mRNA_H-paniculata_contig49191.12092.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A8F0F724_9PHAE (Ribosomal protein L19 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F724_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.020e-63 Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = 1
Query: 4 NNMNS-KITLEKDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRFIK 399
NN+N K+ + +K+DFI S+EKLYLK QVS +QIGDLVKIGV IKEGNKDRIQYYQGLI+GKN GINLTITVRKVFQGIGVERKFLIHSPKFESI+ILKSSRVRRSKLYYLR FSEK SRLKPRF+K
Sbjct: 41 NNINGYKVHTKNSKEKHKSDFISSIEKLYLKNQVSKIQIGDLVKIGVYIKEGNKDRIQYYQGLIIGKNNAGINLTITVRKVFQGIGVERKFLIHSPKFESIEILKSSRVRRSKLYYLRKFSEKGSRLKPRFVK 173
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A2I4Q2C7_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C7_9PHAE) HSP 1 Score: 164 bits (415), Expect = 7.730e-50 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
Query: 34 KDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRFI 396
K + N I SVEKLY K + ++ +GD VKIG+SIKEGNKDRIQYYQG+++ K TGINL I VRK FQGIGVER+FL+HSPKF+S+Q+LKS+R+RRSKLYYLRN S K SRLK +FI
Sbjct: 9 KQFSKNYKTLIDSVEKLYCKNDIKMVLVGDTVKIGISIKEGNKDRIQYYQGIVISKKNTGINLKIVVRKTFQGIGVERQFLLHSPKFQSVQVLKSARIRRSKLYYLRNISGKASRLKQKFI 129
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI) HSP 1 Score: 160 bits (405), Expect = 2.270e-48 Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 1
Query: 49 NKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRF 393
N + I SVE +++K+ +S + +GD VKIGV IKEGNK+RIQYYQG+ILGKN +GINLTI+VRKVFQGIGVER FLIHSPKFESI+++KSSRVRRSKLYYLR+ K SRLK RF
Sbjct: 11 NDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRF 125
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE) HSP 1 Score: 160 bits (405), Expect = 2.410e-48 Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 1
Query: 73 VEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRF 393
VE Y+K+ VS + +GD VKIGV IKEGNK+RIQYYQG+ILGKN +G+NLTI+VRKVFQGIGVER+FLIHSPKFESI+I+KSSRVRRSKLYYLR+ K SRLK RF
Sbjct: 21 VESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRF 127
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.390e-47 Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 1
Query: 70 SVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRF 393
SVE Y K+ +S + +GD +K+GV IKEGNK+R+QYYQG+ILGKN +GINLTI+VRKVFQGIGVERKFL+HSPK ESI+++KSSRVRRSKLYYLRN K SRLK RF
Sbjct: 20 SVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLRNIIGKGSRLKQRF 127
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A6B9TNS0_SARFS (50S ribosomal protein L19, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TNS0_SARFS) HSP 1 Score: 150 bits (380), Expect = 1.630e-44 Identity = 81/130 (62.31%), Postives = 101/130 (77.69%), Query Frame = 1
Query: 7 NMNSKITLEKDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSE-KESRLKPRF 393
N+N K EK +K + VE+ Y+K+ + + +GD VKIGV IKEGNK+RIQYYQG+IL K +GINLTI+VRK+FQGIG+ERKFLIHSPKFES+Q++KS+RVRRSKLYYLR + K SRLK RF
Sbjct: 3 NLNLK---EKVLYLSKKKILALVEQTYIKKSIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILSKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESLQVIKSARVRRSKLYYLRKTTTTKGSRLKQRF 129
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE) HSP 1 Score: 150 bits (379), Expect = 2.180e-44 Identity = 78/115 (67.83%), Postives = 91/115 (79.13%), Query Frame = 1
Query: 49 NKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRF 393
N I VE+ K+ + + +GD VKIG+ IKEGNK+RIQYYQG+ILGK +GINL I+VRKVFQGIGVER FLIHSPKFESI ++KSSRVRRSKLYYLRN K+SRLK RF
Sbjct: 13 NSEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERF 127
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE) HSP 1 Score: 150 bits (379), Expect = 2.460e-44 Identity = 82/132 (62.12%), Postives = 102/132 (77.27%), Query Frame = 1
Query: 1 NNNMNSKITLEKDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSE-KESRLKPRF 393
N N+N K EK +K + VE+ Y+K+ + + +GD VKIGV IKEGNK+RIQYYQG+IL K +GINLTI+VRK+FQGIG+ERKFLIHSPKFES++I+KS+RVRRSKLYYLR + K SRLK RF
Sbjct: 3 NLNLNLK---EKVLSLSKKKILALVEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRF 131
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A2R4QPR9_9PHAE (50S ribosomal protein L19 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPR9_9PHAE) HSP 1 Score: 146 bits (369), Expect = 7.210e-43 Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 1
Query: 73 VEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSE-KESRLKPRF 393
VE+ Y K+ + + +GD VKIGV IKEGNK+R+QYYQG+IL K +GINLTI VRKVFQGIGVERKFLIHSPKFESI+I+KS+RVRRSKLYYLR + K SRLK RF
Sbjct: 20 VEENYKKKNTANLFVGDTVKIGVLIKEGNKERVQYYQGIILAKKNSGINLTIYVRKVFQGIGVERKFLIHSPKFESIEIIKSARVRRSKLYYLRKITTTKGSRLKQRF 127
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE) HSP 1 Score: 143 bits (360), Expect = 2.150e-41 Identity = 72/122 (59.02%), Postives = 99/122 (81.15%), Query Frame = 1
Query: 34 KDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNKDRIQYYQGLILGKNGTGINLTITVRKVFQGIGVERKFLIHSPKFESIQILKSSRVRRSKLYYLRNFSEKESRLKPRFIK 399
K +I+N+ FI SVEK+++K+ + + +GD VK+GV ++EGNK+R+Q+Y+G+IL K+ + IN TI+VRKVFQGIGVER FL++SPKF SI+++KSSR+RRSKLYYLRN K RLK RF K
Sbjct: 18 KIFINNR--FIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLRNIIGKAGRLKERFKK 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49191.12092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig49191.12092.1 >prot_H-paniculata_contig49191.12092.1 ID=prot_H-paniculata_contig49191.12092.1|Name=mRNA_H-paniculata_contig49191.12092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp MNSKITLEKDYISNKADFILSVEKLYLKEQVSLMQIGDLVKIGVSIKEGNback to top mRNA from alignment at H-paniculata_contig49191:360..761- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig49191.12092.1 ID=mRNA_H-paniculata_contig49191.12092.1|Name=mRNA_H-paniculata_contig49191.12092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at H-paniculata_contig49191:360..761- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig49191:360..761- >mRNA_H-paniculata_contig49191.12092.1 ID=mRNA_H-paniculata_contig49191.12092.1|Name=mRNA_H-paniculata_contig49191.12092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig49191:360..761- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |