mRNA_H-paniculata_contig4921.12097.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4921.12097.1
Unique NamemRNA_H-paniculata_contig4921.12097.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4921.12097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4921contigH-paniculata_contig4921:3562..5680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size955
Cds size954
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930454.5549986-CDS-H-paniculata_contig4921:3561..43681622930454.5549986-CDS-H-paniculata_contig4921:3561..4368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 3562..4368 -
1691481299.0371623-CDS-H-paniculata_contig4921:3561..43681691481299.0371623-CDS-H-paniculata_contig4921:3561..4368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 3562..4368 -
1622930454.5690532-CDS-H-paniculata_contig4921:5533..56801622930454.5690532-CDS-H-paniculata_contig4921:5533..5680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 5534..5680 -
1691481299.0461304-CDS-H-paniculata_contig4921:5533..56801691481299.0461304-CDS-H-paniculata_contig4921:5533..5680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4921 5534..5680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4921.12097.1prot_H-paniculata_contig4921.12097.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4921 3562..5680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4921.12097.1

>prot_H-paniculata_contig4921.12097.1 ID=prot_H-paniculata_contig4921.12097.1|Name=mRNA_H-paniculata_contig4921.12097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
GDPGDFLDPHQHQPTGGGARFSVAQPLVAELRNGGVDLHVAGVSSTLDEE
FQKPVSPPPHSSPHRDHHSMDVLHHHHQHGTPPTSGTVNNNGNDDSGLGG
EIQRELSWGGVEGAMAAAAALDGDAPSSSSSTSHHPHHQLHPHHHHHDSH
EMLLCLRDDGSRKGYHSNPNLTSTLLSAEAMEAATVAHGGGGDEGRCRSL
GHQSGGGRDSNSSAGGVDGVMIGLLQQQQQQLHEVRKWENEKYGHGEEQA
PAGVRTALLAGDASAAGNHAMMTGQFRGAQGGGNDDDDADDGNGDDADDE
SDGDDRKASATILRSGSG
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mRNA from alignment at H-paniculata_contig4921:3562..5680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4921.12097.1 ID=mRNA_H-paniculata_contig4921.12097.1|Name=mRNA_H-paniculata_contig4921.12097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2119bp|location=Sequence derived from alignment at H-paniculata_contig4921:3562..5680- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGACCCCGGGGATTTCCTTGACCCTCACCAACACCAGCCGACGGGAGG
GGGGGCTAGATTCTCCGTAGCGCAGCCGCTAGTGGCGGAGCTGCGTAATG
GAGGCGTCGATCTTCACGTAGCTGGTGTGTCTTCGACTCTCGATGAGGTG
AGGAAGTGACAGGAGAGACCGGCGTATTTTTCGCGGTTGAAGGCTTCAGC
GAAGACAGACCCTATCAAGACCTCATGCTATGTACTACGTATGTATATAA
GTAGTGGAGTATGACCGTGGCTAGGCTACACCCGACACCCGTACAGTGTG
TACTACTTGTCCTCGACTCACGGACTCGCTGCGCTCGCGTGCAGGTTTGT
TGTTGTGGAGTTCTTGAGTGCAGATTTGAAAAGCTCTTCTGAAACAAGGA
TGACGATCTTGCCATTTTAAATAAGAAGTATAATAATTCTTTGTTGGCCG
TGCATTGAGTTTGGCTGGTGGAGTGTAGGTGTGCGCTGCGTCAGCGGCGG
CCATGTTGTAGGTACCGGTATAGTGCAATTTTTGCCCGATAGGTGGCTAA
AAATTGGTTTCGGAACCATGATGTCCAAACCTGACGAACATATGAGCTCG
TTGGTTACCTATCTACCGGGGAACGCACGTTTACCCGAGATGACAGCAAG
TCACGCTCGAAAGTGTAACCGTTGTGGGGTTTTATTGTCTTTTTGTACCC
GTACCCCAGTATGCTCGTCTGGCCATGGCAAATCGAACACATTGAGTGTG
AAGATAGATGACTTTGGTGCTGATGAAAGAGTTGTTCCGTCTAATGCTCA
AATGACCAGTACAGTTCGAGACGGGGGAAGCTGTGATCCTCATTCATGGT
TGAGTGCTTTATATATTTGCTTAACCTGTACCGTACGATGGCTCCAATAG
AAAGGTTCCCGAAGTAGTCGCGCTGAAAGGATTAACTCACGGATGTCCGC
CACCAGGGTTTCGCTATGAGTAGCACCAGCTGTCCAGGATCTGTGCTCTC
CTTGTCTCTATCTTGCGCACGCTTCCTTTCTATGCCTCATCTCTTGTAGA
CTTCATATGTAGGGTAAAGCGCGACACGAAGGATTTCAATGATCATGAAA
CACAGAACAGTACCGCAGAGTTTAGCTAGCAATGCTGAGCGAAAGAAAAC
AAATAATTAAAATTGTTGGCTGAGAATAGGTTGTACCATCTTTTACTCGA
TACAACACATCTAATTTACTCCCTAACTCCTTTCCGTCCTCTGGATGATG
CATGTGGTCTAATAACTACGCCCCCACACCCCCTCTCCCCGGGGTTTCCT
CGTTTTGTTCAGGAATTTCAAAAGCCGGTGTCTCCACCTCCTCACTCTAG
CCCTCATCGCGACCATCATAGCATGGATGTCCTTCACCACCACCACCAAC
ACGGTACCCCTCCTACTAGTGGGACTGTCAACAACAATGGCAACGATGAT
AGTGGACTTGGCGGCGAAATCCAACGTGAACTCTCTTGGGGAGGCGTCGA
GGGCGCGATGGCAGCGGCTGCCGCCCTCGACGGCGACGCTCCCAGCAGCA
GCAGTAGCACGTCCCACCACCCTCACCACCAACTCCATCCCCACCATCAT
CACCACGACTCTCACGAGATGCTCCTGTGCCTGCGTGACGACGGGAGCCG
TAAGGGTTATCACTCCAACCCCAACCTCACCTCTACGCTCCTGTCGGCGG
AGGCAATGGAGGCCGCAACGGTGGCTCATGGTGGTGGAGGCGACGAGGGG
AGGTGCCGGTCGCTGGGACACCAGAGCGGCGGTGGGCGGGATAGTAATAG
TAGTGCGGGAGGGGTTGACGGGGTGATGATTGGCTTGCTGCAGCAGCAGC
AGCAGCAGCTGCATGAGGTTCGGAAATGGGAGAACGAAAAGTACGGCCAT
GGTGAGGAGCAGGCGCCGGCAGGGGTGCGGACAGCGCTGCTTGCAGGAGA
TGCATCTGCTGCGGGAAACCATGCCATGATGACTGGTCAATTTCGCGGTG
CTCAAGGAGGCGGCAATGATGATGATGACGCTGATGATGGTAATGGTGAT
GACGCTGATGATGAAAGCGATGGTGATGATCGTAAGGCCAGCGCTACTAT
TTTAAGAAGCGGGTCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4921:3562..5680-

>mRNA_H-paniculata_contig4921.12097.1 ID=mRNA_H-paniculata_contig4921.12097.1|Name=mRNA_H-paniculata_contig4921.12097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig4921:3562..5680- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGACCCCGGGGATTTCCTTGACCCTCACCAACACCAGCCGACGGGAGG
GGGGGCTAGATTCTCCGTAGCGCAGCCGCTAGTGGCGGAGCTGCGTAATG
GAGGCGTCGATCTTCACGTAGCTGGTGTGTCTTCGACTCTCGATGAGGGG
GACCCCGGGGATTTCCTTGACCCTCACCAACACCAGCCGACGGGAGGGGG
GGCTAGATTCTCCGTAGCGCAGCCGCTAGTGGCGGAGCTGCGTAATGGAG
GCGTCGATCTTCACGTAGCTGGTGTGTCTTCGACTCTCGATGAGGAATTT
CAAAAGCCGGTGTCTCCACCTCCTCACTCTAGCCCTCATCGCGACCATCA
TAGCATGGATGTCCTTCACCACCACCACCAACACGGTACCCCTCCTACTA
GTGGGACTGTCAACAACAATGGCAACGATGATAGTGGACTTGGCGGCGAA
ATCCAACGTGAACTCTCTTGGGGAGGCGTCGAGGGCGCGATGGCAGCGGC
TGCCGCCCTCGACGGCGACGCTCCCAGCAGCAGCAGTAGCACGTCCCACC
ACCCTCACCACCAACTCCATCCCCACCATCATCACCACGACTCTCACGAG
ATGCTCCTGTGCCTGCGTGACGACGGGAGCCGTAAGGGTTATCACTCCAA
CCCCAACCTCACCTCTACGCTCCTGTCGGCGGAGGCAATGGAGGCCGCAA
CGGTGGCTCATGGTGGTGGAGGCGACGAGGGGAGGTGCCGGTCGCTGGGA
CACCAGAGCGGCGGTGGGCGGGATAGTAATAGTAGTGCGGGAGGGGTTGA
CGGGGTGATGATTGGCTTGCTGCAGCAGCAGCAGCAGCAGCTGCATGAGG
TTCGGAAATGGGAGAACGAAAAGTACGGCCATGGTGAGGAGCAGGCGCCG
GCAGGGGTGCGGACAGCGCTGCTTGCAGGAGATGCATCTGCTGCGGGAAA
CCATGCCATGATGACTGGTCAATTTCGCGGTGCTCAAGGAGGCGGCAATG
ATGATGATGACGCTGATGATGGTAATGGTGATGACGCTGATGATGAAAGC
GATGGTGATGATCGTAAGGCCAGCGCTACTATTTTAAGAAGCGGGTCGGG
GGAATTTCAAAAGCCGGTGTCTCCACCTCCTCACTCTAGCCCTCATCGCG
ACCATCATAGCATGGATGTCCTTCACCACCACCACCAACACGGTACCCCT
CCTACTAGTGGGACTGTCAACAACAATGGCAACGATGATAGTGGACTTGG
CGGCGAAATCCAACGTGAACTCTCTTGGGGAGGCGTCGAGGGCGCGATGG
CAGCGGCTGCCGCCCTCGACGGCGACGCTCCCAGCAGCAGCAGTAGCACG
TCCCACCACCCTCACCACCAACTCCATCCCCACCATCATCACCACGACTC
TCACGAGATGCTCCTGTGCCTGCGTGACGACGGGAGCCGTAAGGGTTATC
ACTCCAACCCCAACCTCACCTCTACGCTCCTGTCGGCGGAGGCAATGGAG
GCCGCAACGGTGGCTCATGGTGGTGGAGGCGACGAGGGGAGGTGCCGGTC
GCTGGGACACCAGAGCGGCGGTGGGCGGGATAGTAATAGTAGTGCGGGAG
GGGTTGACGGGGTGATGATTGGCTTGCTGCAGCAGCAGCAGCAGCAGCTG
CATGAGGTTCGGAAATGGGAGAACGAAAAGTACGGCCATGGTGAGGAGCA
GGCGCCGGCAGGGGTGCGGACAGCGCTGCTTGCAGGAGATGCATCTGCTG
CGGGAAACCATGCCATGATGACTGGTCAATTTCGCGGTGCTCAAGGAGGC
GGCAATGATGATGATGACGCTGATGATGGTAATGGTGATGACGCTGATGA
TGAAAGCGATGGTGATGATCGTAAGGCCAGCGCTACTATTTTAAGAAGCG
GGTCGGGG
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