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Homology
BLAST of mRNA_H-paniculata_contig4909.12074.1 vs. uniprot
Match: D7FTY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY2_ECTSI) HSP 1 Score: 297 bits (761), Expect = 5.700e-93 Identity = 181/396 (45.71%), Postives = 246/396 (62.12%), Query Frame = 3
Query: 93 TGGLRRIGVGQGGRLSVRLPRATAILRVTTAWSDECDITVSRVPLRMVALGDYKGEPPDMKNINIGDLADCGLKADIDESMQQISVATVGDEGGEQEAYFIQAVIPEFFSVDYLATRGSVTIRHKLKGNCHVHLDEGDINVDVVRGESTKLVTGCGRVVSKELEGNVTIAATE-VNAKLVNGANVQIDATG-DSSSVTVGGLYSSAARITSEGRVNVSNCHGRILVSTIGALGVVTLASVNGVAEVSTGGGDANIHVEALEKGTCSTIRSGRGDILVSMSHDVRARINLAGKIGALPSVFDGLVQADKAQGRIDF----PSMA--QGITVRQDIGGGKINLVGAREQSLDNFF-GHDEQNAVLPSLNVSSEKGGVGLETVSWIENITRRFNSARDS 1253
+G + I +GQGGRL + + +A A+++VTT W D C + VSR+P A D + + +L GL DE+ Q+++A + ++ Y I+AV+PE FSV+ LA+ G+V++ K+KG+C V LD GDINV +VRGE+ +L TG G + ELEGNV I AT V A+L+NGA V+I+ TG D SV VG LYSS A ITS G V VS+CHGRI V T G V L+SV+G A VS G G A +H++ LE+GT S IRS GDI VS+S V A + + G + +PS F G Q +A G I PS A G T D GGGKI++VGAR QSL +F G+ +V P L+V +E G V +ET+SW +NITR+F +AR++
Sbjct: 39 SGHAQTIPIGQGGRLVIDMAKAAAVIKVTTQWIDSCSVEVSRLP----AGSDGRSLAGAGAKEVLSNLDAAGLSLHADEAHAQVTLAHDKEHPSVEDTYLIEAVVPELFSVELLASHGNVSVSKKIKGDCKVRLDRGDINVGIVRGETIRLSTGRGHIKVDELEGNVDITATSNVRARLINGAKVKINTTGHDDPSVNVGALYSSGAHITSAGNVGVSSCHGRIAVHTADTSGSVNLSSVSGTAHVSAGEGGATVHLDVLEEGTASHIRSNGGDINVSLSQQVDADVEITGDVVKVPSTFKGDTQRGRAVGSIYSAQVEPSRATRHGSTSSTDAGGGKIDMVGARGQSLRQYFPGNTATTSVRPKLSVVAEGGCVVVETLSWADNITRKF-AAREA 429
BLAST of mRNA_H-paniculata_contig4909.12074.1 vs. uniprot
Match: A0A4D9CTK1_9STRA (DUF4097 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTK1_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 2.230e-6 Identity = 87/370 (23.51%), Postives = 145/370 (39.19%), Query Frame = 3
Query: 126 GGRLSVRLPRATAILRVTTAWSDECDITVSRVPLRMVALGDYKGEPPDMKNINIGDLADCGLKADIDESMQQISVATVGD-------------EGGEQEAYFIQAVIPE---FFSVDYLATRGSVTIRHKLKGN-CHVHLDEGDINVDVVRGESTKLVTGCGRV-VSKELEGNVTIAATEVNAKLVNGANVQIDATG------------------DSSSVTVGGLYSSAARI--TSE----------------GR---------VNVSNCHGRILVSTIGALGVVTLASVNGVAEVSTGGGDA--------NIHVEALEKGTCSTIRSGRGDILVSMSHDVRARINLAGKIGALPSVFDGLVQADKAQGR 1022
G SVRL R A + +T+ W D ++ + PP +++ L G K +E +S +V D EG Y + +PE + G++++ K++G + +GD++++ +RG + +V V K LEG+VT+ A + AK+V G V++ G + +TV LY A I T+E GR V + HG + V + G V L VNG A V TGGGD ++ E LE G + + + G + + ++ D++A + + GK + L+ A K +GR
Sbjct: 32 GSSFSVRLHRVPAQISITSGWIDHTELRIDT--------------PPHAPALDVQVLRGNGAKGTAEEE-STLSTLSVSDAKILLPPDALKYMEG----KYHVHITVPEKLHSLQAHLSQSPGTISVTSKVEGEGIDILSKQGDVHINKIRGVTXXXXXXXXKVTVEKWLEGDVTVRAGRLTAKMVKGHRVRMLVRGREGEREAGRAEPGEVGREGEAPLTVEALYGKDAAILCTAEPEPASPLHREMEGGKGGRGGGEGEGTAVCIGRAHGALKV--VATKGGVRLGGVNGSAVVQTGGGDREGGRAGGIDVRFEGLEPGQTNVLATQGGPVNLLVARDLQASLRVEGK-----AAVSSLLAALKEEGR 375
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 297.0 |
| Seed ortholog evalue | 1.4e-77 |
| Seed eggNOG ortholog | 2880.D7FTY2 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2CACM@1,2R08A@2759 |
| Ec32 ortholog description | Domain of unknown function DUF4098 |
| Ec32 ortholog | Ec-07_002820.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1413 |
| Cds size | 1260 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4909.12074.1 >prot_H-paniculata_contig4909.12074.1 ID=prot_H-paniculata_contig4909.12074.1|Name=mRNA_H-paniculata_contig4909.12074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=420bp
MMQLSRVHMKHIGIYQHFSTAAGTGGLRRIGVGQGGRLSVRLPRATAILR
VTTAWSDECDITVSRVPLRMVALGDYKGEPPDMKNINIGDLADCGLKADI
DESMQQISVATVGDEGGEQEAYFIQAVIPEFFSVDYLATRGSVTIRHKLK
GNCHVHLDEGDINVDVVRGESTKLVTGCGRVVSKELEGNVTIAATEVNAK
LVNGANVQIDATGDSSSVTVGGLYSSAARITSEGRVNVSNCHGRILVSTI
GALGVVTLASVNGVAEVSTGGGDANIHVEALEKGTCSTIRSGRGDILVSM
SHDVRARINLAGKIGALPSVFDGLVQADKAQGRIDFPSMAQGITVRQDIG
GGKINLVGAREQSLDNFFGHDEQNAVLPSLNVSSEKGGVGLETVSWIENI
TRRFNSARDSPEQSQSHTH* back to topmRNA from alignment at H-paniculata_contig4909:2043..5314+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4909.12074.1 ID=mRNA_H-paniculata_contig4909.12074.1|Name=mRNA_H-paniculata_contig4909.12074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3272bp|location=Sequence derived from alignment at H-paniculata_contig4909:2043..5314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCCTCGAGAGCGGTGTAGTGATGATGCAACTATCAAGGGTGCATATG
