mRNA_H-paniculata_contig4934.12115.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4934.12115.1
Unique NamemRNA_H-paniculata_contig4934.12115.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4934.12115.1 vs. uniprot
Match: D7FWC6_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC6_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 5.510e-21
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 RRHQAIKRCGLFSGWDTEDIMRLARMSRVHRYPSKCVMLRQSEEPSHLHILLTGTCTVTK 180
            RR  AIK CGLF GW+ ED+MRL RMSR+HR+PSK V+L Q +EPSHLHI+L+G CTVTK
Sbjct: 1417 RRLDAIKLCGLFGGWEHEDLMRLTRMSRIHRHPSKSVLLMQRKEPSHLHIVLSGACTVTK 1476
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BLAST of mRNA_H-paniculata_contig4934.12115.1 vs. uniprot
Match: A0A6H5K1M1_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1M1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.050e-14
Identity = 42/102 (41.18%), Postives = 50/102 (49.02%), Query Frame = 1 
Query:    1 RRHQAIKRCGLFSGWDTEDIMRLARMSRVHRYPSKCVMLRQ------------------------------------------SEEPSHLHILLTGTCTVTK 180
            RR  AIK CGLF GW+ ED+MRL RMSR+HR+PSK V+L Q                                           +EPSHLHI+L+G CTVTK
Sbjct: 1211 RRLDAIKLCGLFGGWEHEDLMRLTRMSRIHRHPSKSVLLMQRKILSQSPVYRQTLLSLLPLLRLKWMPLYVHAVPPVGPHFDAKKEPSHLHIVLSGACTVTK 1312
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BLAST of mRNA_H-paniculata_contig4934.12115.1 vs. uniprot
Match: A0A7S3XP60_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP60_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 1.740e-6
Identity = 21/60 (35.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 RRHQAIKRCGLFSGWDTEDIMRLARMSRVHRYPSKCVMLRQSEEPSHLHILLTGTCTVTK 180
            +++Q +K  G+F+GW T D++RLA M+++  +P    +++Q+ +P  L  L  G C V K
Sbjct:  141 KKYQDLKHSGVFAGWPTGDLLRLASMAQIKVFPRNTTIVQQAVQPQSLFFLTKGVCRVMK 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4934.12115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWC6_ECTSI5.510e-2170.00Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5K1M1_9PHAE6.050e-1441.18Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3XP60_HETAK1.740e-635.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4934contigH-paniculata_contig4934:11249..12192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size182
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930457.3316333-CDS-H-paniculata_contig4934:11248..112991622930457.3316333-CDS-H-paniculata_contig4934:11248..11299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4934 11249..11299 -
1691481300.4529912-CDS-H-paniculata_contig4934:11248..112991691481300.4529912-CDS-H-paniculata_contig4934:11248..11299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4934 11249..11299 -
1622930457.345895-CDS-H-paniculata_contig4934:12063..121921622930457.345895-CDS-H-paniculata_contig4934:12063..12192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4934 12064..12192 -
1691481300.4611406-CDS-H-paniculata_contig4934:12063..121921691481300.4611406-CDS-H-paniculata_contig4934:12063..12192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4934 12064..12192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4934.12115.1prot_H-paniculata_contig4934.12115.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4934 11249..12192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4934.12115.1

>prot_H-paniculata_contig4934.12115.1 ID=prot_H-paniculata_contig4934.12115.1|Name=mRNA_H-paniculata_contig4934.12115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
RRHQAIKRCGLFSGWDTEDIMRLARMSRVHRYPSKCVMLRQSEEPSHLHI
LLTGTCTVTK
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mRNA from alignment at H-paniculata_contig4934:11249..12192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4934.12115.1 ID=mRNA_H-paniculata_contig4934.12115.1|Name=mRNA_H-paniculata_contig4934.12115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=944bp|location=Sequence derived from alignment at H-paniculata_contig4934:11249..12192- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAGACATCAAGCGATAAAGCGGTGTGGGCTATTTTCAGGCTGGGATAC
GGAAGATATCATGCGGCTGGCCAGGATGTCAAGGGTGCACCGGTACCCAA
GCAAATGCGTGATGCTCAGGCAAAGTGAGGTAAATCAACCTGGTAGTGGA
GCCCGTTGGTGTTCATTATACGGCGGGGCTGTAGCCCGTACGACCGCATG
ATATATATCTGGGATAACATGAAGGTTATACTTGGTTTGCAAAAAGAACA
AACATGCTCTATTATGCAAAAGAACGGGACCGATAAATACGGTAGGTTTG
AACAGCAGTTTGCGATAATATCAGGGACTTTCGACATCAGCGAAGCTTCG
TACTACATATCTAGCGTTACTCCGTTAAATCCCCTTACATGGTATTAAGG
CGGCGTTATAGATACTTCCTCTGTGCCATAAGTAAAGTCGGTTGTGTTTG
GCAGATCATATCTCCAGATCTAAGACTGTTCAGACGCTGTGGTTGGAATC
GTTGGAAAGCTAAAGCCTGATAGACTCATATGCATCATAAGCGTTACGAT
TGTGCGTATGAAAATTACTGGTCGCTCAAGGTTGAGATATTCCGATCATT
TGCCACGTTTTTTTCGATTTTATTCGTTTTTCGATTGAGAGAATACAAGA
AGGGCCATAATATGGCCTTTTCCCCACCGACATTGTTTTTGCGCCGCGCG
CGCTCCCGATAGATTTCGCCGCTTTCCGTGAAATTTTGGGGTTCAATCCC
CCAAACTTGTAGGATAAAAAAAAATCGGAGATTATTACGAGCCTCTATAG
AGACTATTCAACAGACTTTACTTCTGGCACAGAGAAAGTATATATATACT
CCGAGTATACCCTCGCTTCTTGCTCGGTGGTCTACGAATGCAGGAACCTT
CACATCTCCACATATTGCTGACGGGAACATGTACCGTTACCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4934:11249..12192-

>mRNA_H-paniculata_contig4934.12115.1 ID=mRNA_H-paniculata_contig4934.12115.1|Name=mRNA_H-paniculata_contig4934.12115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig4934:11249..12192- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAGACATCAAGCGATAAAGCGGTGTGGGCTATTTTCAGGCTGGGATAC
GGAAGATATCATGCGGCTGGCCAGGATGTCAAGGGTGCACCGGTACCCAA
GCAAATGCGTGATGCTCAGGCAAAGTGAGCGGAGACATCAAGCGATAAAG
CGGTGTGGGCTATTTTCAGGCTGGGATACGGAAGATATCATGCGGCTGGC
CAGGATGTCAAGGGTGCACCGGTACCCAAGCAAATGCGTGATGCTCAGGC
AAAGTGAGGAACCTTCACATCTCCACATATTGCTGACGGGAACATGTACC
GTTACCAAGGAACCTTCACATCTCCACATATTGCTGACGGGAACATGTAC
CGTTACCAAG
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