mRNA_H-paniculata_contig11891.1209.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11891.1209.1
Unique NamemRNA_H-paniculata_contig11891.1209.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A6H5JU39_9PHAE (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU39_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 2.060e-87
Identity = 143/210 (68.10%), Postives = 173/210 (82.38%), Query Frame = 2
Query:  218 EDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847
            E E   Y+A++Y+A HTM VL ELF EAR+ M+WL  VA LVAKEGQP++W+TPLGLPV+QPYRR+  +QVQTLLQGV + E++++LPVA+ RQ +AFPPNFVHSLDSTHM++TA+EMDK  VPFAAVHDSYWVHAGN+D MN KLRQ             CFVDLYSGPILEDL +S+R+RYPTI+FPPIP+RGTL L++VKDSKYFFN
Sbjct:  969 EVEETVYKASAYVAKHTMKVLEELFTEARNTMDWLKAVAQLVAKEGQPMSWITPLGLPVLQPYRRNDTYQVQTLLQGVHIREDSDNLPVAVKRQTTAFPPNFVHSLDSTHMMMTAIEMDKVGVPFAAVHDSYWVHAGNVDVMNDKLRQ-------------CFVDLYSGPILEDLQDSLRMRYPTIDFPPIPERGTLVLDSVKDSKYFFN 1165          
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A7S3Y5S7_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5S7_HETAK)

HSP 1 Score: 235 bits (600), Expect = 4.630e-69
Identity = 118/217 (54.38%), Postives = 153/217 (70.51%), Query Frame = 2
Query:  200 NQVMMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEG--QPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFF 844
             +V+  E+E D  RA+ +LA  TM  +GE+F EAR IM+WL + A LVA  G   PV WVTPLGLPV+QPYR++T + VQTL+Q +QL   ++ LPVA  RQ+SAFPPNFVHSLDSTHM++TAV+M +A + FAAVHDSYW HA ++D MN  LR+              FV+LY  P+LE L++S+R R+P + FPP+P RG LDL +V DS YFF
Sbjct:  188 KKVLTAEEEQDITRASQFLATLTMECIGEVFKEARRIMDWLADCAALVAGTGCGAPVAWVTPLGLPVVQPYRKNTRYVVQTLVQYLQLARSDDALPVAAQRQRSAFPPNFVHSLDSTHMMMTAVKMHEAGLDFAAVHDSYWTHAADVDTMNRLLRE-------------SFVELYQQPVLERLYDSLRKRHPGLAFPPVPPRGALDLASVLDSPYFF 391          
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A7S0GL68_9STRA (DNA-directed RNA polymerase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GL68_9STRA)

HSP 1 Score: 233 bits (595), Expect = 3.330e-67
Identity = 111/208 (53.37%), Postives = 142/208 (68.27%), Query Frame = 2
Query:  224 EADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847
            + + + A+ YLA  TM V+GELF  AR  M WL   A L++ EGQPV W+TP+G+PV+QPYR+   F V T+ Q ++L   ++HLP+   RQ SAFPPN+VHSLDS HM+LTA+EM+K  + F AVHDS+W HAGNID+MN  LR               FVDLY G +LEDL ES +LRYP IE P +P+RG LD++ VKDS YFF 
Sbjct:  296 DREIHLASGYLAKITMEVIGELFSGARQTMNWLTTCARLLSAEGQPVAWITPIGIPVVQPYRQKKAFSVVTMFQSIRLVTRSDHLPIHKGRQASAFPPNYVHSLDSAHMMLTALEMEKRNLDFTAVHDSFWTHAGNIDEMNEILRD-------------SFVDLYDGDVLEDLRESWKLRYPDIELPDLPERGDLDIKDVKDSTYFFQ 490          
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A4D9D3J6_9STRA (DNA-directed RNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J6_9STRA)

HSP 1 Score: 243 bits (620), Expect = 7.790e-67
Identity = 118/216 (54.63%), Postives = 151/216 (69.91%), Query Frame = 2
Query:  200 NQVMMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847
             +++  E+E + Y A+ Y+A  T+  L ELF  AR+IMEWL   A LVA++GQP++WVTPLGLPV+QPYRR  G  V+TL+Q V L + N+ LPV+ +RQ+SAFPPNFVHSLDSTHML+TA  +    VPF AVHDSYW HA N++ MNA LR+             CF+ LY  P+LE L +S+  R+P + FPPIPQRG L LE VKDS YFF+
Sbjct:  904 GRMLTKEEEQEVYEASRYVATVTLSKLAELFSAARNIMEWLSTCASLVARQGQPMSWVTPLGLPVIQPYRRDKGLLVKTLIQSVILVDCNDKLPVSSSRQRSAFPPNFVHSLDSTHMLMTANRLQGLGVPFTAVHDSYWCHASNVEVMNATLRE-------------CFITLYEQPVLEALRDSLVARFPDVAFPPIPQRGKLRLEEVKDSPYFFD 1106          
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A836CEF2_9STRA (DNA-directed RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF2_9STRA)

HSP 1 Score: 241 bits (616), Expect = 2.220e-66
Identity = 120/203 (59.11%), Postives = 147/203 (72.41%), Query Frame = 2
Query:  245 ASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEH--LPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847
            A+YLA+ TMG L  LF EAR+IM+WL  +A +VA++GQP+ WVTPLGLPV+QPYRR   F ++TLLQ V L+   +   LPV  ARQ+SAFPPNFVHSLDSTHML+TA  MD   +PFAAVHDSYW HAG++D MNA LR               FV+LYS PILEDLH S+  R+P ++FP +P RG LD+ AV+DS YFFN
Sbjct:  882 ANYLASLTMGALSGLFSEARAIMDWLATLARIVAQQGQPMAWVTPLGLPVVQPYRRGGDFTIKTLLQSVTLSGAGDDAALPVEAARQRSAFPPNFVHSLDSTHMLMTAAAMDARGIPFAAVHDSYWCHAGHVDVMNAALRDT-------------FVELYSRPILEDLHASLTARFPDVKFPRVPPRGALDVGAVRDSAYFFN 1071          
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A7S2EID2_9STRA (DNA-directed RNA polymerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EID2_9STRA)

HSP 1 Score: 224 bits (570), Expect = 7.090e-65
Identity = 108/212 (50.94%), Postives = 145/212 (68.40%), Query Frame = 2
Query:  212 MDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847
            +DE E +   A  YLA  TM V+G LF  AR  M+WL   A L++++GQPV W++P+G+P +QPYR++  + + TL+Q V LT  +E+LP+  +RQ SAFPPN+VHSLDS+HMLLTA+EMD+  + F+AVHDS+W HA +ID+MN  LR              CFVDLY  P+LE+L  +  LRYPT+ FP IP+RG LDL  VK + YFF 
Sbjct:  174 VDEIEPEINAACGYLATMTMDVMGTLFTGARQTMDWLATCARLISQQGQPVAWLSPIGVPAVQPYRQNKPYTIYTLVQKVVLTNSSENLPIHKSRQVSAFPPNYVHSLDSSHMLLTALEMDRRGLTFSAVHDSFWTHACDIDEMNGVLRD-------------CFVDLYDQPLLEELKRTWELRYPTLNFPDIPERGDLDLNEVKKAPYFFQ 372          
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A7S2NXW4_9STRA (DNA-directed RNA polymerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXW4_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.640e-63
Identity = 106/212 (50.00%), Postives = 145/212 (68.40%), Query Frame = 2
Query:  212 MDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847
            +DE E + Y A+SYLA+ TM V+G+LF  AR    WL + A L++  G PV W+TPLG+P +QPYR      V+T+LQ V L   ++ LP+  +RQ SAFPPN+VHSLD+THML+T +EMD+  + F AVHDS+W HA +ID+MN+ LR              CFVDLYS P+LE+L ++  LRYP +EFPP+P++G +DL +V +S YFF 
Sbjct:  254 VDEMEEEIYSASSYLASVTMEVMGDLFTGARQTQNWLTDCARLISSRGHPVAWLTPLGVPAVQPYRHKKLHTVRTILQRVSLALSDDDLPLHKSRQVSAFPPNYVHSLDATHMLMTGMEMDRRGLTFTAVHDSFWTHAADIDEMNSVLRS-------------CFVDLYSQPLLEELKKTWELRYPDLEFPPVPKKGEMDLRSVLNSSYFFQ 452          
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: F0XZ85_AURAN (DNA-directed RNA polymerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ85_AURAN)

HSP 1 Score: 231 bits (590), Expect = 2.160e-63
Identity = 115/211 (54.50%), Postives = 143/211 (67.77%), Query Frame = 2
Query:  215 DEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847
            D DEA+ Y  A Y+A  T+ VL ELF  AR IM WL + A LV+  GQPV+W+TPLGLPV+QPYRR     V+TL Q V L + ++ LPV++ RQKSAFPPNFVHSLDS+HML+TAVEMD   + F AVHDSYW HA ++  MN+ LR              CF++LY  P+LE L ES  LRYP  +FPP+P RG LD+  V D+ YFF+
Sbjct:  705 DVDEAELYLCACYVARLTLEVLEELFTSARHIMGWLAQCARLVSLHGQPVSWITPLGLPVVQPYRRDGQHAVKTLAQTVLLVDNSDKLPVSVTRQKSAFPPNFVHSLDSSHMLMTAVEMDHRGLAFTAVHDSYWTHAADVATMNSTLRH-------------CFLELYEAPLLEKLLESFELRYPDTDFPPLPPRGDLDIAKVLDADYFFS 902          
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A2P4Y1A0_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y1A0_9STRA)

HSP 1 Score: 217 bits (553), Expect = 2.770e-63
Identity = 113/224 (50.45%), Postives = 149/224 (66.52%), Query Frame = 2
Query:  179 HACGIAVNQVMMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVE-MDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847
            H   +    +M ++ E + YRA+ Y A  TMG +G+LF  AR IM WL + A  V + GQP++W+TPLGLPV+QPYR+    QV+T +Q V L  ENE   V+I RQKSAFPPNFVHSLDSTHM+LTA   +++  + FAAVHDSYW HA ++D MN +LR+              FV+LY  P+LEDL + +RLR+P ++F  +PQ G LDL +V DS YFFN
Sbjct:   90 HETFLTKGHIMDEKLEDEIYRASCYCAEITMGSMGDLFNSARGIMGWLAKCAAKVGESGQPMSWITPLGLPVVQPYRKKGTKQVRTKVQHV-LMVENEGRDVSIGRQKSAFPPNFVHSLDSTHMMLTARRCLEEDNIAFAAVHDSYWTHACSVDIMNRRLREE-------------FVNLYEQPLLEDLLDELRLRFPDMKFDDVPQLGDLDLRSVLDSPYFFN 299          
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: M4BTL4_HYAAE (DNA-directed RNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTL4_HYAAE)

HSP 1 Score: 213 bits (541), Expect = 7.490e-63
Identity = 113/214 (52.80%), Postives = 141/214 (65.89%), Query Frame = 2
Query:  209 MMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVE-MDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847
            M D+ E D Y AA Y A  TMG +G+LF  AR IM WL + A    + GQP++W+TPLGLPV+QPYR  +  QV+T +Q V L  ENE   V+I RQKSAFPPNFVHSLDSTHM+LTA   ++   + FAAVHDSYW HA ++D MN +LR+              FV+LY  P+LEDL   +RLR+P + F  +P+ GTLDL  V DS YFFN
Sbjct:    1 MDDQLEDDIYHAACYCAELTMGSMGDLFTSARGIMGWLAKCAAQAGESGQPMSWITPLGLPVVQPYRSKSTKQVRTKVQHV-LMVENEGRQVSIGRQKSAFPPNFVHSLDSTHMMLTARRCLEDDEISFAAVHDSYWTHACSVDTMNRRLREE-------------FVNLYEQPLLEDLLTELRLRFPDMTFDDVPRLGTLDLRNVLDSPYFFN 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU39_9PHAE2.060e-8768.10DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
A0A7S3Y5S7_HETAK4.630e-6954.38DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A7S0GL68_9STRA3.330e-6753.37DNA-directed RNA polymerase n=1 Tax=Proboscia iner... [more]
A0A4D9D3J6_9STRA7.790e-6754.63DNA-directed RNA polymerase n=2 Tax=Monodopsidacea... [more]
A0A836CEF2_9STRA2.220e-6659.11DNA-directed RNA polymerase n=1 Tax=Tribonema minu... [more]
A0A7S2EID2_9STRA7.090e-6550.94DNA-directed RNA polymerase n=1 Tax=Ditylum bright... [more]
A0A7S2NXW4_9STRA1.640e-6350.00DNA-directed RNA polymerase n=1 Tax=Leptocylindrus... [more]
F0XZ85_AURAN2.160e-6354.50DNA-directed RNA polymerase n=1 Tax=Aureococcus an... [more]
A0A2P4Y1A0_9STRA2.770e-6350.45DNA-directed RNA polymerase (Fragment) n=1 Tax=Phy... [more]
M4BTL4_HYAAE7.490e-6352.80DNA-directed RNA polymerase n=1 Tax=Hyaloperonospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11891contigH-paniculata_contig11891:5020..7652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.0
Seed ortholog evalue2.2e-79
Seed eggNOG ortholog2880.D7FQU5
Preferred namerpom-1
KEGG koko:K00960,ko:K10908,ko:K11446
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000959,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034245,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098798,GO:0140053,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.dna-directed rna polymerase
EggNOG OGsCOG5108@1,KOG1038@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03029,ko03036
Exons4
Model size1523
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11891.1209.1prot_H-paniculata_contig11891.1209.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11891 5693..7444 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.5125947-UTR-H-paniculata_contig11891:5019..56921622928900.5125947-UTR-H-paniculata_contig11891:5019..5692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11891 5020..5692 -
1691480661.6324003-UTR-H-paniculata_contig11891:5019..56921691480661.6324003-UTR-H-paniculata_contig11891:5019..5692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11891 5020..5692 -
1622928900.6076477-UTR-H-paniculata_contig11891:7444..76521622928900.6076477-UTR-H-paniculata_contig11891:7444..7652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11891 7445..7652 -
1691480661.681845-UTR-H-paniculata_contig11891:7444..76521691480661.681845-UTR-H-paniculata_contig11891:7444..7652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11891 7445..7652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.533094-CDS-H-paniculata_contig11891:5692..58811622928900.533094-CDS-H-paniculata_contig11891:5692..5881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11891 5693..5881 -
1691480661.6443014-CDS-H-paniculata_contig11891:5692..58811691480661.6443014-CDS-H-paniculata_contig11891:5692..5881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11891 5693..5881 -
1622928900.565709-CDS-H-paniculata_contig11891:6215..64491622928900.565709-CDS-H-paniculata_contig11891:6215..6449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11891 6216..6449 -
1691480661.6531026-CDS-H-paniculata_contig11891:6215..64491691480661.6531026-CDS-H-paniculata_contig11891:6215..6449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11891 6216..6449 -
1622928900.5803735-CDS-H-paniculata_contig11891:6913..70371622928900.5803735-CDS-H-paniculata_contig11891:6913..7037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11891 6914..7037 -