AAGCATATAGGCATATATCAACATTTCAGTACAGCTGCGGGCACAGGGGG
GTTGAGAAGGATTGGTGTAGGTCAGGGTGGACGACTGTCCGTTCGCTTGC
CTAGGGCTACGGCAATTTTGAGGGTGACTACAGCATGGAGTGACGAATGC
GATATAACTGTCTCGAGGGTACCCTTGAGGATGGTTGCCCTTGGTGACTA
CAAAGGCGAGCCACCAGATATGAAGAATATCAATATTGGTGACCTAGCTG
ACTGTGGACTGAAGGCTGATATAGATGAAAGTATGCAGCAGATATCTGTC
GCAACAGTTGGGGACGAAGGGGGTGAACAAGAGGCCTACTTCATACAGGC
TGTGATTCCGGAGTTTTTTTCTGTAGACTATTTGGCGACACGCGGCAGTG
TTACCATACGCCACAAGTTAAAAGGAAACTGCCATGTTCACCTTGATGAG
GGAGATATCAATGTTGACGTAGTGCGAGGGGAATCTACGAAACTGGTGAC
AGGATGCGGTCGTGTTGTTAGTAAAGAGCTGGAGGGTAATGTGACCATTG
CCGCCACGGAGGTGAGCAAGGAGTTTTGGTTAGTTTGTTGTTCACTGTTC
AACTGTCTGGAGTCTGACCCCGATTTCTACTATACATCGCATATGCAATC
GTTTTTCACTATTATACGACGTAGTTGTTATTTAGAACATAGATTTATCA
TGAGATAAACATATGGAACGGGAAATCAATCAGGATAATTTTTCTGTGTC
AGTTCAAAACCTTTTTGCGTGCCCTTCTTCTGTGCCATGCGTGTTATCTG
TACATAGATCTTACAGTGGCATGCGTGTTATCTGTACATAGATCTTACAG
TGGTTTGTATACTTGAGCCAGAGAGAAGTGCTGGGTATGGTGACAATACA
CGACTTGCACATAGTCATGGCTAATTTCGTATTAGAAAATTAGTGTAGTG
TATTGTTGTACATTATATTTCAACTCCACATGTTTCAGGGACCTGCAGCG
AGCAGCACACGCGCCTCGACGTTGATTCATGTCGGTTGTTCCACATAGCC
CACTTTAACTATTCCAGAATACGCTGTGAACAAACAGTAGAGTGCCGGTG
CTGCGACTGCCGCAAGAAACGCATAGTCGTTGCAGAGCCTGGGTTTCATC
AAGTGCGACGGGTGCATTTGGCAGCCCATTTGAAAGGAGTTGGTGTTGCA
GACTTCCCGGCGTCTGGTCGAGGTTTAGTGTCAGGAGGCCAATACTTATA
CTTGATGTTGGGTACAGTACTTGCGGCGTACTAAATAAGCGGGGTGCAAT
TCCTATGGCCCCCACATCCATGTATCGGTCGTGTGCGATGGAGTTTGATC
ACGATGGACAACGTTCACTTTGCTGCAATCAGCGCCTGTATTGGAGTCGT
TTCTTCGTCTACATGTATTGGAGTCGAGACAAGCCCTCTCCTCCTGGTTA
TTGCGCAGGTGAACGCCAAGCTGGTCAACGGTGCCAACGTACAAATCGAT
GCTACCGGAGATAGTTCATCGGTTACGGTTGGTGGTTTGTATTCATCAGC
AGCCCGAATCACGTCGGAGGGAAGGGTTAACGTTTCAAATTGCCACGGTC
GGATTTTGGTCTCGACCATAGGTGCCTTGGGCGTTGTCACGCTTGCGAGC
GTCAACGGCGTTGCTGAAGTATCAACAGGTACGATTCATGCAGGTTGGGA
TCGGATACCTTACAGGTTACATTTGATAGTGTTCAGCGCGAAGTTGGTTG
CTATGATACCTAAATCTGATGCACAGAGTTGGAATTTGCCGCCTTGTAGC
GTGCACAATGTTTTTTATATCCGTTACGCGTACAGGGAGTGCTTGCTGTA
TGCTTGTGCAAAATGGTACAAAATCTGGTAGGTGGTTTTGCCTTTAGGTG
CTTGCCCCTGCGGTCTTGATTACATGAGCGCTTGCCCACTATTTTCGTAG
TGGCTAATTTTCAAAAGCATAGCCAGTTGCCGCAACCTTGATTAAAAGTC
CAGGTTTTGGGTGCTCCGCGAATTGTATTCGACACTAAACCATTGCAATA
TTGGCTACCCATTGCAGGTGGGGGAGATGCAAATATACACGTGGAAGCGC
TCGAAAAGGGTACATGCAGTACCATCAGGTGAGGAGAGACCACACATCTG
CGCAATAATCTTGAATTGTGTACGTCAATAATGCATGTAAACATTCTTGC
TTGATCAGGTCTCTGGGATAATTTCCACACCATTTTTAGATCTAAAATTT
TGACGTGTAGGCTCGTGTTCTTGTTCCCGGACGTGTTGAAGTACTTGGGA
ATTTTCTGGTAAGGAGCGTGTATCATCTGGACATGGCGCCCCGTATGACA
ACGTACATAGTCCTTCACTGATTAGTGGGCAAAGTAAGACCCATTCACAC
AGATTTTTTGGCGTTGAAACTTGCAGTTTGTAATAGAGTATAGAACTCTT
GGCATGGATTCATGGACATTACAATGTTATCTGAGTGGCGCAGGGCAGAA
AAAACAGTCAAGAGAACCTGGTAGTTTGTAGTCTTTTCCTCTGTACGGCT
CTTCAGTAGTCCACCAAATAACCTTGTGGCCCATTTTATTATGCATTCGA
ATTTGTTATGAAGTATGCAAGTATGAGCCTTAACCAGGTTGGCAATGTAC
ATCCTTGTGCATCGCGTATGCTGCCTCGCTGTTTCCGTCTAAAAAATTCA
GGTCTGGTCGAGGCGATATTTTAGTGTCCATGTCCCACGATGTGAGAGCG
AGAATTAATTTGGCAGGAAAGATTGGTGCGCTTCCCTCTGTCTTCGATGG
ATTGGTACAAGCAGATAAGGCACAAGGCAGGATTGACTTCCCGAGCATGG
CGCAGGGTATCACTGTCCGGCAGGACATTGGAGGTGGCAAGATTAATCTT
GTTGGGGCTCGAGAGCAGTCGCTAGATAATTTTTTCGGCCACGATGAACA
GAACGCCGTTCTCCCAAGCCTCAACGTCTCAAGCGAGAAGGGGGGCGTTG
GATTGGAAACAGTGAGTTGGATCGAAAACATTACCCGTAGATTCAATTCG
GCACGTGATTCTCCCGAACAGAGCCAAAGCCACACTCATTGACGGGTTTA
CTCTTCGCCACTTTAGTAATGAAAACATTTTCCGATACGTCAAAAGTTTC
ACGTAGCTATGAAAAGTTGAGGAACGAAAAGAGAGGATAGTATACCCAGT
GCAAGTTGAAATGGAATTTGCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig4909:2043..5314+ >mRNA_H-paniculata_contig4909.12074.1 ID=mRNA_H-paniculata_contig4909.12074.1|Name=mRNA_H-paniculata_contig4909.12074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2520bp|location=Sequence derived from alignment at H-paniculata_contig4909:2043..5314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCAACTATCAAGGGTGCATATGAAGCATATAGGCATATATCAACA
TTTCAGTACAGCTGCGGGCACAGGGGGGTTGAGAAGGATTGGTGTAGGTC
AGGGTGGACGACTGTCCGTTCGCTTGCCTAGGGCTACGGCAATTTTGAGG
GTGACTACAGCATGGAGTGACGAATGCGATATAACTGTCTCGAGGGTACC
CTTGAGGATGGTTGCCCTTGGTGACTACAAAGGCGAGCCACCAGATATGA
AGAATATCAATATTGGTGACCTAGCTGACTGTGGACTGAAGGCTGATATA
GATGAAAGTATGCAGCAGATATCTGTCGCAACAGTTGGGGACGAAGGGGG
TGAACAAGAGGCCTACTTCATACAGGCTGTGATTCCGGAGTTTTTTTCTG
TAGACTATTTGGCGACACGCGGCAGTGTTACCATACGCCACAAGTTAAAA
GGAAACTGCCATGTTCACCTTGATGAGGGAGATATCAATGTTGACGTAGT
