mRNA_H-paniculata_contig49101.12082.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49101.12082.1
Unique NamemRNA_H-paniculata_contig49101.12082.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49101.12082.1 vs. uniprot
Match: D7FYJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 3.710e-31
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   31 QVNDLEGRSRAYVEMVAPLLGPLSAALAGWQSWGGQPPWPGFADAGVSGEVCSSCRILSRLCGGFASTPAKV 246
            +VNDLEGRSRAY E+V P+LGP SAALAGWQ W G PPWPGF+D GVS E+  SCR+LSRLC  F STPAKV
Sbjct:  175 KVNDLEGRSRAYSELVTPVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAKV 246
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BLAST of mRNA_H-paniculata_contig49101.12082.1 vs. uniprot
Match: A0A6H5KJI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.860e-29
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   31 QVNDLEGRSRAYVEMVAPLLGPLSAALAGWQSWGGQPPWPGFADAGVSGEVCSSCRILSRLCGGFASTPAKV 246
            +VNDLEGRSRAY E+VAP+LGP SAALAGWQ W G PPWPGF+D GVS E+  SCR+LSRLC  F STPAK 
Sbjct:  177 KVNDLEGRSRAYSELVAPVLGPFSAALAGWQGWTGPPPWPGFSDEGVSRELSCSCRVLSRLCRTFVSTPAKA 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49101.12082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYJ7_ECTSI3.710e-3173.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJI2_9PHAE2.860e-2973.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49101contigH-paniculata_contig49101:449..1260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930452.6220546-CDS-H-paniculata_contig49101:448..5631622930452.6220546-CDS-H-paniculata_contig49101:448..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49101 449..563 +
1691481298.114332-CDS-H-paniculata_contig49101:448..5631691481298.114332-CDS-H-paniculata_contig49101:448..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49101 449..563 +
1622930452.6358285-CDS-H-paniculata_contig49101:1126..12601622930452.6358285-CDS-H-paniculata_contig49101:1126..1260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49101 1127..1260 +
1691481298.1330752-CDS-H-paniculata_contig49101:1126..12601691481298.1330752-CDS-H-paniculata_contig49101:1126..1260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49101 1127..1260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49101.12082.1prot_H-paniculata_contig49101.12082.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49101 449..1260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49101.12082.1

>prot_H-paniculata_contig49101.12082.1 ID=prot_H-paniculata_contig49101.12082.1|Name=mRNA_H-paniculata_contig49101.12082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MHFFITWPSQQVNDLEGRSRAYVEMVAPLLGPLSAALAGWQSWGGQPPWP
GFADAGVSGEVCSSCRILSRLCGGFASTPAKV*
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mRNA from alignment at H-paniculata_contig49101:449..1260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49101.12082.1 ID=mRNA_H-paniculata_contig49101.12082.1|Name=mRNA_H-paniculata_contig49101.12082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=812bp|location=Sequence derived from alignment at H-paniculata_contig49101:449..1260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTTTTTTATCACGTGGCCATCACAACAGGTGAATGACTTGGAAGG
CAGATCGCGAGCGTATGTAGAGATGGTGGCACCATTGTTGGGACCTCTGT
CGGCTGCACTGGCAGGTAGGAGGAAACTCTCGATTCGATTAGGCATTCGC
ACGTGGAATGGGAGGAGCGTGAGTGCTCCCGGTGCTTGGTTGTCGTCGTG
TGGGTGGGTGGGTGGGTGGTGATTATTGGGTGGTGTCTCAATTTCTCTCT
TGGTTCCTGTGCTGTTTCTCGGTAAGCATGAGTTGATGGTTCATCAAAGG
TGATTGTCTAGGAAAGGTTAGGCAGTTGGGCCGGGGAGGGGAGGGTGCAA
ATTAGTATCCCTTCAAAAGACACCCAACTCACCGCTTGTTAATTCAAATA
TAATTTGAAGTAAAAAAAAGAACGGTTGATGGAAATAACCACCATTTATC
ATCAATGTTACGAAAATTCTTGGGAAGAAGTTATGTACATACACAGAACC
CTCCCTAGAAATCGTACATGAACATTTCAAGGTCATCATCCACTTGATTT
TGTTTTTCGTATCCTGTTTCGTAACTTGGCTAATTCAAATATCGCTGTGT
TTCTTAATTGTATTCATTGCTCACAGCTCTGATATTTTGTTACCTCCTCT
TGGTCTCGTTGTGTTAAACGAAAGGCAGGCTGGCAGAGCTGGGGAGGCCA
GCCCCCGTGGCCCGGGTTCGCTGACGCAGGCGTTTCCGGCGAGGTGTGCT
CGAGCTGCCGCATTTTGTCTCGACTCTGTGGAGGCTTCGCGTCAACGCCT
GCCAAGGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig49101:449..1260+

>mRNA_H-paniculata_contig49101.12082.1 ID=mRNA_H-paniculata_contig49101.12082.1|Name=mRNA_H-paniculata_contig49101.12082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig49101:449..1260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTTTTTTATCACGTGGCCATCACAACAGGTGAATGACTTGGAAGG
CAGATCGCGAGCGTATGTAGAGATGGTGGCACCATTGTTGGGACCTCTGT
CGGCTGCACTGGCAGATGCATTTTTTTATCACGTGGCCATCACAACAGGT
GAATGACTTGGAAGGCAGATCGCGAGCGTATGTAGAGATGGTGGCACCAT
TGTTGGGACCTCTGTCGGCTGCACTGGCAGGCTGGCAGAGCTGGGGAGGC
CAGCCCCCGTGGCCCGGGTTCGCTGACGCAGGCGTTTCCGGCGAGGTGTG
CTCGAGCTGCCGCATTTTGTCTCGACTCTGTGGAGGCTTCGCGTCAACGC
CTGCCAAGGTATGAGCTGGCAGAGCTGGGGAGGCCAGCCCCCGTGGCCCG
GGTTCGCTGACGCAGGCGTTTCCGGCGAGGTGTGCTCGAGCTGCCGCATT
TTGTCTCGACTCTGTGGAGGCTTCGCGTCAACGCCTGCCAAGGTATGA
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