prot_H-paniculata_contig4935.12116.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4935.12116.1
Unique Nameprot_H-paniculata_contig4935.12116.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length124
Homology
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BLAST of mRNA_H-paniculata_contig4935.12116.1 vs. uniprot
Match: D8LRU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU9_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.410e-24
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 
Query:   56 LGGDHRQTIEAVSRLALYMGRTGKGVRHIFQDLDTSGDGKLSDTELERALTDLDINISPSQAHALVQFM 124
            LG DHRQTI AVS+LA YM RTGKG+ HIF+DLD+SGDGKLS  ELERAL +LDINI+  QAHALV FM
Sbjct:    2 LGSDHRQTIAAVSQLAAYMSRTGKGINHIFKDLDSSGDGKLSHQELERALVELDINITTVQAHALVTFM 70
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BLAST of mRNA_H-paniculata_contig4935.12116.1 vs. uniprot
Match: A0A6H5L5V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.270e-22
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:   56 LGGDHRQTIEAVSRLALYMGRTGKGVRHIF--------QDLDTSGDGKLSDTELERALTDLDINISPSQAHALVQFM 124
            LG DHRQTI AVSRLA YMGRTGKG+ HIF        Q+LD+SGDG+LS  ELERAL +LDINI+  QAHALV FM
Sbjct:    2 LGSDHRQTIAAVSRLAAYMGRTGKGINHIFKGAASSELQNLDSSGDGRLSHQELERALVELDINITTVQAHALVTFM 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4935.12116.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRU9_ECTSI2.410e-2475.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V3_9PHAE5.270e-2268.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 27..124
e-value: 2.7E-7
score: 32.3
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 89..101
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 76..111
score: 11.305
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 76..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4935contigH-paniculata_contig4935:5684..13166 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4935.12116.1mRNA_H-paniculata_contig4935.12116.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4935 5372..13166 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4935.12116.1 ID=prot_H-paniculata_contig4935.12116.1|Name=mRNA_H-paniculata_contig4935.12116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MSATFTSIRTASSPTSNLMHPSRRKGTLGDQFDENSQAFDLASRRKRPEL
MYDAALGGDHRQTIEAVSRLALYMGRTGKGVRHIFQDLDTSGDGKLSDTE
LERALTDLDINISPSQAHALVQFM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair