mRNA_H-paniculata_contig4921.12096.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4921.12096.1
Unique NamemRNA_H-paniculata_contig4921.12096.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: D8LPS1_ECTSI (Dual-specificity tyrosine-phosphorylation regulated kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS1_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 2.850e-133
Identity = 205/236 (86.86%), Postives = 219/236 (92.80%), Query Frame = 1
Query:  115 GSHDEEFEEEELESFELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRRRRGEDSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLPYGAKVDM 822
            G   +E  EEELESF+LR+VYAKGRTGFQESKAFDWPEG +VAG YEVCGYIG AAFSTAL CRDLRR RG D+VCLKVIKNNKDFFDQSLDEIKLL RIK GGDPDEHHVLHM DFFY+EEHLVIVSELLG NLYEF KAVKEAGHP YFTLPRLCKITRQCL+ALSY+NSLGLVHCDVKPENILLS+YG+AEVKLIDFGSSCF+TDRLTTYTQSRSYRAPEV++GLPYGAKVD+
Sbjct: 1313 GVEAQEETEEELESFDLRIVYAKGRTGFQESKAFDWPEGCVVAGRYEVCGYIGKAAFSTALECRDLRRERGRDAVCLKVIKNNKDFFDQSLDEIKLLHRIKAGGDPDEHHVLHMFDFFYYEEHLVIVSELLGDNLYEFSKAVKEAGHPEYFTLPRLCKITRQCLEALSYINSLGLVHCDVKPENILLSHYGRAEVKLIDFGSSCFVTDRLTTYTQSRSYRAPEVIVGLPYGAKVDV 1548          
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: A0A6H5KDN4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN4_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 6.320e-132
Identity = 201/228 (88.16%), Postives = 216/228 (94.74%), Query Frame = 1
Query:  139 EEELESFELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRRRRGEDSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLPYGAKVDM 822
            EEELESF+LR+VYAKGRTGFQESKAFDWPEG +VAG YEVCGYIG AAFSTAL CRDLRR RG D+VCLKVIKNNKDFFDQSLDEIKLLQRIK GGDPDEHHVLHM DFFY+EEHLVIV+ELLG NLYEF KAVKEAGHP YFTLPRLCKITRQCL+ALSY+NSLGLVHCDVKPENILLS+YG+AEVKLIDFGSSCF+TD+LTTYTQSRSYRAPEV++GLPYG KVD+
Sbjct: 1470 EEELESFDLRIVYAKGRTGFQESKAFDWPEGCVVAGRYEVCGYIGKAAFSTALECRDLRRERGRDAVCLKVIKNNKDFFDQSLDEIKLLQRIKAGGDPDEHHVLHMLDFFYYEEHLVIVTELLGDNLYEFSKAVKEAGHPEYFTLPRLCKITRQCLEALSYINSLGLVHCDVKPENILLSHYGRAEVKLIDFGSSCFVTDQLTTYTQSRSYRAPEVIVGLPYGVKVDV 1697          
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: A0A7S2GV29_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV29_9STRA)

HSP 1 Score: 276 bits (705), Expect = 9.570e-88
Identity = 138/234 (58.97%), Postives = 177/234 (75.64%), Query Frame = 1
Query:  124 DEEFEEEELESFELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRRRRGE-DSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLPYGAKVDM 822
            DE    E L +F+L+V+Y K  TGF ESK       +++A  Y V   IG AAFS+AL C DL     +  SVCLK +KNNKD FDQSLDEI+LLQ I + GDP+EHH+L M DFFY++EHL IVSELL +NLYE+ + +++ G  PYFTLP L KIT QCL+AL +V++LG++HCD+KPENI++++Y + EVKLIDFGSSCF TD +TTY QSRSYRAPEVVLG+PY A++D+
Sbjct:   21 DEAMNWEALGTFDLKVIYRKMHTGFDESKDVLPERNTVIANRYLVERTIGQAAFSSALECVDLASDPEDPQSVCLKRVKNNKDCFDQSLDEIQLLQYINQSGDPEEHHILKMYDFFYYKEHLYIVSELLRRNLYEYDQYIRKTGEEPYFTLPNLKKITVQCLEALQFVHNLGIIHCDLKPENIVINSYSRVEVKLIDFGSSCFQTDEMTTYIQSRSYRAPEVVLGVPYDARIDV 254          
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: A0A7S2E5Z7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E5Z7_9STRA)

HSP 1 Score: 276 bits (705), Expect = 1.320e-87
Identity = 138/234 (58.97%), Postives = 177/234 (75.64%), Query Frame = 1
Query:  124 DEEFEEEELESFELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRRRRGE-DSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLPYGAKVDM 822
            DE    E L +F+L+V+Y K  TGF ESK       +++A  Y V   IG AAFS+AL C DL     +  SVCLK +KNNKD FDQSLDEI+LLQ I + GDP+EHH+L M DFFY++EHL IVSELL +NLYE+ + +++ G  PYFTLP L KIT QCL+AL +V++LG++HCD+KPENI++++Y + EVKLIDFGSSCF TD +TTY QSRSYRAPEVVLG+PY A++D+
Sbjct:   21 DEAMNWEALGTFDLKVIYRKMHTGFDESKDVLPERNTVIANRYLVERTIGQAAFSSALECVDLASDPEDPQSVCLKRVKNNKDCFDQSLDEIQLLQYINQSGDPEEHHILKMYDFFYYKEHLYIVSELLRRNLYEYDQYIRKTGEEPYFTLPNLKKITVQCLEALQFVHNLGIIHCDLKPENIVINSYSRVEVKLIDFGSSCFQTDEMTTYIQSRSYRAPEVVLGVPYDARIDV 254          
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: A0A1E7F980_9STRA (Kinase-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F980_9STRA)

HSP 1 Score: 269 bits (687), Expect = 1.240e-85
Identity = 134/228 (58.77%), Postives = 173/228 (75.88%), Query Frame = 1
Query:  145 ELESFELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRR--RRGEDSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLPYGAKVDM 822
            +LE F+L +++    TGF+ +K      G+++AG Y V   +G+AAFSTA  C DL      G + VCLKVIKN KDFFDQSLDEIK+L+ +++ G  DE+++L ++ FFY+ EHL+IV+ELL QNL+EFGK V +    PYFTLPRL  ITRQCL AL +V+SLGLVH DVKPENILL +Y +A++KLIDFGSSC+LTDR ++Y QSRSYRAPEVVLGLPY  K+D+
Sbjct:    3 DLEYFQLPIIFKSHVTGFEPTKDMALEPGNVIAGQYLVESELGSAAFSTAYRCIDLSSDDTDGHEEVCLKVIKNTKDFFDQSLDEIKILELLRQTGKCDENYILRVKTFFYYREHLIIVTELLRQNLFEFGKFVLDNNEEPYFTLPRLAYITRQCLVALRFVHSLGLVHSDVKPENILLGSYSRAQIKLIDFGSSCYLTDRQSSYIQSRSYRAPEVVLGLPYDGKIDV 230          
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: A0A7S2CNQ1_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2CNQ1_9DINO)

HSP 1 Score: 269 bits (687), Expect = 4.390e-85
Identity = 132/225 (58.67%), Postives = 171/225 (76.00%), Query Frame = 1
Query:  148 LESFELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRRRRGEDSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLPYGAKVDM 822
             +SF LRVV+ + +TGF+ESK F     S+V   Y++  Y+G+AAFS A+ C DL  ++    VC+K+IKN+KDFFDQSLDEIKLL+ I   G+ DEH VL + D+FY +EHL+IV+ELL  NLYEF K  +EAG  PYFTL R+ KIT+Q L AL YV+SL L+HCD+KPENIL+ +Y + EVK+IDFGSSCF+ D L++Y QSRSYRAPEV+LGLPY  K+D+
Sbjct:   54 FDSFNLRVVFERDKTGFEESKEFAINMNSVVGARYQILEYLGSAAFSRAVQCLDLETKK---MVCMKIIKNDKDFFDQSLDEIKLLKFININGNVDEHGVLRLYDYFYHKEHLIIVTELLRDNLYEFSKFNREAGDAPYFTLGRIQKITKQVLSALEYVHSLRLIHCDLKPENILIKSYDRCEVKVIDFGSSCFVDDHLSSYVQSRSYRAPEVMLGLPYNQKIDL 275          
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: A0A8J9S1R1_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S1R1_PHATR)

HSP 1 Score: 265 bits (676), Expect = 1.090e-84
Identity = 132/230 (57.39%), Postives = 173/230 (75.22%), Query Frame = 1
Query:  145 ELESFELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRRRRGEDS----VCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLPYGAKVDM 822
            +LE F L +++    TGF+ +K     +G++VAG Y V G +G+AAFSTA  C DL   +  D     VCLKVIKN KDFFDQSLDEIK+L+ +++ G  +E+H++ M+ FFY  EHL+IV+ELL QNL+EFGK + E    PYFT+ RL  ITRQCL AL +V++LGLVH DVKPENILL++Y +A++KLIDFGSSC+LTDR ++Y QSRSYRAPEVVLGLPY  ++D+
Sbjct:    1 DLEYFYLPIIFKSHVTGFEPTKDLFLEQGNIVAGQYLVEGELGSAAFSTAYRCTDLNSDQDSDGEHEEVCLKVIKNTKDFFDQSLDEIKILELLRQTGKCNENHLIEMKTFFYHREHLIIVTELLRQNLFEFGKFIIEDNEEPYFTMNRLAYITRQCLTALRFVHNLGLVHSDVKPENILLASYSRAQIKLIDFGSSCYLTDRQSSYIQSRSYRAPEVVLGLPYDGRIDI 230          
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: A0A7S3TQK2_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TQK2_EMIHU)

HSP 1 Score: 266 bits (680), Expect = 5.590e-84
Identity = 134/228 (58.77%), Postives = 171/228 (75.00%), Query Frame = 1
Query:  139 EEELESFELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRRRRGEDSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLPYGAKVDM 822
            E   E+ ELRVV+ + RTGF+E+K F     SL+A  Y+V  Y+G+AAFS A+ C DL    GE  VC+K+IKNNKDFFDQSLDEIKLL+ +++    DEHHVL M D+FY  EHL +V ELL  NLYEF +  +++G   YF LPRL +I +QCL+AL +V+ LGL+HCD+KPENIL+ +Y + EVK+IDFGSSCF TD L++Y QSRSYRAPEVVLGL YG K+D+
Sbjct:   66 EARFETLELRVVHERARTGFEENKDFPIRLHSLIASRYQVKEYLGSAAFSKAVQCLDLHT--GE-MVCIKIIKNNKDFFDQSLDEIKLLRYLRKHDPRDEHHVLRMYDYFYHREHLFLVCELLRDNLYEFSRFNRDSGGERYFQLPRLRRIAKQCLEALVFVHRLGLIHCDLKPENILIQSYSRCEVKVIDFGSSCFTTDHLSSYVQSRSYRAPEVVLGLGYGQKIDL 290          
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: A0A7S3ADN7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ADN7_9EUKA)

HSP 1 Score: 264 bits (674), Expect = 8.660e-84
Identity = 127/220 (57.73%), Postives = 166/220 (75.45%), Query Frame = 1
Query:  163 LRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRRRRGEDSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLPYGAKVDM 822
            L+V++ +GRTGF+E+K F     SL+A  Y+V  Y+G+AAFS A+ C DL      + VC+K+IKNNKDFFDQSLDEIKLL  +K   + DEH+V+H+ DFFY +EHL IV ELL  NLYEF +  +E+   PYFT+PRL +I +QCL AL + + L L+HCD+KPENIL+ +Y + EVK+IDFGSSCF TD L++Y QSRSYRAPEV+LGLPY  K+D+
