mRNA_H-paniculata_contig49286.12105.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49286.12105.1
Unique NamemRNA_H-paniculata_contig49286.12105.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: D7G222_ECTSI (Glycosyltransferase, family GT34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G222_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.240e-17
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1
Query:    4 SVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYLM 150
            S+ NK+ YAALHGY+VIVATS D+DRSRPAAWSK+LVL KHL  YDY++
Sbjct:  187 SIANKKAYAALHGYDVIVATSADIDRSRPAAWSKLLVLSKHLGSYDYVI 235          
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: A0A6H5L917_9PHAE (GT34 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L917_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.860e-17
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1
Query:    4 SVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYLM 150
            S+ NK+ YAALHGY+VIVATS D+DRSRPAAWSK+LVL KHL  YDY++
Sbjct:  359 SIANKKAYAALHGYDVIVATSADIDRSRPAAWSKLLVLSKHLGSYDYVI 407          
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: A0A2R5GV14_9STRA (Xyloglucan 6-xylosyltransferase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GV14_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.070e-12
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    4 SVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYLM 150
            S+KNK++YA  H YEVIVA  D++D+SRPAAWSK  +LEK+L +YDYLM
Sbjct:  175 SIKNKQDYANRHSYEVIVA-DDEIDKSRPAAWSKFPILEKYLPEYDYLM 222          
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: A0A7S2WUX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUX7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.300e-12
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    4 SVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYLM 150
            S++NKR+YA  HGY+++VA   D+DRSRPAAWSK   + KHL  YDYL+
Sbjct:   95 SLENKRQYAQRHGYDLVVARGKDIDRSRPAAWSKFKAMRKHLPRYDYLL 143          
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: A0A2R5FF46_9STRA (Xyloglucan 6-xylosyltransferase 1 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FF46_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.600e-10
Identity = 24/49 (48.98%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    4 SVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYLM 150
            S+ NK+ YA+ HGY++++  ++ +D SRPA WSK+ +L+KHL DYDY++
Sbjct:   45 SLSNKKAYASHHGYDLLIGDAE-IDPSRPAPWSKLTILQKHLPDYDYMV 92          
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: A0A2R5G171_9STRA (Galactomannan galactosyltransferase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G171_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.090e-9
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    4 SVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYLM 150
            S++NK+EYA  HGY++IVA  D VDRSR   WSK+L +E+HL +YDY++
Sbjct:  201 SLQNKQEYAKRHGYDLIVA-DDVVDRSRALEWSKLLAVERHLPNYDYVL 248          
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: A0A2R5GIM3_9STRA (Asparagine--tRNA ligase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIM3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.520e-9
Identity = 26/50 (52.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 MSVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYLM 150
            +S++NKREYA  HGY++I A +D++D SRP AWSK+ +L K+L  YD+++
Sbjct:   92 LSIRNKREYAEHHGYDLIEA-NDEIDLSRPPAWSKLTLLSKYLPSYDFMV 140          
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: C1MP96_MICPC (Uncharacterized protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MP96_MICPC)

HSP 1 Score: 58.9 bits (141), Expect = 9.830e-9
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    4 SVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYLM 150
            S  NKR YAA HGY++IV T +  D SRPAAWSKIL + KHL  Y++++
Sbjct:  228 SAANKRRYAAKHGYDLIVVT-EVADASRPAAWSKILEVRKHLPKYEWVL 275          
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: A0A7S1TXZ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXZ2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.890e-8
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    4 SVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYL 147
            S++N+R YAA  GY+VI+ T   V+R RPAAWSK+L L +HL D+D++
Sbjct:   11 SLENRRRYAARWGYDVILETRA-VERRRPAAWSKLLGLRRHLQDFDWI 57          
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Match: A0A0A9FRJ1_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9FRJ1_ARUDO)