GCGAGGGGAATCTACGAAACTGGTGACAGGATGCGGTCGTGTTGTTAGTA
AAGAGCTGGAGGGTAATGTGACCATTGCCGCCACGGAGATGATGCAACTA
TCAAGGGTGCATATGAAGCATATAGGCATATATCAACATTTCAGTACAGC
TGCGGGCACAGGGGGGTTGAGAAGGATTGGTGTAGGTCAGGGTGGACGAC
TGTCCGTTCGCTTGCCTAGGGCTACGGCAATTTTGAGGGTGACTACAGCA
TGGAGTGACGAATGCGATATAACTGTCTCGAGGGTACCCTTGAGGATGGT
TGCCCTTGGTGACTACAAAGGCGAGCCACCAGATATGAAGAATATCAATA
TTGGTGACCTAGCTGACTGTGGACTGAAGGCTGATATAGATGAAAGTATG
CAGCAGATATCTGTCGCAACAGTTGGGGACGAAGGGGGTGAACAAGAGGC
CTACTTCATACAGGCTGTGATTCCGGAGTTTTTTTCTGTAGACTATTTGG
CGACACGCGGCAGTGTTACCATACGCCACAAGTTAAAAGGAAACTGCCAT
GTTCACCTTGATGAGGGAGATATCAATGTTGACGTAGTGCGAGGGGAATC
TACGAAACTGGTGACAGGATGCGGTCGTGTTGTTAGTAAAGAGCTGGAGG
GTAATGTGACCATTGCCGCCACGGAGGTGAACGCCAAGCTGGTCAACGGT
GCCAACGTACAAATCGATGCTACCGGAGATAGTTCATCGGTTACGGTTGG
TGGTTTGTATTCATCAGCAGCCCGAATCACGTCGGAGGGAAGGGTTAACG
TTTCAAATTGCCACGGTCGGATTTTGGTCTCGACCATAGGTGCCTTGGGC
GTTGTCACGCTTGCGAGCGTCAACGGCGTTGCTGAAGTATCAACAGGTGA
ACGCCAAGCTGGTCAACGGTGCCAACGTACAAATCGATGCTACCGGAGAT
AGTTCATCGGTTACGGTTGGTGGTTTGTATTCATCAGCAGCCCGAATCAC
GTCGGAGGGAAGGGTTAACGTTTCAAATTGCCACGGTCGGATTTTGGTCT
CGACCATAGGTGCCTTGGGCGTTGTCACGCTTGCGAGCGTCAACGGCGTT
GCTGAAGTATCAACAGGTGGGGGAGATGCAAATATACACGTGGAAGCGCT
CGAAAAGGGTACATGCAGTACCATCAGGTGGGGGAGATGCAAATATACAC
GTGGAAGCGCTCGAAAAGGGTACATGCAGTACCATCAGGTCTGGTCGAGG
CGATATTTTAGTGTCCATGTCCCACGATGTGAGAGCGAGAATTAATTTGG
CAGGAAAGATTGGTGCGCTTCCCTCTGTCTTCGATGGATTGGTACAAGCA
GATAAGGCACAAGGCAGGATTGACTTCCCGAGCATGGCGCAGGGTATCAC
TGTCCGGCAGGACATTGGAGGTGGCAAGATTAATCTTGTTGGGGCTCGAG
AGCAGTCGCTAGATAATTTTTTCGGCCACGATGAACAGAACGCCGTTCTC
CCAAGCCTCAACGTCTCAAGCGAGAAGGGGGGCGTTGGATTGGAAACAGT
GAGTTGGATCGAAAACATTACCCGTAGATTCAATTCGGCACGTGATTCTC
CCGAACAGAGCCAAAGCCACACTCATTGAGTCTGGTCGAGGCGATATTTT
AGTGTCCATGTCCCACGATGTGAGAGCGAGAATTAATTTGGCAGGAAAGA
TTGGTGCGCTTCCCTCTGTCTTCGATGGATTGGTACAAGCAGATAAGGCA
CAAGGCAGGATTGACTTCCCGAGCATGGCGCAGGGTATCACTGTCCGGCA
GGACATTGGAGGTGGCAAGATTAATCTTGTTGGGGCTCGAGAGCAGTCGC
TAGATAATTTTTTCGGCCACGATGAACAGAACGCCGTTCTCCCAAGCCTC
AACGTCTCAAGCGAGAAGGGGGGCGTTGGATTGGAAACAGTGAGTTGGAT
CGAAAACATTACCCGTAGATTCAATTCGGCACGTGATTCTCCCGAACAGA
GCCAAAGCCACACTCATTGA back to top
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