mRNA_H-paniculata_contig49107.12083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49107.12083.1
Unique NamemRNA_H-paniculata_contig49107.12083.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49107.12083.1 vs. uniprot
Match: A0A0A9YZ05_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YZ05_LYGHE)

HSP 1 Score: 56.6 bits (135), Expect = 3.840e-7
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:    1 EVWIADSGATVHTTPSRDNIFNYCKTERTTYLTVASGVQLPIEGYGKLMIVFKTPECNYQLLLGEVAHVPELDYNLFS 234
            +VWI DSG+++H T  R+   +  K+  T Y+ + S  +LP+ G G +MI     +  Y  ++ +V +VPEL  NLFS
Sbjct:  278 DVWILDSGSSLHMTGHREYFSSIDKSFETKYVVLGSNTRLPVHGTGTVMIKKMINDVWYDSIIKDVLYVPELKRNLFS 355
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BLAST of mRNA_H-paniculata_contig49107.12083.1 vs. uniprot
Match: A0A0A9YT45_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YT45_LYGHE)

HSP 1 Score: 56.6 bits (135), Expect = 3.960e-7
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:    1 EVWIADSGATVHTTPSRDNIFNYCKTERTTYLTVASGVQLPIEGYGKLMIVFKTPECNYQLLLGEVAHVPELDYNLFS 234
            +VWI DSG+++H T  R+   +  K+  T Y+ + S  +LP+ G G +MI     +  Y  ++ +V +VPEL  NLFS
Sbjct:  278 DVWILDSGSSLHMTGHREYFSSIDKSFETKYVVLGSNTRLPVHGTGTVMIKKMINDVWYDSIIKDVLYVPELKRNLFS 355
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BLAST of mRNA_H-paniculata_contig49107.12083.1 vs. uniprot
Match: A0A8K0G3N9_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G3N9_9COLE)

HSP 1 Score: 53.1 bits (126), Expect = 6.280e-6
Identity = 27/98 (27.55%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:    1 EVWIADSGATVHTTPSRDNIFNYCKTERTTYLTVASGVQLPIEGYGKLMIVFKTPECNYQLLLGEVAHVPELDYNLFSLRVAADLNYPSVIERSGVRV 294
            E WIADSGA+ HT+  ++   NY + ++ T + + +G      G GK+ ++    +        +V +VP++ +NLFS+  A D  Y  + +    ++
Sbjct:  211 ETWIADSGASEHTSNQKEWFENYYEFDKPTEIKIGNGSVKNAHGKGKISLIAFEGQDYIPTESNDVLYVPDIKFNLFSIGAALDKGYTMMTDNKTCKI 308
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BLAST of mRNA_H-paniculata_contig49107.12083.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.210e-5
Identity = 28/82 (34.15%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:    7 WIADSGATVHTTPSRDNIFNYCKTERTTYLTVASGVQLPIEGYGKLMIVFKTPECNYQLLLGEVAHVPELDYNLFSLRVAAD 252
            W+ DSGATVH TP RD+++ Y       Y+ +A G ++ + G G + +     +    + + EV HVP  D  L S+   AD
Sbjct:  169 WLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGK---SIRMVEVLHVPGFDRRLLSVGKLAD 247
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BLAST of mRNA_H-paniculata_contig49107.12083.1 vs. uniprot
Match: A0A438GJ42_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GJ42_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 2.290e-5
Identity = 26/80 (32.50%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:    1 EVWIADSGATVHTTPSRDNIFNYCKTERTTYLTVASGVQLPIEGYGKLMIVFKTPECNYQLLLGEVAHVPELDYNLFSLR 240
            ++W+ DSGA+ H +    N++N+     +T+++VA G  +P++G GK  +V KT E        EV +VP     L S++
Sbjct:  383 DLWVVDSGASNHMSNKLTNLYNFRPCSSSTFVSVADGKDVPVQGKGKTKLVSKTIE-------SEVLYVPSFPVQLLSVQ 455
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BLAST of mRNA_H-paniculata_contig49107.12083.1 vs. uniprot
Match: A0A438GD20_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GD20_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 2.320e-5
Identity = 26/80 (32.50%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:    1 EVWIADSGATVHTTPSRDNIFNYCKTERTTYLTVASGVQLPIEGYGKLMIVFKTPECNYQLLLGEVAHVPELDYNLFSLR 240
            ++W+ DSGA+ H +    N++N+     +T+++VA G  +P++G GK  +V KT E        EV +VP     L S++
Sbjct:  394 DLWVVDSGASNHMSNKLTNLYNFRPCSSSTFVSVADGKDVPVQGKGKTKLVSKTIE-------SEVLYVPSFPVQLLSVQ 466
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BLAST of mRNA_H-paniculata_contig49107.12083.1 vs. uniprot
Match: A5BDR0_VITVI (Integrase catalytic domain-containing protein n=6 Tax=Vitis vinifera TaxID=29760 RepID=A5BDR0_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-5
Identity = 26/80 (32.50%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:    1 EVWIADSGATVHTTPSRDNIFNYCKTERTTYLTVASGVQLPIEGYGKLMIVFKTPECNYQLLLGEVAHVPELDYNLFSLR 240
            ++W+ DSGA+ H +    N++N+     +T+++VA G  +P++G GK  +V KT E        EV +VP     L S++
Sbjct:  365 DLWVVDSGASNHMSNKLTNLYNFRPCSSSTFVSVADGKDVPVQGKGKTKLVSKTIE-------SEVLYVPSFPVQLLSVQ 437
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BLAST of mRNA_H-paniculata_contig49107.12083.1 vs. uniprot
Match: A0A438K907_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K907_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 2.360e-5
Identity = 26/80 (32.50%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:    1 EVWIADSGATVHTTPSRDNIFNYCKTERTTYLTVASGVQLPIEGYGKLMIVFKTPECNYQLLLGEVAHVPELDYNLFSLR 240
            ++W+ DSGA+ H +    N++N+     +T+++VA G  +P++G GK  +V KT E        EV +VP     L S++
Sbjct:  802 DLWVVDSGASNHMSNKLTNLYNFRPCSSSTFVSVADGKDVPVQGKGKTKLVSKTIE-------SEVLYVPSFPVQLLSVQ 874
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49107.12083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A0A9YZ05_LYGHE3.840e-737.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9YT45_LYGHE3.960e-737.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A8K0G3N9_9COLE6.280e-627.55Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A225V0K2_9STRA2.210e-534.15Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A438GJ42_VITVI2.290e-532.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GD20_VITVI2.320e-532.50Retrovirus-related Pol polyprotein from transposon... [more]
A5BDR0_VITVI2.340e-532.50Integrase catalytic domain-containing protein n=6 ... [more]
A0A438K907_VITVI2.360e-532.50Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49107contigH-paniculata_contig49107:247..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930452.6858058-CDS-H-paniculata_contig49107:246..5521622930452.6858058-CDS-H-paniculata_contig49107:246..552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49107 247..552 +
1691481298.1443746-CDS-H-paniculata_contig49107:246..5521691481298.1443746-CDS-H-paniculata_contig49107:246..552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49107 247..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49107.12083.1prot_H-paniculata_contig49107.12083.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49107 247..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49107.12083.1

>prot_H-paniculata_contig49107.12083.1 ID=prot_H-paniculata_contig49107.12083.1|Name=mRNA_H-paniculata_contig49107.12083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
EVWIADSGATVHTTPSRDNIFNYCKTERTTYLTVASGVQLPIEGYGKLMI
VFKTPECNYQLLLGEVAHVPELDYNLFSLRVAADLNYPSVIERSGVRVAM
HG
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mRNA from alignment at H-paniculata_contig49107:247..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49107.12083.1 ID=mRNA_H-paniculata_contig49107.12083.1|Name=mRNA_H-paniculata_contig49107.12083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig49107:247..552+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCATACAACCCCTTCACG
GGATAATATATTCAACTATTGTAAAACTGAGAGAACAACTTACTTGACTG
TTGCGTCAGGTGTACAGCTACCCATCGAGGGGTATGGAAAGCTGATGATA
GTTTTCAAAACGCCAGAATGCAATTACCAACTGCTTCTGGGGGAGGTTGC
ACACGTACCAGAACTAGATTACAATCTCTTTTCCCTTCGGGTTGCGGCTG
ATCTAAATTATCCATCAGTAATTGAGCGATCGGGGGTACGCGTGGCCATG
CATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig49107:247..552+

>mRNA_H-paniculata_contig49107.12083.1 ID=mRNA_H-paniculata_contig49107.12083.1|Name=mRNA_H-paniculata_contig49107.12083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig49107:247..552+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCATACAACCCCTTCACG
GGATAATATATTCAACTATTGTAAAACTGAGAGAACAACTTACTTGACTG
TTGCGTCAGGTGTACAGCTACCCATCGAGGGGTATGGAAAGCTGATGATA
GTTTTCAAAACGCCAGAATGCAATTACCAACTGCTTCTGGGGGAGGTTGC
ACACGTACCAGAACTAGATTACAATCTCTTTTCCCTTCGGGTTGCGGCTG
ATCTAAATTATCCATCAGTAATTGAGCGATCGGGGGTACGCGTGGCCATG
CATGGCGAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCATACAACCCC
TTCACGGGATAATATATTCAACTATTGTAAAACTGAGAGAACAACTTACT
TGACTGTTGCGTCAGGTGTACAGCTACCCATCGAGGGGTATGGAAAGCTG
ATGATAGTTTTCAAAACGCCAGAATGCAATTACCAACTGCTTCTGGGGGA
GGTTGCACACGTACCAGAACTAGATTACAATCTCTTTTCCCTTCGGGTTG
CGGCTGATCTAAATTATCCATCAGTAATTGAGCGATCGGGGGTACGCGTG
GCCATGCATGGC
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