1691480661.662668-CDS-H-paniculata_contig11891:6913..70371691480661.662668-CDS-H-paniculata_contig11891:6913..7037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11891 6914..7037 -
1622928900.5921664-CDS-H-paniculata_contig11891:7349..74441622928900.5921664-CDS-H-paniculata_contig11891:7349..7444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11891 7350..7444 -
1691480661.6721272-CDS-H-paniculata_contig11891:7349..74441691480661.6721272-CDS-H-paniculata_contig11891:7349..7444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11891 7350..7444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11891.1209.1

>prot_H-paniculata_contig11891.1209.1 ID=prot_H-paniculata_contig11891.1209.1|Name=mRNA_H-paniculata_contig11891.1209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=214bp
MMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQ
PVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSA
FPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLR
QLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTL
DLEAVKDSKYFFN*
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mRNA from alignment at H-paniculata_contig11891:5020..7652-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11891.1209.1 ID=mRNA_H-paniculata_contig11891.1209.1|Name=mRNA_H-paniculata_contig11891.1209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2633bp|location=Sequence derived from alignment at H-paniculata_contig11891:5020..7652- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTACTCTTGGCCTCACCCCCATCAACCTGGGGTTTACCCCGGGGTGAG TTGGGTTAGGTTTAGGGTTAGGGGTTAACCCCGGGGTGAGTTGATCCCGT CCGCCACGTCCAGGTGGGAACGATTCGGACGGGAGAATCGCTCATGTTTG TTGAAGCTTCTGGCGCTGCTGGCTCTCCCATGCTTGCGGTATTGCGGTAA ATCAGGTGATGATGGACGAGGACGAGGCAGATGCCTACAGAGCGGCTTCC TACCTCGCAGCACACACAATGGGCGTTCTTGGGGAGCTGTTTGGGGAGGC TAGGTGATCTTAATAGTGGAGTGGTAGATTTTTTACAGCAGCGGAGAGCG AGAAGTTATGTTTGACCAGTATCGCTGTAGCTCCAGTTCCTACTTTACAG AACTGGAGCTCGTGACAGCAGATAATCACGAGAGACTCGCGAGGCAATCA ATGTACGCGTCTACAAATCGCTATTTTTTATTTTCTGCGCGTGAAGACTG TTCAAGGCCTGTCTTTGGCATACATTGAGGCGGACGTGTATTCCTATATG TTTCGTGGAAGAGTTGTGCCGTGCTCGTTGTGCTAACGTTTCATGCTGCG GGAACTTGTTGACAGGAGTATCATGGAGTGGTTGATGGAGGTGGCGGTGT TGGTGGCAAAGGAGGGCCAACCTGTCACCTGGGTCACTCCGCTCGGTCTT CCGGTGATGCAGCCATATCGCCGGTCGACCGGTTTCCAGGTAACACGAAC ATTAACATTCAAGGTTCCGATACCATTCGATAGACGCGGCGACTAAGTGT GTGAGCCATTCCTTGCAACACGAACCCAACGTTCATCATGCATGACCATG TTGTGGTGCAACAGGATCTACCTCATGGCGGCTTGTACTTTGCGCTACAG GGTGCAATGCATGGTTTATAAGTTACAAAAGCAATTTTGGAGGTCCACCA ATATTTTAAGCGATGACTATACTAATTGTGTTTTTGCTAAGCGGCTCCCA CCGAGATTGTTATTTTGTTGAAGCATAACTCGCTCGATACAAAATTGGTC CTCTAGTGATCCGCTATGGAAGTATTTTCTTGCACAGACGAGGAGTCGAA CGCATCTTTACACCCGTATTGAGCGGGACATGAGCTCGCCTGTTGGCTCC TGCTCAAAATAGAAACATTTTTCTCTAACCCCATCCTCGTCGTATGTGTG CAGGTGCAAACATTACTCCAAGGGGTTCAGCTCACGGAAGAAAACGAACA TCTGCCCGTGGCGATTGCCCGGCAGAAGTCGGCGTTTCCACCTAACTTCG TCCATTCGCTGGATTCCACTCACATGCTCCTTACGGCCGTAGAGATGGAC AAGGCGCGCGTGCCTTTTGCTGCAGTGCACGACAGCTACTGGGTGCACGC GGGGAACATAGACGATATGAACGCTAAGTTACGGCAGGTAAGCGAAACAA AAATTTTAGTGTTGTGTTCCTTCCTCATGCCTTCGCTAGGCCAGTTTCCG TTTGTATTTTTTGGGGGGAGGGGCTTGACTGACGCTCTCTGCTTTTTGAA TAGGGTGTAGTTTCGACTGTAACATGGGCAGACAGGTCTATTTTTCATTA TGTTTCTGTTTCGCCGTCAGCATAGGTTGGCACCATGTAGAGTTGGAGAG CTCCGTCGAATGCTGAATCTGTTTTTTGTCAGCAGATCCTACAGTGGGAG GATTGATCCCTTGCGGCGTTTTGCGGCAACACACCTCTCCCGCTCCATTT ATCTGCTCCGCACGCCCTCAGCTTATCTTTGGTTACTTCCGGCGCATTCC GTACACGCAGTGCTTTGTGGACCTGTACTCGGGCCCAATTCTAGAGGACC TGCACGAATCCATCAGACTGCGCTACCCAACTATCGAGTTCCCGCCAATC CCGCAGAGAGGCACGCTCGACCTCGAGGCCGTCAAGGATAGCAAGTACTT CTTCAACTAAGTGTAGATTGTTGCTTGGAGAGTGTGGTGATGAGCTGTAA CGTAAAGATGTGAAATAATATTTAAACGGGAAGATGTACGAGTGGTCACC ATATGTTACTCTCCTGATCTTCCTCGGCATATTCTCCTGTTGGCATTCGG CCGGATGCTTCGAGATTATATGTCAGCGTGGCCAACGCACCTTCTAATGC TGCCTTCATGTTCTGTACGGTGTTGGCCAGTACTAACTTAAATAGGTTGG TACTAGTTGCTGCTTATCAAGACATCTGGGGCTACGCATTTTTTACGTTG AGCTAATAGTGTGCTATTTGTTGCGAGTGAGCACATCTTGCGAGTAGGGA GAGGTCAGGTCGTCCAAAAAAAAGGAGGAACAATGATCTGTCCGCTCATA AACCATTAGCTCATCGGATGAACATGATATTGATTGTGTAACAGTAGCTA GTATTTGGGTGCATAAGTGTAAAATGTGTCCAAGTGTAGGTGCCGTGTTG TGCGCAGCCGCATATTGTTGGTATGGGAAAAGGGAATGATAATAGTTATT TGGTGATTGACGAATAGTAGGTTAAAATTAATGCCGGTGAAGAAAAAAAA AGGAAAATCGTATTGATCTGATTGATTCGTTTGGATGTAATTTCTTCCTC AGCTGCTGAACAGGACAGAGATACGCTTTTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11891:5020..7652-

>mRNA_H-paniculata_contig11891.1209.1 ID=mRNA_H-paniculata_contig11891.1209.1|Name=mRNA_H-paniculata_contig11891.1209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at H-paniculata_contig11891:5020..7652- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGACGAGGACGAGGCAGATGCCTACAGAGCGGCTTCCTACCTCGC
AGCACACACAATGGGCGTTCTTGGGGAGCTGTTTGGGGAGGCTAGATGAT
GGACGAGGACGAGGCAGATGCCTACAGAGCGGCTTCCTACCTCGCAGCAC
ACACAATGGGCGTTCTTGGGGAGCTGTTTGGGGAGGCTAGGAGTATCATG
GAGTGGTTGATGGAGGTGGCGGTGTTGGTGGCAAAGGAGGGCCAACCTGT
CACCTGGGTCACTCCGCTCGGTCTTCCGGTGATGCAGCCATATCGCCGGT
CGACCGGTTTCCAGGAGTATCATGGAGTGGTTGATGGAGGTGGCGGTGTT
GGTGGCAAAGGAGGGCCAACCTGTCACCTGGGTCACTCCGCTCGGTCTTC
CGGTGATGCAGCCATATCGCCGGTCGACCGGTTTCCAGGTGCAAACATTA
CTCCAAGGGGTTCAGCTCACGGAAGAAAACGAACATCTGCCCGTGGCGAT
TGCCCGGCAGAAGTCGGCGTTTCCACCTAACTTCGTCCATTCGCTGGATT
CCACTCACATGCTCCTTACGGCCGTAGAGATGGACAAGGCGCGCGTGCCT
TTTGCTGCAGTGCACGACAGCTACTGGGTGCACGCGGGGAACATAGACGA
TATGAACGCTAAGTTACGGCAGGTGCAAACATTACTCCAAGGGGTTCAGC
TCACGGAAGAAAACGAACATCTGCCCGTGGCGATTGCCCGGCAGAAGTCG
GCGTTTCCACCTAACTTCGTCCATTCGCTGGATTCCACTCACATGCTCCT
TACGGCCGTAGAGATGGACAAGGCGCGCGTGCCTTTTGCTGCAGTGCACG
ACAGCTACTGGGTGCACGCGGGGAACATAGACGATATGAACGCTAAGTTA
CGGCAGCTTATCTTTGGTTACTTCCGGCGCATTCCGTACACGCAGTGCTT
TGTGGACCTGTACTCGGGCCCAATTCTAGAGGACCTGCACGAATCCATCA
GACTGCGCTACCCAACTATCGAGTTCCCGCCAATCCCGCAGAGAGGCACG
CTCGACCTCGAGGCCGTCAAGGATAGCAAGTACTTCTTCAACTAACTTAT
CTTTGGTTACTTCCGGCGCATTCCGTACACGCAGTGCTTTGTGGACCTGT
ACTCGGGCCCAATTCTAGAGGACCTGCACGAATCCATCAGACTGCGCTAC
CCAACTATCGAGTTCCCGCCAATCCCGCAGAGAGGCACGCTCGACCTCGA
GGCCGTCAAGGATAGCAAGTACTTCTTCAACTAA
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