mRNA_H-paniculata_contig11896.1210.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11896.1210.1
Unique NamemRNA_H-paniculata_contig11896.1210.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11896.1210.1 vs. uniprot
Match: D7G7H1_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H1_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 4.020e-23
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 3 
Query:  489 QEEVLRMVDFLFNADRPLVDSCVQVLDKSRVVNVRARDTGRDIWLVQGSRGAPYLCLRHYCSCR 680
            Q E+L+++DFLF +D PLV+S +QVLDKSRVV V AR+TGR +WLVQGSRGAPYLCLR YCSCR
Sbjct:  142 QAEILKVLDFLFCSDCPLVESTIQVLDKSRVVKVVARNTGRSVWLVQGSRGAPYLCLREYCSCR 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11896.1210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7H1_ECTSI4.020e-2373.44SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11896contigH-paniculata_contig11896:1912..6339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size680
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.6626897-UTR-H-paniculata_contig11896:1911..19391622928900.6626897-UTR-H-paniculata_contig11896:1911..1939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11896 1912..1939 +
1691480661.6911993-UTR-H-paniculata_contig11896:1911..19391691480661.6911993-UTR-H-paniculata_contig11896:1911..1939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11896 1912..1939 +
1622928900.773382-UTR-H-paniculata_contig11896:5322..53561622928900.773382-UTR-H-paniculata_contig11896:5322..5356Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11896 5323..5356 +
1691480661.7376275-UTR-H-paniculata_contig11896:5322..53561691480661.7376275-UTR-H-paniculata_contig11896:5322..5356Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11896 5323..5356 +
1622928900.789566-UTR-H-paniculata_contig11896:6219..63391622928900.789566-UTR-H-paniculata_contig11896:6219..6339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11896 6220..6339 +
1691480661.747995-UTR-H-paniculata_contig11896:6219..63391691480661.747995-UTR-H-paniculata_contig11896:6219..6339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11896 6220..6339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.6804113-CDS-H-paniculata_contig11896:1939..20321622928900.6804113-CDS-H-paniculata_contig11896:1939..2032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11896 1940..2032 +
1691480661.703029-CDS-H-paniculata_contig11896:1939..20321691480661.703029-CDS-H-paniculata_contig11896:1939..2032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11896 1940..2032 +
1622928900.702184-CDS-H-paniculata_contig11896:3675..38181622928900.702184-CDS-H-paniculata_contig11896:3675..3818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11896 3676..3818 +
1691480661.7129414-CDS-H-paniculata_contig11896:3675..38181691480661.7129414-CDS-H-paniculata_contig11896:3675..3818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11896 3676..3818 +
1622928900.7360406-CDS-H-paniculata_contig11896:4287..44661622928900.7360406-CDS-H-paniculata_contig11896:4287..4466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11896 4288..4466 +
1691480661.7226908-CDS-H-paniculata_contig11896:4287..44661691480661.7226908-CDS-H-paniculata_contig11896:4287..4466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11896 4288..4466 +
1622928900.7585125-CDS-H-paniculata_contig11896:5239..53221622928900.7585125-CDS-H-paniculata_contig11896:5239..5322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11896 5240..5322 +
1691480661.7303798-CDS-H-paniculata_contig11896:5239..53221691480661.7303798-CDS-H-paniculata_contig11896:5239..5322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11896 5240..5322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11896.1210.1prot_H-paniculata_contig11896.1210.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11896 1940..5322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11896.1210.1

>prot_H-paniculata_contig11896.1210.1 ID=prot_H-paniculata_contig11896.1210.1|Name=mRNA_H-paniculata_contig11896.1210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MSIDGMEEMVDGGHEAADIVDRVALLDEFLQDVAERSITRQTTAPWGTST
PTPRRTLAQPNTTTPPTGHSNNGSNNNIRDHDDLRGLNINMNSELGRAGH
GGHGPGGDLSTGEGDIHIRAVTTGIGSPEGAVNDIRDAVCYCMSLSRCTG
AGDAGGSASNGRLSL*
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mRNA from alignment at H-paniculata_contig11896:1912..6339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11896.1210.1 ID=mRNA_H-paniculata_contig11896.1210.1|Name=mRNA_H-paniculata_contig11896.1210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4428bp|location=Sequence derived from alignment at H-paniculata_contig11896:1912..6339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGGGTTTGGTGCGTGGCTGTGTGATAATGTCGATTGATGGAATGGAGG
AGATGGTAGATGGAGGACATGAGGCTGCTGATATCGTGGACAGAGTGGCT
CTTCTAGACGAGTTTTTGCAGGTGGTGCTCTACTGTACCCTGTCTGTAGT
TGCTTATGTTCAATCATGACCTTATCCTACCTATAGAAAGTCTACTGGAG
TATACAGTAGTACGGATGCTATACAAGTTCGATGGAGGCAGTTTGAATTC
GGGCGTCCTGTGTGTCTTGACTACAGTCACCATGCCTACGATCACAATCA
CACGTAGTGCTGTAGTATACTTTACTGTTCGGCTATAGCTGCTTTAGAAG
GCCTGTATGCCTGGGATGTTTACTTGAGATCTTGTGCGTTATGATGACCT
TTGCCCTCTAGCACAGCTGTACTGTAGTAATCGTAGATATAACGATATCC
TTGAATATTTGAATGGTATGATTGCAGACGATAGATAACACGACTGGTAC
ACAGTACAGTACAGTACAGTACAGTATTTAGTATAAACTCGCAGATGTAG
AAGAAACCAACCAAAAAGATACAGATGTGAGACTCGTTTTTTTTAAGATG
TTCACATTGAGAAAGGTTGTGTTCAATTGTGTCTCCCGCTACTAAGACAT
GAACAGAAAAACAATTCCTACAAGATATCGGCCAATCAAGAGAAAGAAAC
ACTGTTGATGTTGGAATGAGAAAGGGCAATGGTTTCAAAAAGAAATTGAA
TCAATCTTCTTCCTCCTCCTCCTCCTCATCCCCGTTTCCCTGTGACTATA
TCTCGTAGAAAAGCCTCTTGTTCACTACAACTAACTTTTGCTCCGTGCGT
CAATAAACCACACGTCTGAGGGATTGGGCTGAAATGAGTATCTATGTTTG
CATACACGCACACCTGAGGATCGACAATCGATAGCACAGCGCGGCAGTAA
AGGAACGTCAAACAGGCCACAGTTTTTCTCCCCCTGTAATCTGATACTTG
GCGCTGTCGGAGAGATCGGTTTGATCAATCGACGAGTTGGGGGGGGTTGA
TGTTGATGTAGAACACGCATAAAACATTGTTTATTAACTTAGGTAGCACG
GAGGGTCGTTCGAAATAAAAAACGAAATACGTGTCGGAGGCTGTTCATTT
TTGTTTGTTTGTTCGTCGTCCCGGATCATTTGTCATGTCGGAACCTGAAG
CTCCCGGTCCGAAGCTGATTTACTCCTCCCCAAAGATTTCAAAATTGGAA
CGTGACCGCTGTCAAAATATAAACGAGACAACATCCAAAAGGACAAGGAA
TTTCGGATTCATCGACCTTTTTTGCGTATTTTGCGAGTGCTTTACCGGAT
AGCAATTCTTGGGTTAGATCGTCCTGTGCTTCGCTGAAGTGTCAGCAGGA
GAGTAGTGTCGAAGAATCGTCTGTGTTGAGGGTTTTTGAATGAAGTATAT
AATGTTTGATCTATTTGATGGACTTTCGGCGGATTTTCTTTAGTGTGTAG
GAGCTTGTATTCCTTGCCAACAGCCTCGTCCGTTCCGTTCTGCATATTGT
CTGTCGGAAGGCAAAAATACTAATAGGGGGGAGGTTGTTGGAAAGGAAAC
AGCAGTAGGTATACCCTCCGGCAGGTAGCAAGCAAGAGATTCTCGTGTTT
GAGTTACTTACACCACTGACGTAGGTTCAGCCGTGGCCTGCCGACTGTTA
ATAGTTTGCCGGTGTTGTCTTTATCTAAACAAGAACCGCTCCGTTGTGGT
TGTCGTTTCCCAAGGATGTTGCCGAGCGGTCGATTACACGGCAGACCACA
GCACCTTGGGGTACATCAACACCAACGCCAAGACGCACGCTCGCACAGCC
AAACACCACCACTCCTCCTACCGGACACAGCAACAACGGCAGCAACAACA
ACATCAGGTCGGCGCAGCAATACCGGTAAATTCAAAGTCATGTGACAAGG
CGGGAAATTACGCATTGTAATAACGTTTTGGGGGATTTGAATGATCGACT
TGCGTTTTCAGTACGACACGAAATTGATACCATTGTTTTTTCTCGAGAGT
CTCTCCCATAAGTCCGATCTATGATGTGTAATGTCTGACAGGTGAAAGTT
GGGACGATAGGCAATGAATGACATGCTCAATTGACACGGCGGGGAGCCGC
AATTATGCCACGGGCCAGAGGCTATGTGTGACGGCTGTGAACAGTCGACA
TAGAGATGCAATGTGTTAACCACGCTCTCAAGAGACATCTGCTGGCTGTA
TAGCTCGACTTGTTGCGCTACGAGTACTGATTGCTGTCATGTTAGTAATG
GTGTGAACTGCAGTCAGTAATGGCCTCCATTTGTGCTAACAGTCACAGTT
ACACCCCCAAAATGACGTACGGTCAGGGACCACGATGACTTGCGAGGGCT
TAATATCAACATGAATAGTGAGCTTGGACGTGCTGGACATGGTGGGCATG
GTCCTGGGGGAGATTTGTCTACTGGAGAAGGGGATATTCATATTCGAGCG
GTGACCACTGGCATTGGCTCGCCTGAAGGAGCAGTCAATGATATCCGAGA
TGCAGGTACGGTTACCGGTAGGAGAGAGGGGTGGAACACATAATGAAGCT
TTCGGCAATCGAGGAGGGCATGTCTCGTGAAAACCCACGCCGTAATCTCT
CGACCATTGGCCTAGCATCCCTACAATGTCGGGACAGAGGATGCACGGGT
TTCGCCGACAACGCTGTGTTCCACAAGGATGATGTGATAATAGCCACTAT
TTAGTCATCGTCCTCGCGTTGCTACGCCAACCGGATTCTGCTGTCGGATT
TCGAGCATCTCGAGTAACACAATTGGCAGGCTTCAGTTATTATTATACCC
TCAGTATCTACCGCACGGTTCGGACTTGGGTGTTCTCGCGCACATGTACT
GTAATACAAATAACAACGTCGCGCTATACACAGCGAATGCATTGCTTCGT
GTGTGATACACTTGGAGTATAACCTGCTCATGTAGTGGTTCTTCCCGGTA
TGGCGGGTGGTTATGTCAGGTAAATAGTGAGGTCGGTGCCACCTATCCAG
AAGAAGATGATGATGATGATGATGATGATGATGATGACGAAAGCAACATA
ATATTATAAAGATTTTAGTTTGTTTTTTTTCTCAGAAATTTGCCATGAAA
AATGCAGCTCAAATTTTGGTCCCATACTAAAGTCGACATACTAAATATTA
ACATAGGAAAAGTTCTTGTTTCAGGTGAGAGACTATAACAATATCGAAGG
TTTGAGGCCAATGTAGTTATCAATGATCAATATCAACGTTTTACATTTTA
GCCGACACAGTGAAAACCTGGACCGCAGTCTGTTACTGTATGTCATTATC
CAGATGCACAGGTGCAGGAGATGCAGGAGGAAGTGCTTCGAATGGTCGAC
TTTCTCTTTAATGCAGACAGGCCCCTCGTCGACAGCTGCGTACAGGTAAA
GCACTGACAATACACGCAAGCATGAAAATATTAGTAGGTATATATACAAT
TTTTCTGTTTTTTTCGTCGGACGTATGATACACGGATAGCCTTCAGCACC
GAGGGAGGATGGACAAGTGGTGTTGGAATGTTGGATGTTGCAATGAATGT
TGCACCCTCCGGACGAATACTTGGAATGGTTGAGACAAATGGTTGAAAAC
CCCCCGTCTAATTTCAGTATGTGCGGGATAAGGATAGATGGTGGATGATG
GCACACGGTAAAACAAAGTATTCACCGCTGTTTATCCGTCTTAATATTTA
ATACTTCGAATTTTTCGCCCCAGTCGTACTGAACCGCTGAAACTATTCGA
AGTAGTCCGGGGGGTGTGGAGTATGATCGACCACAGAGTACACCTAGTAG
GACCGAAGCCCTATACCAACCGGGGACTTGCAGTCCCGCAGTCGTTGCCT
CGGGGACTTGTACGTCCCTCTTGCACTGGCCTGTGGTATATTACCCAGTA
TGTGTAACTACAGTGAAATCCTTCATTACTATATTCTCGAGAAGTACGAC
CCCGCAATCATCAAAAAGCATATCTAATGACAGATCTCCACGAGATTTCT
CCAATGACACAACTTTCGGTGTCACTATTAGTACGGCAGTTTTTCGAGGA
AATCTGCGGTGGTGCCCTTCCCCGAGGGCTTCGGTACTTTAAGTCACACC
CTTACTGGCAGTAAAGTTGGTTAATTAATTCATACTTCGACTGAACAAGG
TAACGGAGTACTACAACATGCCCGCATACATAATACATACATGATAGTGT
CATCAACCGATACATTCTATCGAACCAACTGTCGACATACACACACACAC
ACACACAGGTCCTGGATAAATCTCGGGTAGTGAACGTTCGAGCGAGAGAC
ACCGGGCGAGACATTTGGCTGGTTCAAGGCAGCAGGGGCGCTCCGTATCT
TTGTCTGCGACACTACTGTTCTTGCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11896:1912..6339+

>mRNA_H-paniculata_contig11896.1210.1 ID=mRNA_H-paniculata_contig11896.1210.1|Name=mRNA_H-paniculata_contig11896.1210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig11896:1912..6339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATTGATGGAATGGAGGAGATGGTAGATGGAGGACATGAGGCTGC
TGATATCGTGGACAGAGTGGCTCTTCTAGACGAGTTTTTGCAGATGTCGA
TTGATGGAATGGAGGAGATGGTAGATGGAGGACATGAGGCTGCTGATATC
GTGGACAGAGTGGCTCTTCTAGACGAGTTTTTGCAGGATGTTGCCGAGCG
GTCGATTACACGGCAGACCACAGCACCTTGGGGTACATCAACACCAACGC
CAAGACGCACGCTCGCACAGCCAAACACCACCACTCCTCCTACCGGACAC
AGCAACAACGGCAGCAACAACAACATCAGGATGTTGCCGAGCGGTCGATT
ACACGGCAGACCACAGCACCTTGGGGTACATCAACACCAACGCCAAGACG
CACGCTCGCACAGCCAAACACCACCACTCCTCCTACCGGACACAGCAACA
ACGGCAGCAACAACAACATCAGGGACCACGATGACTTGCGAGGGCTTAAT
ATCAACATGAATAGTGAGCTTGGACGTGCTGGACATGGTGGGCATGGTCC
TGGGGGAGATTTGTCTACTGGAGAAGGGGATATTCATATTCGAGCGGTGA
CCACTGGCATTGGCTCGCCTGAAGGAGCAGTCAATGATATCCGAGATGCA
GGGACCACGATGACTTGCGAGGGCTTAATATCAACATGAATAGTGAGCTT
GGACGTGCTGGACATGGTGGGCATGGTCCTGGGGGAGATTTGTCTACTGG
AGAAGGGGATATTCATATTCGAGCGGTGACCACTGGCATTGGCTCGCCTG
AAGGAGCAGTCAATGATATCCGAGATGCAGTCTGTTACTGTATGTCATTA
TCCAGATGCACAGGTGCAGGAGATGCAGGAGGAAGTGCTTCGAATGGTCG
ACTTTCTCTTTAATCTGTTACTGTATGTCATTATCCAGATGCACAGGTGC
AGGAGATGCAGGAGGAAGTGCTTCGAATGGTCGACTTTCTCTTTAA
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