Sbjct:    8 LKVIHERGRTGFEEAKDFPIRINSLIASRYQVKEYLGSAAFSKAVQCLDLH---SGEMVCMKIIKNNKDFFDQSLDEIKLLAYLKHHDEADEHNVVHIYDFFYHKEHLFIVCELLRDNLYEFSRYNRESAGEPYFTMPRLRRIAKQCLDALVFTHKLDLIHCDLKPENILIKSYSRCEVKVIDFGSSCFSTDHLSSYVQSRSYRAPEVILGLPYDHKIDI 224          
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Match: A0A835ZC55_9STRA (Kinase domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC55_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.710e-83
Identity = 132/227 (58.15%), Postives = 168/227 (74.01%), Query Frame = 1
Query:  142 EELESFELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCRDLRRRRGEDSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHMRDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCLQALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYTQSRSYRAPEVVLGLP-YGAKVD 819
            E+L+SF LRVV+A+GRTGFQ ++    P  S++AG Y+VC +I +A  S ALHC DL    G+  VCLKV+KN+KD FDQSLDEI+LL+ +   GD + HH L M D FY+ EHL IVSELLG+NLY+F + +KE G PPYFT  R+  I  QCL+ALS++N L L+HCDVKPENI + +Y +  VKLIDFGS+CF +DR+  Y QSR YRAPEV+LGLP +G  VD
Sbjct:    4 EQLDSFALRVVFARGRTGFQATRKLHAPVNSVIAGRYQVCRHIDSAVSSDALHCVDLHE--GDRPVCLKVVKNDKDLFDQSLDEIQLLRYMGARGDAERHHFLAMHDCFYYREHLFIVSELLGENLYQFSQRLKEGGLPPYFTPVRVRGIMHQCLEALSFMNRLSLMHCDVKPENIAMRDYAQGRVKLIDFGSACFTSDRVAAYMQSRFYRAPEVLLGLPHFGPGVD 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4921.12096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPS1_ECTSI2.850e-13386.86Dual-specificity tyrosine-phosphorylation regulate... [more]
A0A6H5KDN4_9PHAE6.320e-13288.16Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2GV29_9STRA9.570e-8858.97Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2E5Z7_9STRA1.320e-8758.97Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1E7F980_9STRA1.240e-8558.77Kinase-like protein n=1 Tax=Fragilariopsis cylindr... [more]
A0A7S2CNQ1_9DINO4.390e-8558.67Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A8J9S1R1_PHATR1.090e-8457.39Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A7S3TQK2_EMIHU5.590e-8458.77Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A7S3ADN7_9EUKA8.660e-8457.73Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A835ZC55_9STRA1.710e-8358.15Kinase domain protein n=1 Tax=Tribonema minus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4921contigH-paniculata_contig4921:835..3381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score273.5
Seed ortholog evalue1.1e-70
Seed eggNOG ortholog42345.XP_008789217.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein kinase domain
EggNOG OGs37HW0@33090,3GDEN@35493,3KRQA@4447,KOG0667@1,KOG0667@2759
COG Functional cat.T
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Exons5
