prot_H-paniculata_contig49133.12087.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig49133.12087.1
Unique Nameprot_H-paniculata_contig49133.12087.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length145
Homology
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.750e-27
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPF-SRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDLKHNISQRFRMKDLGSLPRVLGIEVRRGR 140
            ++T+R V +LA   D EL+ MDVD  Y  + +EE++++KQPP +  + S     V RLRKSLYGLKQS RNW+  +D +  G G   S+TD CL+      GE   + ++   KH IS+ F MKDL  L  +LG+ ++R R
Sbjct:  322 ITTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGE---MEMVNSFKHAISREFSMKDLKELHWILGMAIKRDR 459          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.360e-25
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDV-PFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLED--------------LKHNISQRFRMKDLGSLPRVLGIEVRRGRPN 142
            M+T+R V +LA   D EL+ MDVD  Y  + +EE++++KQPP +  +  +    V RLRKSLYGLKQS RNW+  +D +  G GL  S  D CL+      GE  ++V+  D               K +IS+ F MKDL  L  +LG+ ++R R N
Sbjct:  284 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNREN 440          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.700e-25
Identity = 61/155 (39.35%), Postives = 87/155 (56.13%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPF-SRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLED--------------LKHNISQRFRMKDLGSLPRVLGIEVRRGR 140
            ++T+R V +LA   D EL+ MDV+  Y  + +EE+++VKQPP +  + S     V RLRKSLYGLKQS RNW+  +D +  G G   S+ D CL+      GE  ++V+  D               KH IS+ F MKDL  L  +LG+ ++R R
Sbjct:   64 ITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDR 218          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.350e-24
Identity = 57/155 (36.77%), Postives = 86/155 (55.48%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRD-VPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVV--------------LEDLKHNISQRFRMKDLGSLPRVLGIEVRRGR 140
            ++T+R + ++A   D EL+ MDVD  Y  + +EE+++VKQPP +     +    V RLRKSLYGLKQS RNW+  +D +  G G   S+ D CL+      GE  ++V+              ++D K  IS+   MKDL  L  +LG+ ++R R
Sbjct:   64 ITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNR 218          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 106 bits (265), Expect = 2.910e-24
Identity = 58/155 (37.42%), Postives = 92/155 (59.35%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRD-VPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVL--EDL-------------KHNISQRFRMKDLGSLPRVLGIEVRRG 139
            ++++  +  LAA++D  +  MDV   + +AP++ E+F++QP  F   S + V  V RL+KSLYGLKQS RNWN  LD++L+  G  R+  D C++  + + GE  ++VV+  +DL             K N+  +FRMKDLG +   LGI  ++G
Sbjct:  234 ITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG 386          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A2G8JVM6_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JVM6_STIJA)

HSP 1 Score: 107 bits (266), Expect = 4.080e-24
Identity = 56/148 (37.84%), Postives = 86/148 (58.11%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRD-VPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLV-------------VLEDLKHNISQRFRMKDLGSLPRVLGI 134
            +S++R +  L+ +H+  +  MDV   Y NAP++ EL+V+QP  F+   ++    V RL+KSLYGLKQS RNWN+ L  + VG    +S  D C++   +E   T +LV             +LED+K  ++ RF+MKDLG +   LG+
Sbjct:  719 ISSIRALMQLSIQHNLIVHQMDVKTAYLNAPIDCELYVEQPEGFAVSGKNGEKLVCRLKKSLYGLKQSGRNWNSLLHSYFVGESYSQSLVDPCVYTKHEENDMTIILVWVDDIIITTNRDSILEDVKRGLTSRFKMKDLGEISMFLGM 866          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A2P6P3Z1_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P3Z1_ROSCH)

HSP 1 Score: 106 bits (264), Expect = 4.760e-24
Identity = 57/153 (37.25%), Postives = 88/153 (57.52%), Query Frame = 0
Query:    2 STLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVV--------------LEDLKHNISQRFRMKDLGSLPRVLGIEVRRGR 140
            +++R + S+AA++D E+E MDV   + +  +EE++++ QP  F    ++   V RLRKSLYGLKQS R W    D +++ IG  R   D C+++   E GE  LL++              +E+LK  +   F MKDLG+   +LGIE+RR R
Sbjct:   74 TSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKE-DLVCRLRKSLYGLKQSPRQWYKRFDTYMLKIGYTRCLYDCCVYYHVFEDGEIILLLLYVDDMLIACKDMSKIEELKKKLGAEFDMKDLGAAQNILGIEIRRDR 225          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT)

HSP 1 Score: 101 bits (251), Expect = 7.420e-24
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPF-VRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGET-------------NLLVVLEDLKHNISQRFRMKDLGSL 128
            M+++R +  LA +++  +  MDV   Y NAP++ EL+V+QP  F+   +D  + V +LRKSLYGLKQS RNWN+ L   LV  G  +S +DSC++        T             N  V L ++K N+S+RF+MKD+G L
Sbjct:   71 MTSIRILMQLAMQYNLTIHQMDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKISGKSMTIVIIWVDDIIIASNCTVTLTNVKGNLSKRFQMKDMGKL 212          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A3L6PRB6_PANMI (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6PRB6_PANMI)

HSP 1 Score: 105 bits (263), Expect = 9.770e-24
Identity = 57/152 (37.50%), Postives = 84/152 (55.26%), Query Frame = 0
Query:    2 STLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLED-------------LKHNISQRFRMKDLGSLPRVLGIEVRRGR 140
            S +RT FS+ A HD ELE +DV   + +  +EE++++ QP  F    ++  FV  L++SLYGLKQS R WN   D F++  G  RS  DSC++     G    LL+ ++D             LK  +S  F MKDLG+  ++ G+E+ R R
Sbjct:  516 SFVRTFFSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEK-FVCELKRSLYGLKQSPRQWNKRFDSFMLSHGFKRSKFDSCVYIKHVNGSPIYLLLYVDDILIATKSKVEITKLKKLLSSEFDMKDLGAAKKIFGMEITRDR 666          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 105 bits (262), Expect = 1.250e-23
Identity = 57/155 (36.77%), Postives = 92/155 (59.35%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRD-VPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVL--EDL-------------KHNISQRFRMKDLGSLPRVLGIEVRRG 139
            ++++R +  LAA+++  +  MDV   + + P++ E+F++QP  F   S + V  V RL+KSLYGLKQS RNWN  LD++L+  G  R+  D C++  + + GE  ++VV+  +DL             K N+  +FRMKDLG +   LGI  ++G
Sbjct:  259 ITSIRILMQLAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG 411          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T0D1_9STRA5.750e-2742.55Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TJ26_9STRA2.360e-2539.49Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA2.700e-2539.35Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA2.350e-2436.77Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A7D9HG25_PARCT2.910e-2437.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2G8JVM6_STIJA4.080e-2437.84Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A2P6P3Z1_ROSCH4.760e-2437.25Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A7D9L0S1_PARCT7.420e-2439.44Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A3L6PRB6_PANMI9.770e-2437.50Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A6S7HLY2_PARCT1.250e-2336.77Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..138
e-value: 1.4E-22
score: 80.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..84
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49133contigH-paniculata_contig49133:634..1111 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49133.12087.1mRNA_H-paniculata_contig49133.12087.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig49133 95..1372 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig49133.12087.1 ID=prot_H-paniculata_contig49133.12087.1|Name=mRNA_H-paniculata_contig49133.12087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRD
VPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEG
GETNLLVVLEDLKHNISQRFRMKDLGSLPRVLGIEVRRGRPNVP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like