prot_H-paniculata_contig4910.12081.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4910.12081.1
Unique Nameprot_H-paniculata_contig4910.12081.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length56
Homology
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BLAST of mRNA_H-paniculata_contig4910.12081.1 vs. uniprot
Match: A0A6H5J7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.810e-17
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0 
Query:    1 MVAPVRETAAQLLAVAALQLPPARLRQAATLLCELTIAEEWQARHGGFCGLESLCA 56
            MVAPVRETAAQLLAVAALQL   +LRQAA LL ELT + EWQARHGGFC LESLCA
Sbjct:    1 MVAPVRETAAQLLAVAALQLEADKLRQAARLLFELTASGEWQARHGGFCSLESLCA 56
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BLAST of mRNA_H-paniculata_contig4910.12081.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.850e-17
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0 
Query:    1 MVAPVRETAAQLLAVAALQLPPARLRQAATLLCELTIAEEWQARHGGFCGLESLCA 56
            MVAPVRETAAQLLAVAALQL   +LRQAA LL ELT + EWQARHGGFC LESLCA
Sbjct:  402 MVAPVRETAAQLLAVAALQLEADKLRQAARLLFELTASGEWQARHGGFCSLESLCA 457
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4910.12081.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7D4_9PHAE2.810e-1782.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBB5_ECTSI2.850e-1782.14Essential abundant protein involved in regulation ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4910contigH-paniculata_contig4910:14269..14436 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4910.12081.1mRNA_H-paniculata_contig4910.12081.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4910 14269..14451 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4910.12081.1 ID=prot_H-paniculata_contig4910.12081.1|Name=mRNA_H-paniculata_contig4910.12081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MVAPVRETAAQLLAVAALQLPPARLRQAATLLCELTIAEEWQARHGGFCG
LESLCA
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