Model size822
Cds size816
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4921.12096.1prot_H-paniculata_contig4921.12096.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4921 835..3375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930454.7022567-CDS-H-paniculata_contig4921:834..8921622930454.7022567-CDS-H-paniculata_contig4921:834..892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 835..892 -
1691481299.0973103-CDS-H-paniculata_contig4921:834..8921691481299.0973103-CDS-H-paniculata_contig4921:834..892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 835..892 -
1622930454.7229726-CDS-H-paniculata_contig4921:1031..11861622930454.7229726-CDS-H-paniculata_contig4921:1031..1186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 1032..1186 -
1691481299.1089394-CDS-H-paniculata_contig4921:1031..11861691481299.1089394-CDS-H-paniculata_contig4921:1031..1186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 1032..1186 -
1622930454.736931-CDS-H-paniculata_contig4921:1797..19741622930454.736931-CDS-H-paniculata_contig4921:1797..1974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 1798..1974 -
1691481299.1202085-CDS-H-paniculata_contig4921:1797..19741691481299.1202085-CDS-H-paniculata_contig4921:1797..1974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 1798..1974 -
1622930454.7607799-CDS-H-paniculata_contig4921:2585..27621622930454.7607799-CDS-H-paniculata_contig4921:2585..2762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 2586..2762 -
1691481299.1309657-CDS-H-paniculata_contig4921:2585..27621691481299.1309657-CDS-H-paniculata_contig4921:2585..2762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 2586..2762 -
1622930454.77802-CDS-H-paniculata_contig4921:3126..33751622930454.77802-CDS-H-paniculata_contig4921:3126..3375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 3127..3375 -
1691481299.140703-CDS-H-paniculata_contig4921:3126..33751691481299.140703-CDS-H-paniculata_contig4921:3126..3375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 3127..3375 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930454.8060198-UTR-H-paniculata_contig4921:3375..33811622930454.8060198-UTR-H-paniculata_contig4921:3375..3381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4921 3376..3381 -
1691481299.149348-UTR-H-paniculata_contig4921:3375..33811691481299.149348-UTR-H-paniculata_contig4921:3375..3381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4921 3376..3381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4921.12096.1

>prot_H-paniculata_contig4921.12096.1 ID=prot_H-paniculata_contig4921.12096.1|Name=mRNA_H-paniculata_contig4921.12096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp
MVPSGGASGARGGDGDGGAAVGGGGGGGGVLAHHVIGSHDEEFEEEELES
FELRVVYAKGRTGFQESKAFDWPEGSLVAGCYEVCGYIGTAAFSTALHCR
DLRRRRGEDSVCLKVIKNNKDFFDQSLDEIKLLQRIKEGGDPDEHHVLHM
RDFFYFEEHLVIVSELLGQNLYEFGKAVKEAGHPPYFTLPRLCKITRQCL
QALSYVNSLGLVHCDVKPENILLSNYGKAEVKLIDFGSSCFLTDRLTTYT
QSRSYRAPEVVLGLPYGAKVDM
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mRNA from alignment at H-paniculata_contig4921:835..3381-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4921.12096.1 ID=mRNA_H-paniculata_contig4921.12096.1|Name=mRNA_H-paniculata_contig4921.12096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2547bp|location=Sequence derived from alignment at H-paniculata_contig4921:835..3381- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGCGATGGTGCCGTCGGGCGGAGCGAGTGGGGCGCGCGGGGGGGACGG GGATGGAGGGGCGGCCGTCGGTGGCGGGGGTGGGGGCGGAGGCGTTCTCG CGCACCATGTAATCGGGAGTCATGATGAAGAGTTTGAGGAGGAGGAGCTG GAGAGTTTTGAGCTGAGGGTGGTCTACGCCAAGGGGCGGACGGGGTTTCA AGAGAGCAAGGCGTTCGACTGGCCGGAAGGGTCGCTGGTTGCTGGTTGTT ACGAGGTACCAATGTTGAGTGTGTGTGTTTAGTGTTGTGTATACTGTGAG AGTATTATTTTGCTTCGGCAGGCATTTTTTTTGCCGCGTATTTGTATTAA CATTTTTCCCGGAAACATATGGGAAACAGAAGTGGATTATGTGGAATTGA ATGCATAACCCACCGATATCGGACGGATTTTGCAAACCATCCTTTTGACA TGACACTGTGTATACCAGTCGAGGTGTTTATTACTCAAGTTGCCTATCGC GAAGCATGATTAAGGCACGTCGTATACATGCCAGTACACGCATACTAGAT AAATATGGTGAGAATCTCATCACGTCGATCAGGTGATTATTCATGTTGTG ATTTGATGGATAATGGCAGGTCTGCGGCTACATCGGGACCGCCGCATTCA GCACGGCGCTGCACTGCCGCGATCTGAGGAGAAGGCGCGGAGAAGATTCG GTGTGCCTCAAGGTGATCAAGAACAACAAGGACTTCTTCGACCAGAGTCT GGACGAGATAAAGCTGTTGCAGCGCATAAAGGAGGGCGGCGATCCGGTAA GATAACCAGAGCGCTCACTGTGTGCATAAGAGAAATAAGACTGTTTTTTT TTCCGGACTGTGCGCTTATCCCCTGTTTATGTGCTTTTTTTTTGTACACA TCAATTCTTTGCGTTCTTTTGGATATTTTGATCCCACCATGCTAGTTATT TTTTGCTCAAATTCACTTTTGTTTCTTCCATCTTATATCCTCATGTACCC GCGAATGTTCCCAATATTCGAGAATATTTTCAGTCCGGATGTGGTGCAGT GGCATACACCTTTTTGTCCGGTTTCAGCTTGTGTCATCGTTGAACGCCCA TCGCACTCCTTTGTTCCTTTTTGGTCATGATGATCCATGTAATGAATACC CACCGTGATTGATTGACGCGATCTGCAAGCTCCGGCTGTTAACGGTACAT GGCCAACTTATCTTCCTGTGATAATCGTGATTTTGTGCCGATATTTTCTC CTGCTGTGCCAAATTGATGACTATCCAAGGCACGGTACCGTGCAGACTTT GAAAAATGTGAAAAATCATGATGATCATCACTAGCATTACATTGGTATGT ACCTCAGCAACAGTTTAACTGACTTGCTGATGACAAACCAACGGGGAAAA AATTCAGGACGAGCACCATGTGCTGCACATGCGCGACTTCTTCTACTTCG AGGAGCACCTGGTTATCGTCAGTGAGCTGCTCGGGCAGAACCTGTACGAG TTTGGCAAGGCCGTCAAGGAGGCTGGTCATCCCCCATACTTCACGCTCCC CCGCCTCTGCAAGATCACGAGGCAGTGCCTTCAGGTGGGCACATAGACCT GAGAGAGAGAGAGAGATCTCATCGAGAGAAACAAGCACAAATACATGCCC TCTGCAATTGGCTGTAGTCTGAATGTTTCCCAGCTAGGCTGCGCTCAAGC AGTCCTTGATTTGCTCTCGACGCATAAGTATTCGTTTTTTATATTTGACT CATGTACAGAGTTGAAAAGCTGTTTGAAACGACCAGGACGACGGTCTTAC CTGAACTGACTCTCTCTACGGCTGCAGCAGCATGTGACCCCGTCATCGGC TCCGCCACCACTGCCAACTGAACACACAGGGGCATTCGTTCCACTAAATA ATCAGAGATGTGGAACCGATCATAGAGTGGATAATGACAAGGCAGGAAGG GAGGGTCTTGCGGCCAAAGGCGATAGTATCTGTATAATTTATGAGTTTTT CAACACTCAAAAATGGTTCACTTTACGTCTGAGAAAACGTGACAAGTTTT AGTCGACACGACTACGGTGGTGGTCTTATTTTCTCGGGCTTTTGTCATGT TGAGAGCGCTTTTCGACACCTCTCTTTTCTTTTCATTTTCTCCTCTGTAC CTGGTACATATTTGTCGTGCTATTGTATTGTTGGTATGGGTACAGGCTCT GTCGTACGTGAACTCTCTGGGACTGGTGCACTGTGATGTGAAGCCGGAGA ACATTCTGCTGTCTAACTACGGTAAGGCGGAGGTGAAGCTGATCGACTTC GGCTCCAGCTGTTTCTTGACCGACCGCCTCACCACCTACACGCAGAGCAG GTAAACGACAGGTACCCTATTAAAGGCGGTTACTACCGTTGATGCCCCGC CCTCTACATTAACGTAAATTACTACAGCTCTCCTCAAAGTTTTTTTTTCG GTGTCATTCTCCTCTTGTTGTGTTTTTTCCTTCCCTCAGGTCATATCGCG CGCCCGAAGTTGTTTTGGGATTGCCCTACGGCGCCAAGGTTGACATG
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Coding sequence (CDS) from alignment at H-paniculata_contig4921:835..3381-

>mRNA_H-paniculata_contig4921.12096.1 ID=mRNA_H-paniculata_contig4921.12096.1|Name=mRNA_H-paniculata_contig4921.12096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig4921:835..3381- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCCGTCGGGCGGAGCGAGTGGGGCGCGCGGGGGGGACGGGGATGG
AGGGGCGGCCGTCGGTGGCGGGGGTGGGGGCGGAGGCGTTCTCGCGCACC
ATGTAATCGGGAGTCATGATGAAGAGTTTGAGGAGGAGGAGCTGGAGAGT
TTTGAGCTGAGGGTGGTCTACGCCAAGGGGCGGACGGGGTTTCAAGAGAG
CAAGGCGTTCGACTGGCCGGAAGGGTCGCTGGTTGCTGGTTGTTACGAGA
TGGTGCCGTCGGGCGGAGCGAGTGGGGCGCGCGGGGGGGACGGGGATGGA
GGGGCGGCCGTCGGTGGCGGGGGTGGGGGCGGAGGCGTTCTCGCGCACCA
TGTAATCGGGAGTCATGATGAAGAGTTTGAGGAGGAGGAGCTGGAGAGTT
TTGAGCTGAGGGTGGTCTACGCCAAGGGGCGGACGGGGTTTCAAGAGAGC
AAGGCGTTCGACTGGCCGGAAGGGTCGCTGGTTGCTGGTTGTTACGAGGT
CTGCGGCTACATCGGGACCGCCGCATTCAGCACGGCGCTGCACTGCCGCG
ATCTGAGGAGAAGGCGCGGAGAAGATTCGGTGTGCCTCAAGGTGATCAAG
AACAACAAGGACTTCTTCGACCAGAGTCTGGACGAGATAAAGCTGTTGCA
GCGCATAAAGGAGGGCGGCGATCCGGTCTGCGGCTACATCGGGACCGCCG
CATTCAGCACGGCGCTGCACTGCCGCGATCTGAGGAGAAGGCGCGGAGAA
GATTCGGTGTGCCTCAAGGTGATCAAGAACAACAAGGACTTCTTCGACCA
GAGTCTGGACGAGATAAAGCTGTTGCAGCGCATAAAGGAGGGCGGCGATC
CGGACGAGCACCATGTGCTGCACATGCGCGACTTCTTCTACTTCGAGGAG
CACCTGGTTATCGTCAGTGAGCTGCTCGGGCAGAACCTGTACGAGTTTGG
CAAGGCCGTCAAGGAGGCTGGTCATCCCCCATACTTCACGCTCCCCCGCC
TCTGCAAGATCACGAGGCAGTGCCTTCAGGACGAGCACCATGTGCTGCAC
ATGCGCGACTTCTTCTACTTCGAGGAGCACCTGGTTATCGTCAGTGAGCT
GCTCGGGCAGAACCTGTACGAGTTTGGCAAGGCCGTCAAGGAGGCTGGTC
ATCCCCCATACTTCACGCTCCCCCGCCTCTGCAAGATCACGAGGCAGTGC
CTTCAGGCTCTGTCGTACGTGAACTCTCTGGGACTGGTGCACTGTGATGT
GAAGCCGGAGAACATTCTGCTGTCTAACTACGGTAAGGCGGAGGTGAAGC
TGATCGACTTCGGCTCCAGCTGTTTCTTGACCGACCGCCTCACCACCTAC
ACGCAGAGCAGGCTCTGTCGTACGTGAACTCTCTGGGACTGGTGCACTGT
GATGTGAAGCCGGAGAACATTCTGCTGTCTAACTACGGTAAGGCGGAGGT
GAAGCTGATCGACTTCGGCTCCAGCTGTTTCTTGACCGACCGCCTCACCA
CCTACACGCAGAGCAGGTCATATCGCGCGCCCGAAGTTGTTTTGGGATTG
CCCTACGGCGCCAAGGTTGACATGGTCATATCGCGCGCCCGAAGTTGTTT
TGGGATTGCCCTACGGCGCCAAGGTTGACATG
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