prot_H-paniculata_contig49111.12085.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig49111.12085.1
Unique Nameprot_H-paniculata_contig49111.12085.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length180
Homology
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 126 bits (316), Expect = 2.750e-30
Identity = 74/171 (43.27%), Postives = 96/171 (56.14%), Query Frame = 0
Query:   20 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTE---------YRDMVGSLMYASTGTRPD 180
            G   AGR WN T D  L  +G  R   + CLY   GEGG+   LV VYVDDL++A   R  +DE K  ++  F+M+DLGP S VL I++RRDR    I +SQ  YI   LKR G ++C+   TP+  + +++A D       TE         Y  +VGSLMYA  GTRPD
Sbjct: 1152 GLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYATVVGSLMYAMMGTRPD 1321          
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A087T1Z9_STEMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Z9_STEMI)

HSP 1 Score: 125 bits (315), Expect = 3.630e-30
Identity = 68/167 (40.72%), Postives = 101/167 (60.48%), Query Frame = 0
Query:   20 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGG----NSTE--YRDMVGSLMYASTGTRPD 180
            G   +GR WN  L+DFL+  GL+RS    C+YF H    E N+++ +YVDDL+I G   +++EFK +I +RF +KDLGP S++L +++ ++  NG+ T+ Q  YI E L+ F   E + A TP++  +K    D  +      NS E  YR  +GSL+Y S GT PD
Sbjct:  831 GLRQSGRAWNTCLNDFLIQYGLKRSSAKPCIYFCH----EKNIIIGIYVDDLLIVGNMAEINEFKGSIKKRFSVKDLGPASQILSMQICKEE-NGSFTLDQIVYILEILETFKMTEAKCASTPLDFSIKYKKVDEQQWEEIKENSKEIPYRQAIGSLLYMSCGTHPD 992          
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 124 bits (312), Expect = 9.450e-30
Identity = 72/171 (42.11%), Postives = 95/171 (55.56%), Query Frame = 0
Query:   20 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRG---------GNSTEYRDMVGSLMYASTGTRPD 180
            G   AGR WN TLD  L G+G  R  ++ CLY    + G+   LV VYVDDL++A   R  +DE K  ++ +F+M+DLG  S +L I +RRDRP   I +SQ  YI   L R+G  +C+   TP+   VK SA D             G S  Y  ++GS+MYA  GTRPD
Sbjct: 1132 GLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPD 1301          
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 117 bits (292), Expect = 4.530e-27
Identity = 65/159 (40.88%), Postives = 89/159 (55.97%), Query Frame = 0
Query:   26 RNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTE---YRDMVGSLMYASTGTRPD 180
            R WN   + F+ G    RS  D C+Y    EGG   LL+  YVDD++IA +   ++D  K  +S  F MKD+G  SR+L I+++RDR  G + +SQ SY+ + +KRF   E +   TP+ G  K+SA         TE   Y   VGS+MYA  GTRPD
Sbjct:  997 RLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPD 1153          
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A0A9XEM5_LYGHE (Copia protein (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XEM5_LYGHE)

HSP 1 Score: 115 bits (288), Expect = 8.880e-27
Identity = 68/162 (41.98%), Postives = 96/162 (59.26%), Query Frame = 0
Query:   20 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVI-AGRREKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTEYRDMVGSLMYASTGTRPD 180
            G   AGR W   LD  L  +  + S  D C Y   GEGGE  +L+AVYVDDLVI +  REK+DE K ++S+ F M+D+G ++  L IE  RD+  G + +SQ  YI + LK F  ++ +   TP+E  +K+  P  G   +   Y+ ++GSLMY +T TRPD
Sbjct:  174 GLKQAGRQWFKKLDARLKELKFQPSFADPCFYI-RGEGGE-KILIAVYVDDLVILSANREKLDELKEDLSRTFEMRDIGKINYCLGIEFSRDKDGGVL-MSQEKYINKLLKTFRMEKSKTMRTPMEANLKLEKPLEGVCPD-VPYQSLIGSLMYLATATRPD 331          
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 114 bits (286), Expect = 1.070e-26
Identity = 63/162 (38.89%), Postives = 96/162 (59.26%), Query Frame = 0
Query:   20 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTEYRDMVGSLMYASTGTRPD 180
            G   +GRNWN  LD++L+  G  R+  D C+Y    + GE  ++V ++VDDL+IA    +K+ +FK N+  +FRMKDLG +S  L I  ++   NG I ++Q  YI++ L RFG  +C+   TP E + +  +       +   YR++VGSL+Y  T TRPD
Sbjct:  297 GLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQV--DPRRYREIVGSLIYLMTCTRPD 452          
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD)

