mRNA_H-paniculata_contig49274.12104.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 231 bits (588), Expect = 3.450e-66 Identity = 124/254 (48.82%), Postives = 167/254 (65.75%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDK----------PVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
I + +A+YGLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG C+ L A+L +F T GE +W+ GCA RD+ G +S P R A+GS++W+S +RPD++ AVRAVAR AH P RHW A+ KI+ YLK T+DLG+ ++RG L L+VYVDA YAD + RRSV+G+A +GG+VVS S TQ V+LS++EAEY+A +G K ALF RAVL
Sbjct: 678 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVL 929
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 213 bits (542), Expect = 1.130e-59 Identity = 123/282 (43.62%), Postives = 164/282 (58.16%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
++++ +A+YGLKQ+GR W +LV++ G Q ++DPCVFR +G V I+ ++VDD++ G + + L +LR GE WY GCA RD+ G LS DKPVR A+G L+W + TRPDIA+A+ AV R AH PT R WKA+V+I+SYL T DLG+ + RG L+L VYVDA YAD+ RRSV+G+AV +GG+VVS S TQ V+LSTSEAEY+A +G K ALF RAVL
Sbjct: 877 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1157
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 213 bits (542), Expect = 1.230e-59 Identity = 123/282 (43.62%), Postives = 164/282 (58.16%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
++++ +A+YGLKQ+GR W +LV++ G Q ++DPCVFR +G V I+ ++VDD++ G + + L +LR GE WY GCA RD+ G LS DKPVR A+G L+W + TRPDIA+A+ AV R AH PT R WKA+V+I+SYL T DLG+ + RG L+L VYVDA YAD+ RRSV+G+AV +GG+VVS S TQ V+LSTSEAEY+A +G K ALF RAVL
Sbjct: 1430 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1710
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 195 bits (496), Expect = 1.400e-56 Identity = 120/283 (42.40%), Postives = 155/283 (54.77%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAV 726
IV+LNK++YGLKQA R W L L+ +G Q +D CVFRL + G V + L VHVDD+ G+ +CD L G+L+WY GC + RD G DE++ P R +GSL+WL+ TRPDIA+AVRAVAR +P + HW+A + I+ Y+ RT DLG+ F RG L++ V+VDADYA K+ RRSVSG VM GG +S S TQ CVTLST+EAEYV++A K LF R V
Sbjct: 68 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 349
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 195 bits (496), Expect = 4.260e-55 Identity = 120/283 (42.40%), Postives = 155/283 (54.77%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAV 726
IV+LNK++YGLKQA R W L L+ +G Q +D CVFRL + G V + L VHVDD+ G+ +CD L G+L+WY GC + RD G DE++ P R +GSL+WL+ TRPDIA+AVRAVAR +P + HW+A + I+ Y+ RT DLG+ F RG L++ V+VDADYA K+ RRSVSG VM GG +S S TQ CVTLST+EAEYV++A K LF R V
Sbjct: 242 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 523
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5JZ67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ67_9PHAE) HSP 1 Score: 194 bits (494), Expect = 5.410e-55 Identity = 113/244 (46.31%), Postives = 157/244 (64.34%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
IV+ +A+ GLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ V++DD++VAG C L A+L +F T GE + + GCA RD+ E + K ++A+ W+S +RPD++ AVRAV R AH RHW A+ K++SYLK T+DLG+ ++R L ++VYV+A Y D + RSVSG+A +GG+VVS S TQ V+LS++EAEY+A +G K ALF RAVL
Sbjct: 265 IVKAERAIRGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVVYLDDILVAGSDEDCKGLLASLNKKFPTKNLGECERFDGCAIERDV----ESTTLKISQTAI---TWVSTCSRPDVSFAVRAVERHAHALAKRHWDAIRKVLSYLKETRDLGITYQRRSGLGMAVYVNASYVDTED-NRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAGGEGVKEALFVRAVL 499
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE) HSP 1 Score: 192 bits (488), Expect = 6.420e-55 Identity = 107/236 (45.34%), Postives = 149/236 (63.14%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAA 708
I + +A+YGLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG C+ + + + G R DE+ + PVR A+GS++W+S +RPD++ AVRAVAR AH P R+W A+ KI+ YLK T+DLG+ ++RG L L+VYVDA YAD + RRSVSG+A +GG+V+S S TQ V+LS++EAEY+A G K A
Sbjct: 178 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEECQCMVERFDVKSTSRIPATPGADLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVLSHGSKTQSIVSLSSTEAEYIAAEDGVKEA 409
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE) HSP 1 Score: 188 bits (477), Expect = 1.160e-54 Identity = 111/245 (45.31%), Postives = 153/245 (62.45%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
IV+ +A+YGLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG R + Q+T ++ D+ R +E + PVR A+GS++W+S +RPD++ AV AV R AH P RHW A+ KI+ YL T+ LG+ ++RG L L+VYVDA YAD + RRSVSG+A +GG+VVS S Q V+L ++EAEY+A +G K ALF RAVL
Sbjct: 45 IVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGM---------VRRFDVQSTS-----HIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKMQTIVSLYSTEAEYIAAGEGVKEALFVRAVL 273
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE) HSP 1 Score: 185 bits (469), Expect = 3.320e-54 Identity = 111/279 (39.78%), Postives = 154/279 (55.20%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTR 720
+V++ +A+Y LKQ+GR W + L+ N G Q + DPCVFR +G V ++ ++VDD++VA + + LFA+L EF GE WY GCA D+ G DE DKPVR A+G L+W +TRPDIA + + + AH+PT R W A+V+I+SYL TKD G+ + RG L+ SV+VDA YAD RRS +G+AV +GG+VV A++ TQ STSEAE++A +G K ALF R
Sbjct: 5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDRSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPLTAQSTSEAEHMAAGEGVKEALFVR 281
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE) HSP 1 Score: 187 bits (475), Expect = 3.870e-54 Identity = 113/282 (40.07%), Postives = 156/282 (55.32%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
+V++ +A+Y LKQ+GR W + L+ N G Q + DPCVFR +G V ++ ++VDD++VA + + LFA+L +F GE WY GCA D+ G DE DKPVR A+G L+W +TRPDIA + + + A +PT R W A+V+I+SYL TKD G+ + RG L+LSV+VDA YAD RRS +G+AV +GG+VV A++ TQ STSEAEY+A +G K ALF R VL
Sbjct: 5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAQSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVL 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49274.12104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig49274.12104.1 >prot_H-paniculata_contig49274.12104.1 ID=prot_H-paniculata_contig49274.12104.1|Name=mRNA_H-paniculata_contig49274.12104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHback to top mRNA from alignment at H-paniculata_contig49274:525..1367- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig49274.12104.1 ID=mRNA_H-paniculata_contig49274.12104.1|Name=mRNA_H-paniculata_contig49274.12104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=843bp|location=Sequence derived from alignment at H-paniculata_contig49274:525..1367- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig49274:525..1367- >mRNA_H-paniculata_contig49274.12104.1 ID=mRNA_H-paniculata_contig49274.12104.1|Name=mRNA_H-paniculata_contig49274.12104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig49274:525..1367- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |