACCTACATGCAGCCCTTCTCTCCCCCTCTGAT
CGCGGCGCACACCAAGGTGCGTATCAGGAACCTCACCTACATGCAGCCCT
TCTCTCCCCCTCTGATCGCGGCGCACACCAAGGCTCTCTCGGTGTTTCAG
GAAGGAAAGCCCGCTATCGATGCCGTGAAGCTCATGGCAGAGGATGGCGA
CAACTCGGCGCTACTTGCTCTCTCGGTGTTTCAGGAAGGAAAGCCCGCTA
TCGATGCCGTGAAGCTCATGGCAGAGGATGGCGACAACTCGGCGCTACTT
GCTTTCGCCGACGACCCCTTTGTGATGGAGAACGCTTGCGGTGTCGTTGT
CGCAGACGGCCCCCTCCTCCCCGGCAAGACCTGGCGGGGCACCTTGGAGG
TGGACACCGACATCTGCAAGGATCCGGTGTACTCGGTGGTCGGCATGCTT
GGCTTTCGCCGACGACCCCTTTGTGATGGAGAACGCTTGCGGTGTCGTTG
TCGCAGACGGCCCCCTCCTCCCCGGCAAGACCTGGCGGGGCACCTTGGAG
GTGGACACCGACATCTGCAAGGATCCGGTGTACTCGGTGGTCGGCATGCT
TGTCAATACAAACGATGCCTTTGTGGGTGTCGACTCGGAGAAGCTTCCGT
ATTACGGTGCCTCGAAGGTGTTCCCCCCAGCCTTCGATGCCGTCAATACA
AACGATGCCTTTGTGGGTGTCGACTCGGAGAAGCTTCCGTATTACGGTGC
CTCGAAGGTGTTCCCCCCAGCCTTCGATGCCGGAACCGAGATGAACAACG
AACTGTGCAGTCACATCCCCGGCCCCGCCTGCACCACTGAAAGTGGCAAC
CAAGAAGCAACACCCGGAGAAGGCTACATCCACGTGCACCGCGGTGTACA
TGGCATTGGCGACATCACGGCGGATGTGTACGACTGGCGTAACCCTGTGG
CGGAGATCTTTATTGAGGCCAGTGGTTGAGAACCGAGATGAACAACGAAC
TGTGCAGTCACATCCCCGGCCCCGCCTGCACCACTGAAAGTGGCAACCAA
GAAGCAACACCCGGAGAAGGCTACATCCACGTGCACCGCGGTGTACATGG
CATTGGCGACATCACGGCGGATGTGTACGACTGGCGTAACCCTGTGGCGG
AGATCTTTATTGAGGCCAGTGGTTGA
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