HSP 1 Score: 115 bits (289), Expect = 1.140e-26
Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 0
Query:   20 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTE---YRDMVGSLMYASTGTRPD 180
            G   A R WN   + FLV  G  RS +DLC+Y     G E  + + +YVDD+++A +++ ++ + K  +S  F MKD+GP SR+L I+++RDR   T+ + Q  YI++ LKRF   E +   TP+    K+++         TE   Y   VGS+MYA  GTRPD
Sbjct:  988 GLKQAPRQWNKRFNSFLVSQGFIRSDSDLCVYIKE-VGPEDYVYLLLYVDDMLLAAKQKSEIQKLKDVLSSEFEMKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVATPMGSHFKLASVKNADERIDTEKVPYLSAVGSVMYAMVGTRPD 1151          
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A2J7RGU0_9NEOP (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RGU0_9NEOP)

HSP 1 Score: 113 bits (283), Expect = 1.280e-26
Identity = 62/158 (39.24%), Postives = 94/158 (59.49%), Query Frame = 0
Query:   24 AGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNG-TITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTEYRDMVGSLMYASTGTRPD 180
            +G++WN+T+    V  GL++   D C++F+        ++VA+YVDD++I G R+ V++ K  +SQR  +KDLGP+S  L I V  DRPNG  I I Q +Y+ E LK FG  +C+G  TP +     +  D  +  +  +Y+  VG L Y +T TRPD
Sbjct:  135 SGKDWNDTITFIFVSFGLKQCTKDPCVFFND------RIIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLGPVSNFLGINV--DRPNGYVIKIHQENYVNETLKTFGMLDCKGCVTPRDPNYN-NFLDGDKPFDEIQYKAAVGRLQYIATCTRPD 283          
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 115 bits (287), Expect = 1.650e-26
Identity = 63/162 (38.89%), Postives = 96/162 (59.26%), Query Frame = 0
Query:   20 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTEYRDMVGSLMYASTGTRPD 180
            G   +GRNWN  LD++L+  G  R+  D C+Y    + GE  ++V ++VDDL+IA    +K+ +FK N+  +FRMKDLG +S  L I  ++   NG I ++Q  YI++ L RFG  +C+   TP E + +  +       +   YR++VGSL+Y  T TRPD
Sbjct:  322 GLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQV--DPRRYREIVGSLIYLMTCTRPD 477          
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A8D8HJI9_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8HJI9_CULPI)

HSP 1 Score: 113 bits (283), Expect = 3.770e-26
Identity = 63/164 (38.41%), Postives = 95/164 (57.93%), Query Frame = 0
Query:   20 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRREK-VDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTE--YRDMVGSLMYASTGTRPD 180
            G   + RNWN   DD++  +G +RS  DLCLY    +G  T +L+  YVDD++IAG   K +   K  +S  F MKD+      L + + RDR  G++TI Q +Y    LKRFG + C+ +P P++ ++K+   +RG     TE  Y+++VG LMY +  +RPD
Sbjct:  152 GLKQSSRNWNRRFDDYVTKLGFKRSQHDLCLYHWKADGVVTYMLI--YVDDILIAGNDLKAIRALKGKLSTEFEMKDMEEAKIFLGLRIDRDRKAGSMTIDQKAYTLGVLKRFGMENCKSSPVPMQPRLKL---ERGDPKELTEKPYKELVGCLMYLTVTSRPD 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A409WVI7_9AGAR2.750e-3043.27Integrase catalytic domain-containing protein (Fra... [more]
A0A087T1Z9_STEMI3.630e-3040.72Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2VT18_TRAPU9.450e-3042.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3F7G4_NOCCA4.530e-2740.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9XEM5_LYGHE8.880e-2741.98Copia protein (Fragment) n=2 Tax=Lygus hesperus Ta... [more]
A0A7D9HG25_PARCT1.070e-2638.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00142E19AD1.140e-2638.18uncharacterized protein LOC103874474 n=1 Tax=Brass... [more]
A0A2J7RGU0_9NEOP1.280e-2639.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HLY2_PARCT1.650e-2638.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8D8HJI9_CULPI3.770e-2638.41Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 24..143
e-value: 1.9E-23
score: 83.4
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 62..180
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 62..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49111contigH-paniculata_contig49111:756..1373 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49111.12085.1mRNA_H-paniculata_contig49111.12085.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig49111 79..1373 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig49111.12085.1 ID=prot_H-paniculata_contig49111.12085.1|Name=mRNA_H-paniculata_contig49111.12085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
MEEEWGALMKNGTWESEDPGSLPAGRNWNNTLDDFLVGIGLERSITDLCL
YFSHGEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGPLS
RVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKIS
APDRGRGGNSTEYRDMVGSLMYASTGTRPD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like