mRNA_H-paniculata_contig4910.12080.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4910.12080.1
Unique NamemRNA_H-paniculata_contig4910.12080.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4910.12080.1 vs. uniprot
Match: A0A6H5J7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D4_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.700e-8
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   85 EVFDLVWKALGALHKHSACVEDVAELLETCCED 183
            EVFDLVWKAL  L + S CVED+A+LLETCCED
Sbjct:  161 EVFDLVWKALEDLDQDSTCVEDLADLLETCCED 193
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BLAST of mRNA_H-paniculata_contig4910.12080.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 5.860e-8
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   85 EVFDLVWKALGALHKHSACVEDVAELLETCCED 183
            EVFDLVWKAL  L + S CVED+A+LLETCCED
Sbjct:  539 EVFDLVWKALEDLDQDSTCVEDLADLLETCCED 571
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4910.12080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7D4_9PHAE5.700e-875.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBB5_ECTSI5.860e-875.76Essential abundant protein involved in regulation ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4910contigH-paniculata_contig4910:12542..13670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size206
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930452.2497096-CDS-H-paniculata_contig4910:12542..125991622930452.2497096-CDS-H-paniculata_contig4910:12542..12599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 12543..12599 -
1691481297.957117-CDS-H-paniculata_contig4910:12542..125991691481297.957117-CDS-H-paniculata_contig4910:12542..12599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 12543..12599 -
1622930452.262557-CDS-H-paniculata_contig4910:13523..136701622930452.262557-CDS-H-paniculata_contig4910:13523..13670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 13524..13670 -
1691481297.9671054-CDS-H-paniculata_contig4910:13523..136701691481297.9671054-CDS-H-paniculata_contig4910:13523..13670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 13524..13670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4910.12080.1prot_H-paniculata_contig4910.12080.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4910 12543..13670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4910.12080.1

>prot_H-paniculata_contig4910.12080.1 ID=prot_H-paniculata_contig4910.12080.1|Name=mRNA_H-paniculata_contig4910.12080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
GSSGGSDTAGSRDSGGNARRENKQEEEEEVFDLVWKALGALHKHSACVED
VAELLETCCEDAASRRRR
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mRNA from alignment at H-paniculata_contig4910:12542..13670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4910.12080.1 ID=mRNA_H-paniculata_contig4910.12080.1|Name=mRNA_H-paniculata_contig4910.12080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1129bp|location=Sequence derived from alignment at H-paniculata_contig4910:12542..13670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTCTAGTGGTGGGTCGGATACTGCAGGGTCAAGGGACAGTGGAGGAAA
TGCCAGGAGGGAAAATAAGCAGGAGGAGGAAGAGGAGGTATTTGATTTGG
TGTGGAAGGCGTTGGGTGCGTTACACAAACACTCTGCGTGCGTCGAGGTG
AGGAGGAAGGAGGGTGTAGAAATATCGAGGTAGCGCGTGCATACGGTGGC
GGTTTGGAAGTCATACTCTTTCGCTAATTTTAACAATTTTGTTAGGAGTT
GAAAAACATCACGTTTTGGAAGTGGATGTGTTTGACGTTGTTCCCCGTAC
AATCACGCAATTTCGCGTATCCGACTTCGAGCAGAAATGGCTCACGAGCT
ATAAAAGTACAGGATGGCGTCTTGCAATCCAATTTTCAATCCTCTCCCGC
TCCCTTCTTACTCTCTTCCTACCTCCGTTCGATTCGTCCATTCCGTTTCA
ACCGCCTCATTCCGCACGGTATGAATTATGAGAAAAACGCGAATTCATGC
TGCACTCTGGCGCTATCCTGGACCTTGGCAGCAACCCTGCAGCAGTAGTA
AACCTCCTACCTTACACACTAGTGTGATTGGGCGGCTCTGCGAGATTGGG
AGAGCACACACAAACGGTCCGAGGACTCAAAATGACCAAAACCGTAGACA
ACGCCAATTGTGATGAGGTTCCTATCCCTCTCTGTGATATCGTTCACACG
TAGATTGTTGGTTAGTTATCCTCTAAGACTCACGTTTATTAGCTCTCCCA
GTTCTCTTTGACGCCAAACCCAAACGTTTGCGTAACAATGATTAGCGATG
GGGAGCTATCCTCACCCAGGAACTACAGCTACATATTATAGTTCCTGCGT
GAACCCTAGCATTCTCTTCTCATACCCGGAATCATCCCAACCGATACAAA
ACCAAGTGAAACCGTTAAACGACATACATGCTGGTTCTGGTCGAACCGGC
ACATTTCAATAACCACGCTAAGAAGTATGTTGTCTTCCTACTCTAGCTAC
TACCGTCTCTGACCCTTATGACACTAGCCCTATTCTTAATCCTACATCCT
GTCTTTATCCCGAATCCCAAGGATGTTGCGGAGCTCCTGGAAACGTGCTG
CGAAGACGCTGCTAGCCGCAGACGTCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4910:12542..13670-

>mRNA_H-paniculata_contig4910.12080.1 ID=mRNA_H-paniculata_contig4910.12080.1|Name=mRNA_H-paniculata_contig4910.12080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig4910:12542..13670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTCTAGTGGTGGGTCGGATACTGCAGGGTCAAGGGACAGTGGAGGAAA
TGCCAGGAGGGAAAATAAGCAGGAGGAGGAAGAGGAGGTATTTGATTTGG
TGTGGAAGGCGTTGGGTGCGTTACACAAACACTCTGCGTGCGTCGAGGGC
TCTAGTGGTGGGTCGGATACTGCAGGGTCAAGGGACAGTGGAGGAAATGC
CAGGAGGGAAAATAAGCAGGAGGAGGAAGAGGAGGTATTTGATTTGGTGT
GGAAGGCGTTGGGTGCGTTACACAAACACTCTGCGTGCGTCGAGGATGTT
GCGGAGCTCCTGGAAACGTGCTGCGAAGACGCTGCTAGCCGCAGACGTCG
GGATGTTGCGGAGCTCCTGGAAACGTGCTGCGAAGACGCTGCTAGCCGCA
GACGTCGG
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