mRNA_H-paniculata_contig4925.12102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4925.12102.1 vs. uniprot
Match: A0A6H5JG15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG15_9PHAE) HSP 1 Score: 292 bits (747), Expect = 2.220e-78 Identity = 227/501 (45.31%), Postives = 267/501 (53.29%), Query Frame = 1
Query: 22 GSGGTS---SVPRSERLCKVLPKVMDTAIKGVRDLDEQVFEQMMQXXXXXXXXXXXXXXXXXXXXXXXXX------------VVARDGGGEFFAQSPAPGRPASFFRL-GEPQTP--------RRTSVVATGSTGFVR-GSPPESTRDRRMNARAKQTPPAPLVTAIPATGP------STIKNPGTPGRGRGIGGAAAGAVMGVGEWWANTFTPTGNRYVIV-AERIFRGILDLSIVRMVVPRKRTNSDQGAASTTPAAPAQAAE---RQDILSFEGSAEEVLRYTIVAKSYLIRSRSRRHGEGTP-SPSKLIKSPGGIDTVVSEGDDNDMRAATKELLDLKTRYMTATQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHREAAAVLRAERVASEAQQATALKSRPNNNSADDGDMSGGGVAASPNTSTPDNAQCMSHDATTMAV----------------RDEDATRTISMLGGTADLLKFSRLLLLLSEAIAVSASV 1368
G G TS S+P SERLCKVLPKVM+TAI+GV+DLDEQVFEQMM+ VVARDGGGEFFAQSPAPGRPASFFRL GEP+TP RRTS ++GS VR SP ++T +++ KQ A A P + +K P + G AG G G+W A FTP G + R + D+G A PA P + D LSFEGS EEVLRYTIVAKSYLIRS+S++HGE SP K + SPGG + V EG + D+R T+ELLDLK+RYM +TQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELH EAAAVLRAE V E+ + + +S GD +E+A RTI+ML GTA+ LKFSRLLLLLSEAI+VS SV
Sbjct: 628 GEGITSRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERSSGMSMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLMGEPKTPARGDGSALRRTSSGSSGSIKVVRTASPWDATPMKKILTGGKQ---GKKAAAAAAATPHRNARETPLKTPRSGG---------AGGFFGAGDWLAAAFTPRGALAPDPESPRAPASEVPKQXXXXXXXXXXVEKDEGIAPLAPAQPISSFRPPPEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESREASPIKSLFSPGGTERRVEEGGEEDVRHLTQELLDLKSRYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAESVLEESLRLQHSGGSNSKSSRGCGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEEANRTIAMLEGTAEFLKFSRLLLLLSEAISVSNSV 1116
BLAST of mRNA_H-paniculata_contig4925.12102.1 vs. uniprot
Match: D7G4K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K0_ECTSI) HSP 1 Score: 232 bits (591), Expect = 2.490e-59 Identity = 202/484 (41.74%), Postives = 240/484 (49.59%), Query Frame = 1
Query: 40 SVPRSERLCKVLPKVMDTAIKGVRDLDEQVFEQMMQXXXXXXXXXXXXXXXXXXXXXXXXX------------VVARDGGGEFFAQSPAPGRPASFFRL-GEPQTPRR---TSVVATGSTGFVR----GSPPESTRDRRMNARAKQTPPAPLVTAIPATGPSTIKNPGTPGRGRGIGGAAAGAVMGVGEWWANTFTPTGNRYVIVAERIFRGILDLSIVRMVVPRKRTNSDQGAASTTPAAPAQAAERQDILSFEGSAEEVLRYTIVAKSYLIRSRSRRHGEGTP-SPSKLIKSPGGIDTVVSEGDDNDMRAATKELLDLKTRYMTATQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHREAAAVLRAERVASEAQQATALKSRPNNNSADD------------------GDMSGGGVAASPNTSTPDNAQCMSHDATTMAV--RDEDATRTISMLGGTADLLKFSRLLLLLSEAIAVSASV 1368
S+P SERLCKVLPKVM+TAI+GV+DLDEQVFEQMM+ VVARDGGGEFFAQSPAPGRPASFFRL GEP+TP R +++ T S ++ S ++T +M K A P TP R GGA G G G+W A FTP RG L R P +R TP+ P SYLIRS+S++HGE SP K + SPGG + V EG + D+R TKELLDLK+RYM +TQHWLKTDIVN EELRMIRAQVFEAIQRKRSELH EAAAVLRAE S +++ ++ +NS +TS D +E+A RTI+ML GTA+ LKFSRLLLLLSEAI+VS SV
Sbjct: 427 SIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERGSGMAMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLVGEPKTPARGDGSALRRTSSGSSIKVVRTASAWDATPMIKMFTGGKPGKKAXXXXXXXXATPHKNARE-TPLRTPRSGGA--GGFFGAGDWLAAAFTP-------------RGALAPDPDR--APPRRFFG-------TPSLP---------------------------SYLIRSKSKKHGESREASPIKSLFSPGGTERKVEEGGEEDVRHLTKELLDLKSRYMASTQHWLKTDIVNHEELRMIRAQVFEAIQRKRSELHTEAAAVLRAE---SRLEESLRIQHSGGSNSKSSRGCXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSGKDEXXXXXXXXXXXXXLREEEEANRTIAMLAGTAEFLKFSRLLLLLSEAISVSNSV 855 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4925.12102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4925.12102.1 >prot_H-paniculata_contig4925.12102.1 ID=prot_H-paniculata_contig4925.12102.1|Name=mRNA_H-paniculata_contig4925.12102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=588bp MRRDSGSGGTSSVPRSERLCKVLPKVMDTAIKGVRDLDEQVFEQMMQAAAback to top mRNA from alignment at H-paniculata_contig4925:4302..14485- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4925.12102.1 ID=mRNA_H-paniculata_contig4925.12102.1|Name=mRNA_H-paniculata_contig4925.12102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10184bp|location=Sequence derived from alignment at H-paniculata_contig4925:4302..14485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4925:4302..14485- >mRNA_H-paniculata_contig4925.12102.1 ID=mRNA_H-paniculata_contig4925.12102.1|Name=mRNA_H-paniculata_contig4925.12102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3528bp|location=Sequence derived from alignment at H-paniculata_contig4925:4302..14485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |