mRNA_H-paniculata_contig49408.12125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49408.12125.1
Unique NamemRNA_H-paniculata_contig49408.12125.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49408.12125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49408contigH-paniculata_contig49408:756..1089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size336
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930458.8032653-UTR-H-paniculata_contig49408:755..7861622930458.8032653-UTR-H-paniculata_contig49408:755..786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49408 756..786 +
1691481301.1243095-UTR-H-paniculata_contig49408:755..7861691481301.1243095-UTR-H-paniculata_contig49408:755..786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49408 756..786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930458.8152497-CDS-H-paniculata_contig49408:786..10891622930458.8152497-CDS-H-paniculata_contig49408:786..1089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49408 787..1089 +
1691481301.1360924-CDS-H-paniculata_contig49408:786..10891691481301.1360924-CDS-H-paniculata_contig49408:786..1089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49408 787..1089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49408.12125.1prot_H-paniculata_contig49408.12125.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49408 787..1089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49408.12125.1

>prot_H-paniculata_contig49408.12125.1 ID=prot_H-paniculata_contig49408.12125.1|Name=mRNA_H-paniculata_contig49408.12125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MRLSISLCGMLEVRQVQASLACFISVTLKPSARRFSAENVSLPTLTSLGL
VSAAMHPAMLTNSKNNFLHIKKLICTPSNFGTPLLTCVRYRISVANVSLP
L
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mRNA from alignment at H-paniculata_contig49408:756..1089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49408.12125.1 ID=mRNA_H-paniculata_contig49408.12125.1|Name=mRNA_H-paniculata_contig49408.12125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=334bp|location=Sequence derived from alignment at H-paniculata_contig49408:756..1089+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACGCGGCACTCGGGGACTGCAGGTCATAGATGCGACTGAGTATATCTC
TTTGTGGGATGCTCGAAGTGAGGCAAGTCCAGGCGTCCCTAGCTTGCTTT
ATTTCTGTCACGTTAAAACCTTCTGCGCGTAGATTTTCTGCGGAAAACGT
CTCGCTCCCTACTTTGACTTCTCTCGGACTGGTGAGTGCAGCAATGCACC
CTGCAATGTTGACAAACTCCAAAAATAACTTTCTCCATATCAAGAAGTTG
ATCTGTACTCCATCAAACTTCGGTACGCCGCTTTTGACGTGTGTAAGGTA
CCGTATATCTGTCGCAAACGTATCGCTACCTCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig49408:756..1089+

>mRNA_H-paniculata_contig49408.12125.1 ID=mRNA_H-paniculata_contig49408.12125.1|Name=mRNA_H-paniculata_contig49408.12125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig49408:756..1089+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACTGAGTATATCTCTTTGTGGGATGCTCGAAGTGAGGCAAGTCCA
GGCGTCCCTAGCTTGCTTTATTTCTGTCACGTTAAAACCTTCTGCGCGTA
GATTTTCTGCGGAAAACGTCTCGCTCCCTACTTTGACTTCTCTCGGACTG
GTGAGTGCAGCAATGCACCCTGCAATGTTGACAAACTCCAAAAATAACTT
TCTCCATATCAAGAAGTTGATCTGTACTCCATCAAACTTCGGTACGCCGC
TTTTGACGTGTGTAAGGTACCGTATATCTGTCGCAAACGTATCGCTACCT
CTTATGCGACTGAGTATATCTCTTTGTGGGATGCTCGAAGTGAGGCAAGT
CCAGGCGTCCCTAGCTTGCTTTATTTCTGTCACGTTAAAACCTTCTGCGC
GTAGATTTTCTGCGGAAAACGTCTCGCTCCCTACTTTGACTTCTCTCGGA
CTGGTGAGTGCAGCAATGCACCCTGCAATGTTGACAAACTCCAAAAATAA
CTTTCTCCATATCAAGAAGTTGATCTGTACTCCATCAAACTTCGGTACGC
CGCTTTTGACGTGTGTAAGGTACCGTATATCTGTCGCAAACGTATCGCTA
CCTCTT
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