HSP 1 Score: 54.3 bits (129), Expect = 1.690e-7
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    4 SVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHL 129
            SV+NKR YAA HGY +IV  +D VD  RP +WSKIL L+ +L
Sbjct:   95 SVRNKRAYAAAHGYGLIVLPADAVDTRRPLSWSKILALQANL 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49286.12105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G222_ECTSI9.240e-1773.47Glycosyltransferase, family GT34 n=1 Tax=Ectocarpu... [more]
A0A6H5L917_9PHAE9.860e-1773.47GT34 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A2R5GV14_9STRA1.070e-1265.31Xyloglucan 6-xylosyltransferase 1 n=1 Tax=Hondaea ... [more]
A0A7S2WUX7_9STRA1.300e-1259.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R5FF46_9STRA5.600e-1048.98Xyloglucan 6-xylosyltransferase 1 (Fragment) n=1 T... [more]
A0A2R5G171_9STRA1.090e-957.14Galactomannan galactosyltransferase 1 n=1 Tax=Hond... [more]
A0A2R5GIM3_9STRA1.520e-952.00Asparagine--tRNA ligase n=1 Tax=Hondaea fermentalg... [more]
C1MP96_MICPC9.830e-957.14Uncharacterized protein n=2 Tax=Micromonas pusilla... [more]
A0A7S1TXZ2_9STRA8.890e-854.17Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0A9FRJ1_ARUDO1.690e-759.52Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49286contigH-paniculata_contig49286:984..1151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue9.5e-14
Seed eggNOG ortholog2880.D7G222
KEGG koko:K05531
KEGG Pathwayko00513,ko01100,map00513,map01100
KEGG ModuleM00074
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.xyloglucan 6-xylosyltransferase activity
EggNOG OGsKOG4748@1,KOG4748@2759
COG Functional cat.S
CAZyGT34
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size168
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930455.561363-CDS-H-paniculata_contig49286:983..11511622930455.561363-CDS-H-paniculata_contig49286:983..1151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49286 984..1151 -
1691481299.5149107-CDS-H-paniculata_contig49286:983..11511691481299.5149107-CDS-H-paniculata_contig49286:983..1151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49286 984..1151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49286.12105.1prot_H-paniculata_contig49286.12105.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49286 984..1151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49286.12105.1

>prot_H-paniculata_contig49286.12105.1 ID=prot_H-paniculata_contig49286.12105.1|Name=mRNA_H-paniculata_contig49286.12105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MSVKNKREYAALHGYEVIVATSDDVDRSRPAAWSKILVLEKHLSDYDYLM
CDYMY*
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mRNA from alignment at H-paniculata_contig49286:984..1151-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49286.12105.1 ID=mRNA_H-paniculata_contig49286.12105.1|Name=mRNA_H-paniculata_contig49286.12105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig49286:984..1151- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGTGAAGAACAAGAGAGAGTACGCGGCGCTGCACGGGTATGAAGT GATCGTGGCGACCAGTGATGATGTGGACAGAAGCCGACCCGCAGCGTGGA GCAAGATCCTCGTGCTGGAGAAGCACCTGAGCGACTATGACTACCTCATG TGCGACTATATGTATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig49286:984..1151-

>mRNA_H-paniculata_contig49286.12105.1 ID=mRNA_H-paniculata_contig49286.12105.1|Name=mRNA_H-paniculata_contig49286.12105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig49286:984..1151- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGTGAAGAACAAGAGAGAGTACGCGGCGCTGCACGGGTATGAAGT
GATCGTGGCGACCAGTGATGATGTGGACAGAAGCCGACCCGCAGCGTGGA
GCAAGATCCTCGTGCTGGAGAAGCACCTGAGCGACTATGACTACCTCATG
TGCGACTATATGTATTAGATGTCGGTGAAGAACAAGAGAGAGTACGCGGC
GCTGCACGGGTATGAAGTGATCGTGGCGACCAGTGATGATGTGGACAGAA
GCCGACCCGCAGCGTGGAGCAAGATCCTCGTGCTGGAGAAGCACCTGAGC
GACTATGACTACCTCATGTGCGACTATATGTATTAG
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