mRNA_H-paniculata_contig4922.12100.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4922.12100.1
Unique NamemRNA_H-paniculata_contig4922.12100.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4922.12100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4922contigH-paniculata_contig4922:2869..5845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1272
Cds size1269
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4922.12100.1prot_H-paniculata_contig4922.12100.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4922 2869..5843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930455.0037909-CDS-H-paniculata_contig4922:2868..33391622930455.0037909-CDS-H-paniculata_contig4922:2868..3339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4922 2869..3339 +
1691481299.1990137-CDS-H-paniculata_contig4922:2868..33391691481299.1990137-CDS-H-paniculata_contig4922:2868..3339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4922 2869..3339 +
1622930455.023008-CDS-H-paniculata_contig4922:4549..47581622930455.023008-CDS-H-paniculata_contig4922:4549..4758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4922 4550..4758 +
1691481299.2103884-CDS-H-paniculata_contig4922:4549..47581691481299.2103884-CDS-H-paniculata_contig4922:4549..4758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4922 4550..4758 +
1622930455.0453258-CDS-H-paniculata_contig4922:5254..58431622930455.0453258-CDS-H-paniculata_contig4922:5254..5843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4922 5255..5843 +
1691481299.2187657-CDS-H-paniculata_contig4922:5254..58431691481299.2187657-CDS-H-paniculata_contig4922:5254..5843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4922 5255..5843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4922.12100.1

>prot_H-paniculata_contig4922.12100.1 ID=prot_H-paniculata_contig4922.12100.1|Name=mRNA_H-paniculata_contig4922.12100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=423bp
GGGGPSVPFSYRTSSPAPPPRKPKKATKTAADTNAGQGGNSSGGGPSVPP
LQRTSLSPVPSKKPKKPTKIAADSYAGGGGSGGSGGGSGDGPSVPFSPRT
SLSPGPSKKPKKASKTADANASQGGGGGGGRGGGGGAGKPGGHASVGRSA
TTAGERTAAEAMVAAAGAGARSVATASLPGTPIPMPGTPPPMMGIPSPVL
GTPPPQAKKKVRNREKEKIARRLRREKVRKEAAEKKAAEEAAAAAAAGTQ
DGSPHEHSTGSNKEQLNDKHALSSSGTPGSGKKDKGSSSAAPGSKKEKGS
SSTAGGKKEKGSSSTVVDKKEKGSSSSAAGAGKKDKGSSSTAGGKKDESA
AAGVAGPASPSAASRKGEKARERSPSATSAAAGKKKEKVPKGGGTCGTAS
SSAGAAAGTAGGGGGTAGGGGGG
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mRNA from alignment at H-paniculata_contig4922:2869..5845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4922.12100.1 ID=mRNA_H-paniculata_contig4922.12100.1|Name=mRNA_H-paniculata_contig4922.12100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2977bp|location=Sequence derived from alignment at H-paniculata_contig4922:2869..5845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGTGGTGGTCCATCAGTACCTTTCTCATACCGAACTTCATCCCCCGC
TCCTCCCCCGAGAAAGCCCAAGAAGGCTACCAAGACTGCTGCTGATACTA
ACGCTGGCCAAGGTGGCAATAGCAGTGGTGGTGGCCCATCAGTACCTCCT
TTACAGCGAACGTCACTGTCCCCTGTTCCTTCTAAAAAGCCCAAGAAACC
AACCAAGATTGCTGCTGATTCTTACGCTGGCGGCGGTGGCAGTGGTGGTA
GTGGTGGCGGTAGTGGTGATGGCCCATCAGTGCCTTTTTCACCGCGGACT
TCGTTATCCCCTGGTCCTTCTAAAAAGCCCAAGAAGGCTAGCAAGACTGC
TGATGCTAACGCTAGCCAAGGTGGTGGTGGTGGTGGTGGTCGTGGCGGAG
GTGGAGGTGCCGGTAAGCCGGGCGGACACGCTTCCGTAGGAAGATCTGCT
ACTACCGCTGGAGAGAGGACGGTGAGTTATTTCTGTTTTTCGTGGTGAGA
CGAGATGGATGGGTTTTATGTGTGATGTGAAGTTTTCAAGTAGGACAGCG
GCAGGGAGAGGGGGAAAGGAAGGTTGAAGAAACGCCTATCCGTAGATCGG
CTTGAAAAAAATACTCATATCATGATCTCTTGAAAGGCATTTATTCATGC
ATCCCGAAGGGTGCACAACGCACAATTCCGACTGATCGTACTGTTGAAGT
GGAACTATTTTTTCTTGCCTGACCCCTCTGCAAGTCGACTTGAATAATCA
ACACAGATCGACTCAAATTATCCCCTCTCCCTCTCCCCTGCCCCCTAGTG
TAGCCTGTTTCTTGCACACAATCATACTGATCAATATTGGTATGTGCGAG
TCGGCTCGTAGGGATCACCGGTGGATACAAGTTTGCTAGCAATCAGGAGT
GTACCGATTTTCACGATATATGGCTGCAAAATGAGCGGAATGATCTATCA
AAAAACGGATCGGTCCGAACTCTGGAAGTTTTTCGCTTTCGTTTCTCTTT
TTAGTTTTGCTGATGGTCGTATTCGGTAGCTCCTTATTGGTCATCATCTA
ATTTTGCTGATTTGTGTACACAATTGAAAATTGACATGAGCTATATAACC
TTAACAACATGGTAGCCCCCCCCCCCCACCCCTCCACCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACTTTCCTCCTGTAG
GTTTTTATTCCGCTAATGAAGATATCTAGCCCGGATTAATTGCAGGCCAA
ACAATCACAGCATTCACAGATGTAAATTTTTGTTCTCAACCAAGGAAAAA
ATGGTGTCCCCTCGAGAGCCACCAATCTGTTGTTTTGCCCTGGAAGCATC
ATAGTCTCAGTTCATTTTTTTTGCCCAGTTTATGGAGAATAACCAAGTAA
TCCAGCAGCTTGAACATGCTGAGGATACTAACCCCCCCCCCCCCCCGCGC
GCGCCCGGGGCACCGGTGGTGATATCTAAATTTTTCGAACGACTGACTGT
CTGTCATGGACGTTCGCTAGCTTTCCCCTGTTCCCGTTGTGAAATACTGC
CCTTCATGCACCCACTCAACCATGGCACGCTCTTCCTCCCGCCCTCTTCT
CGTGCCGCCGCTGTCTTCATCCCCGCTTCCGCTTCCCTCGTTCCACAACA
TGCACCCACCCACAACTTACCTCTGTCTCAGGCGGCGGAAGCTATGGTTG
CGGCGGCGGGCGCAGGGGCGAGGAGTGTGGCTACGGCGTCGTTGCCGGGT
ACCCCCATTCCGATGCCGGGTACCCCCCCGCCGATGATGGGGATCCCATC
TCCGGTGCTGGGTACGCCTCCTCCGCAGGCGAAGAAAAAAGTTAGAAACC
GCGAGAAGGAGAAGATCGCGCGTAGGCTACGCCGGGAAAAGTGCGTGATG
AAATACAATAATCTGAATTTGTTTCGATGATTTTTTAGGGGAAAGAAATA
AAGAAAGAAGCACCAAATGGTTTGTTTTTCACCGGGAAAAAAATATATGT
GAGAATTACCGAATAACCCCCGTTTTCATAGTGCCGTAGTTCTAGTGTTT
TTTACAGGAGGTGATCAAAATTTTGAAAGGACGTAAGTTAACAATGTTCT
ATACTTGTATGTGTATATATATATATGTGTGTGTCATTCATATTTGTGCA
TGTGAAGAATCAATTTTCTTGTTTTAACCGCTTTTCCCACGTAGTGTAAT
CCGGTGTTAAAGCTTTAGTTGAGATATCGGTGGCAGGTGGATCGACTTAG
GAATGAAAATTACGGTACCCCTTATTGATGTGATTTTAGTGATAAGTGCA
CACAACTCAAGTTTGAGGCATAACCCCCAAATCACGGTGGCCTCCCCTTT
CTTACACATATTGTGCGGGTACATTTGGCTGCTCAGGGTGAGAAAAGAAG
CTGCTGAGAAAAAAGCTGCGGAGGAAGCCGCCGCCGCCGCCGCCGCCGGG
ACTCAAGACGGTTCACCGCATGAACACAGCACTGGCAGCAACAAGGAGCA
GCTCAACGATAAGCACGCGCTATCATCATCCGGTACTCCTGGTAGTGGTA
AAAAAGACAAGGGGTCCTCATCTGCAGCCCCTGGTAGTAAGAAGGAAAAG
GGGTCATCCTCCACAGCTGGTGGCAAGAAAGAGAAGGGGTCATCATCCAC
AGTGGTGGATAAGAAGGAGAAAGGATCCTCGTCATCTGCAGCTGGTGCTG
GTAAGAAGGACAAGGGGTCATCATCCACAGCTGGTGGCAAGAAAGACGAA
TCGGCGGCGGCGGGGGTGGCGGGTCCTGCGTCGCCTTCGGCTGCTAGTCG
GAAGGGGGAGAAGGCTAGGGAGCGGAGCCCATCAGCAACATCAGCTGCGG
CCGGTAAAAAGAAGGAGAAGGTGCCGAAGGGTGGTGGCACTTGTGGCACT
GCTAGTAGTAGTGCTGGTGCTGCCGCCGGTACCGCTGGAGGTGGTGGTGG
AACGGCCGGTGGTGGTGGTGGTGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4922:2869..5845+

>mRNA_H-paniculata_contig4922.12100.1 ID=mRNA_H-paniculata_contig4922.12100.1|Name=mRNA_H-paniculata_contig4922.12100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2538bp|location=Sequence derived from alignment at H-paniculata_contig4922:2869..5845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGTGGTGGTCCATCAGTACCTTTCTCATACCGAACTTCATCCCCCGC
TCCTCCCCCGAGAAAGCCCAAGAAGGCTACCAAGACTGCTGCTGATACTA
ACGCTGGCCAAGGTGGCAATAGCAGTGGTGGTGGCCCATCAGTACCTCCT
TTACAGCGAACGTCACTGTCCCCTGTTCCTTCTAAAAAGCCCAAGAAACC
AACCAAGATTGCTGCTGATTCTTACGCTGGCGGCGGTGGCAGTGGTGGTA
GTGGTGGCGGTAGTGGTGATGGCCCATCAGTGCCTTTTTCACCGCGGACT
TCGTTATCCCCTGGTCCTTCTAAAAAGCCCAAGAAGGCTAGCAAGACTGC
TGATGCTAACGCTAGCCAAGGTGGTGGTGGTGGTGGTGGTCGTGGCGGAG
GTGGAGGTGCCGGTAAGCCGGGCGGACACGCTTCCGTAGGAAGATCTGCT
ACTACCGCTGGAGAGAGGACGGGTGGTGGTGGTCCATCAGTACCTTTCTC
ATACCGAACTTCATCCCCCGCTCCTCCCCCGAGAAAGCCCAAGAAGGCTA
CCAAGACTGCTGCTGATACTAACGCTGGCCAAGGTGGCAATAGCAGTGGT
GGTGGCCCATCAGTACCTCCTTTACAGCGAACGTCACTGTCCCCTGTTCC
TTCTAAAAAGCCCAAGAAACCAACCAAGATTGCTGCTGATTCTTACGCTG
GCGGCGGTGGCAGTGGTGGTAGTGGTGGCGGTAGTGGTGATGGCCCATCA
GTGCCTTTTTCACCGCGGACTTCGTTATCCCCTGGTCCTTCTAAAAAGCC
CAAGAAGGCTAGCAAGACTGCTGATGCTAACGCTAGCCAAGGTGGTGGTG
GTGGTGGTGGTCGTGGCGGAGGTGGAGGTGCCGGTAAGCCGGGCGGACAC
GCTTCCGTAGGAAGATCTGCTACTACCGCTGGAGAGAGGACGGCGGCGGA
AGCTATGGTTGCGGCGGCGGGCGCAGGGGCGAGGAGTGTGGCTACGGCGT
CGTTGCCGGGTACCCCCATTCCGATGCCGGGTACCCCCCCGCCGATGATG
GGGATCCCATCTCCGGTGCTGGGTACGCCTCCTCCGCAGGCGAAGAAAAA
AGTTAGAAACCGCGAGAAGGAGAAGATCGCGCGTAGGCTACGCCGGGAAA
AGCGGCGGAAGCTATGGTTGCGGCGGCGGGCGCAGGGGCGAGGAGTGTGG
CTACGGCGTCGTTGCCGGGTACCCCCATTCCGATGCCGGGTACCCCCCCG
CCGATGATGGGGATCCCATCTCCGGTGCTGGGTACGCCTCCTCCGCAGGC
GAAGAAAAAAGTTAGAAACCGCGAGAAGGAGAAGATCGCGCGTAGGCTAC
GCCGGGAAAAGGTGAGAAAAGAAGCTGCTGAGAAAAAAGCTGCGGAGGAA
GCCGCCGCCGCCGCCGCCGCCGGGACTCAAGACGGTTCACCGCATGAACA
CAGCACTGGCAGCAACAAGGAGCAGCTCAACGATAAGCACGCGCTATCAT
CATCCGGTACTCCTGGTAGTGGTAAAAAAGACAAGGGGTCCTCATCTGCA
GCCCCTGGTAGTAAGAAGGAAAAGGGGTCATCCTCCACAGCTGGTGGCAA
GAAAGAGAAGGGGTCATCATCCACAGTGGTGGATAAGAAGGAGAAAGGAT
CCTCGTCATCTGCAGCTGGTGCTGGTAAGAAGGACAAGGGGTCATCATCC
ACAGCTGGTGGCAAGAAAGACGAATCGGCGGCGGCGGGGGTGGCGGGTCC
TGCGTCGCCTTCGGCTGCTAGTCGGAAGGGGGAGAAGGCTAGGGAGCGGA
GCCCATCAGCAACATCAGCTGCGGCCGGTAAAAAGAAGGAGAAGGTGCCG
AAGGGTGGTGGCACTTGTGGCACTGCTAGTAGTAGTGCTGGTGCTGCCGC
CGGTACCGCTGGAGGTGGTGGTGGAACGGCCGGTGGTGGTGGTGGTGGTG
GTGAGAAAAGAAGCTGCTGAGAAAAAAGCTGCGGAGGAAGCCGCCGCCGC
CGCCGCCGCCGGGACTCAAGACGGTTCACCGCATGAACACAGCACTGGCA
GCAACAAGGAGCAGCTCAACGATAAGCACGCGCTATCATCATCCGGTACT
CCTGGTAGTGGTAAAAAAGACAAGGGGTCCTCATCTGCAGCCCCTGGTAG
TAAGAAGGAAAAGGGGTCATCCTCCACAGCTGGTGGCAAGAAAGAGAAGG
GGTCATCATCCACAGTGGTGGATAAGAAGGAGAAAGGATCCTCGTCATCT
GCAGCTGGTGCTGGTAAGAAGGACAAGGGGTCATCATCCACAGCTGGTGG
CAAGAAAGACGAATCGGCGGCGGCGGGGGTGGCGGGTCCTGCGTCGCCTT
CGGCTGCTAGTCGGAAGGGGGAGAAGGCTAGGGAGCGGAGCCCATCAGCA
ACATCAGCTGCGGCCGGTAAAAAGAAGGAGAAGGTGCCGAAGGGTGGTGG
CACTTGTGGCACTGCTAGTAGTAGTGCTGGTGCTGCCGCCGGTACCGCTG
GAGGTGGTGGTGGAACGGCCGGTGGTGGTGGTGGTGGT
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