prot_H-paniculata_contig494.12122.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig494.12122.1
Unique Nameprot_H-paniculata_contig494.12122.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length466
Homology
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BLAST of mRNA_H-paniculata_contig494.12122.1 vs. uniprot
Match: A0A6H5K6S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S9_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 3.220e-91
Identity = 222/472 (47.03%), Postives = 275/472 (58.26%), Query Frame = 0 
Query:   31 VGLLVGVS-RSVDALVMPT------TGFIIPLSAGHHARPSVRPTRATGEIKCSATSQGGGEAESADSSEIYSALRNRLQELRTQDDHGSHDG----EGEGASPSLTGQEELERRAAASPRLHYPSVLSYSRQDMKKAYYQAFWRARNL-KKVKGGVDSGVNQGDSSSSASYSNLSPPPRTSSSDMSPPTTLLSTLAMDMIISK--YENQPAEAEDQPVETGAVQGFTQMYYLEEKDEEQLAVSGRRVAAAGV----------------------DVTASVERMWPV----GLSQMFFLEDAHEEAEVAARALPSV-YRSFLRERLGVPGEVVQDLRQVELDHARLAMLAVLLTGVVGAGAGAGVPASAELLDTNLGLAALAQVARTPWLDPCVAGVILAVKALSEGDWRIGKGALAGWADQGLCTISDISAKILRLGSGDEIRKLAVEMEVKHGRMALGAVVCAMAQQGLV 461
            VGLL+G S R+V A V PT      +    P +     R  VRP    G+++ SAT   GG A   DSSE+Y+ +R RL+ELR      S  G    E + + P L  Q+                  +YS Q+MK+ YY+AFWRARNL ++ K    SG  + D SS       +PPP   +      TT+LS +AM+M +S+                   VQG TQMY+LE ++EE +  S    AAA                        DV A  E M P     GL+Q+FFL+   E+  +AA ALP V  RSFLRERLGVPGE+VQDLRQVELDHARLAMLAVLL+GVVGAG          LL+ + G +ALA VARTPWLDP VAG ILA KALSEGDWR+GKGA+AG AD+ L  +S+  AK+LRLGSG+E+R+LAVE+EVKHGRMALGAVVCAMAQQGL+
Sbjct:   22 VGLLLGRSGRAVQAFV-PTHHRGVSSLLTRPFAPARGGRALVRPR--AGDMRLSATGGSGG-AGDIDSSELYADMRRRLEELRQSSSSRSDTGFSPIEDDVSDPGLFQQQNXXXXXXXXX----XXAKAYSAQEMKQRYYEAFWRARNLHREAKFEASSGA-EDDYSSDTPAPPATPPPEAEAGSR---TTILSHMAMNMFLSRGAXXXXXXXXXXXXXXXSDVQGLTQMYHLELEEEEGVLASTAVAAAATAEALPVRQPQHAAVSTEAVFAAPDVAAEAESMIPTAQPQGLTQVFFLDP--EDEALAAAALPVVPERSFLRERLGVPGELVQDLRQVELDHARLAMLAVLLSGVVGAGXX---XXXGVLLNAHDGFSALADVARTPWLDPYVAGGILAAKALSEGDWRVGKGAMAGLADRALNAVSNTGAKVLRLGSGNELRRLAVEVEVKHGRMALGAVVCAMAQQGLL 476
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BLAST of mRNA_H-paniculata_contig494.12122.1 vs. uniprot
Match: D8LGH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH2_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 5.200e-74
Identity = 203/454 (44.71%), Postives = 248/454 (54.63%), Query Frame = 0 
Query:   19 PACRAMTTVSTTVGLLVGVS-RSVDALVMP----TTGFIIPLSAGHHARPSVRPTRATGEIKCSATSQGGGEAESADSSEIYSALRNRLQELRTQDDHGSHDGEGEGASPSLTGQEEL----ERRAAASPRLHYPSVLSYSRQDMKKAYYQAFWRARNL-KKVKGGVDSGVNQGDSSSSASYSNLSPPPRTSSSDMSPPTTLLSTLAMDMIISKYENQPAEAEDQPVE---TGAVQGFTQMYYLEEKD-----------------------EEQLAVSGRRVAAAGVDVTASVERMWPV----GLSQMFFLEDAHEEAEVAARALPSVY-RSFLRERLGVPGEVVQDLRQVELDHARLAMLAVLLTGVVGAGAGAGVPASAELLDTNLGLAALAQVARTPWLDPCVAGVILAVKALSEGDWRIGKGALAGWADQGLCTISDISAKILRLGSGDE 431
            PAC  +       GLL+  S RSV A V       +    P +     R  VRP    G+++ SAT   GG A   DSSE+Y+ +R RL+ELR      S  G     SP      +L    +               +YS Q+MK+ YY+AFWRARNL K+ K    SG+ + D SS       +PPP   +      TT+LS +AMDM +S+     AEA+D       +  VQG TQMYYLE ++                       + Q A  G     A  DV A+ E M P     GL+Q+FFL D  +EA +AA ALP V  RSFLRERLGVPGEVVQDLRQVELDHARLAMLAVLL+G VGA           LL  + G +ALA VARTPWLDP VAG ILA KALSEGDWRIGKGA+AGWAD+ L  +S+  AK+LRLGSG+E
Sbjct:   16 PACLVL-------GLLLSRSGRSVQAFVPAHHRGVSSLTPPSAPARGGRALVRPR--AGDMRLSATGGSGG-AGDIDSSELYADMRRRLEELRQSSSSSSDTG----LSPIEDDVSDLGLFQQXXXXXXXXXXXXXAKAYSAQEMKQRYYEAFWRARNLHKEAKFEGSSGI-EDDYSSDTPAPPATPPPEAEAGSR---TTILSHMAMDMFLSR--GAAAEADDXXXXXXXSSDVQGLTQMYYLELEEXXXXXXXXXXXXXXTAAEPLPVRQPQHAAVGAEAVFAASDVAAAAESMIPTAEPQGLTQVFFL-DPKDEA-LAAAALPVVPGRSFLRERLGVPGEVVQDLRQVELDHARLAMLAVLLSGAVGAXXX---XXXXVLLKAHDGFSALADVARTPWLDPYVAGGILAAKALSEGDWRIGKGAMAGWADRALSAVSNTGAKVLRLGSGNE 444
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig494.12122.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6S9_9PHAE3.220e-9147.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGH2_ECTSI5.200e-7444.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 316..458
e-value: 5.8E-8
score: 33.4
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 312..464
e-value: 3.9E-9
score: 38.5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 25..35
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 44..465
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..43
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 36..43
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 322..461

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig494contigH-paniculata_contig494:25832..31233 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig494.12122.1mRNA_H-paniculata_contig494.12122.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig494 25003..31564 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig494.12122.1 ID=prot_H-paniculata_contig494.12122.1|Name=mRNA_H-paniculata_contig494.12122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=466bp
MASRPPRQSSSLHRGRKRPACRAMTTVSTTVGLLVGVSRSVDALVMPTTG
FIIPLSAGHHARPSVRPTRATGEIKCSATSQGGGEAESADSSEIYSALRN
RLQELRTQDDHGSHDGEGEGASPSLTGQEELERRAAASPRLHYPSVLSYS
RQDMKKAYYQAFWRARNLKKVKGGVDSGVNQGDSSSSASYSNLSPPPRTS
SSDMSPPTTLLSTLAMDMIISKYENQPAEAEDQPVETGAVQGFTQMYYLE
EKDEEQLAVSGRRVAAAGVDVTASVERMWPVGLSQMFFLEDAHEEAEVAA
RALPSVYRSFLRERLGVPGEVVQDLRQVELDHARLAMLAVLLTGVVGAGA
GAGVPASAELLDTNLGLAALAQVARTPWLDPCVAGVILAVKALSEGDWRI
GKGALAGWADQGLCTISDISAKILRLGSGDEIRKLAVEMEVKHGRMALGA
VVCAMAQQGLVAVGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf