mRNA_H-paniculata_contig4908.12073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4908.12073.1
Unique NamemRNA_H-paniculata_contig4908.12073.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4908.12073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4908contigH-paniculata_contig4908:2819..8695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size325
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930451.780359-CDS-H-paniculata_contig4908:2818..30831622930451.780359-CDS-H-paniculata_contig4908:2818..3083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4908 2819..3083 +
1691481297.7218857-CDS-H-paniculata_contig4908:2818..30831691481297.7218857-CDS-H-paniculata_contig4908:2818..3083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4908 2819..3083 +
1622930451.8098798-CDS-H-paniculata_contig4908:8637..86931622930451.8098798-CDS-H-paniculata_contig4908:8637..8693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4908 8638..8693 +
1691481297.7344763-CDS-H-paniculata_contig4908:8637..86931691481297.7344763-CDS-H-paniculata_contig4908:8637..8693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4908 8638..8693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4908.12073.1prot_H-paniculata_contig4908.12073.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4908 2819..8693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4908.12073.1

>prot_H-paniculata_contig4908.12073.1 ID=prot_H-paniculata_contig4908.12073.1|Name=mRNA_H-paniculata_contig4908.12073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
ALFRVFLARQTARDAMVPLKRKHAIVVMLVLAIPSSAFLVPPPLCASKIA
VSCCRESKMLTSTVNSQRERQQQRRAIYASRPICFSRPDELPEKTLKELD
AADRRLK
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mRNA from alignment at H-paniculata_contig4908:2819..8695+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4908.12073.1 ID=mRNA_H-paniculata_contig4908.12073.1|Name=mRNA_H-paniculata_contig4908.12073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5877bp|location=Sequence derived from alignment at H-paniculata_contig4908:2819..8695+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTGTTTAGAGTGTTCCTTGCAAGACAAACAGCGCGCGACGCCATGGT
TCCTCTGAAGCGCAAACATGCGATCGTGGTCATGCTAGTTTTGGCTATCC
CTTCTTCTGCTTTCCTGGTCCCACCGCCTTTGTGTGCAAGCAAAATCGCT
GTGTCATGTTGCCGTGAGAGCAAAATGCTGACCTCAACTGTCAACTCTCA
GCGAGAGCGGCAGCAGCAACGGCGAGCCATCTACGCTTCGAGACCGATAT
GCTTCAGTAGGCCAGGTACACAGAACGAGCACTTAGTCTTGAGTACATTT
TGATGCCTATGTGTTCGTGCTTAATTCGATCTGGTTGCAGTAGTAAAATT
ACCTACCTATCTGTCTGCTGTAATGCGCTCTTGTTGTGTGCTCGAAAGCT
GCATTATAACAGCAAGTAAGTTGAGCCGATAGTCAGCCAGGTGTCATATA
CTGGACTGAAGTAACCTCTTCTGTCAACCATATGTGATATATCGCAGCAA
CCCTGCCTCTATTATGTCAACCATTTTCCACATACTACAATTACACCTTT
CTTGCAAATTCATGTACTTGTGCATACCTTTCCGCATATGTGCTGTCTCT
GGTTGTCCATTGCCTCTCTTTGTAAAATGTGAGACATCGACCGTGTCGTC
GTAGTGGCTTGCCTAATCGGAACATGCAGGTCGCCTCTGTCCCAGCAGCC
AAGCCGTACTCCAGAAAATCCGTGTATCGTATAGACCACACAGCCAGCGC
CGACTCGATTACCCACCATTATACGATAGTCTGGGCTTTTCCTACAGAGC
GGACGGAGGGGGGTGATGTTGGATTGTGAAGGCGAGAGCAAAAGTGAAGC
ATTCTCTCTCGCCCCCCTTTCGGCACTAATCACAGAATCTCACTGACTTT
TGCACATTGCCGGAAATATCGCATCGGCGATGTGAGTTTATCCTGGTTTG
TAAAAATATGGAAATTTTGCACCTCCTTGGACATATACGAGTACTTGCGA
ACAGTTTTCACAAAAAAACTGAAAGTATTCACCTGAGTTTCAGAATGAAT
AGACACGTTGAATAAGGTACCCACCCTTGTCCATTCGATTTATGAGGTAT
TATTAGCAGTCGTGGATAGTTCGGGGCACATAGAACACACGAGCTCATTC
TGAAACTCCGGCGAATACTTGAATTTTTTTGTGAAAACCATTTGCAAGTA
TTCGTATTTGTGCGGGGGGTGAAATTTTGCCACAGTTGATGTTTGTTCTT
CAGTTATTTCTGCGAGTTTGCGGGCCGAATAAAACTGTTACACCGATCCC
TATCCCTACGCCTACCCTTTACATTAGTCATTGGAGTGTCAAATCTGATC
CCAGTAGCATCTACAATCGGTCAGACGCTGCCACTTCTCGGCGTGACGAC
CACCATAGTGAAACGTCCTGGAGCCAGGTTGGACAGTTTGGGCAGCTTCG
GGTAGTACATGGCAGCAAAATCTAGTAAACCAAAATCAACCAGTTTTTTA
CGACCAATAGGGGTAAACTCTACTGGCATCGGCCGAATAGCCAGCGTTGA
TTCAATGATATATCTGTATGCCATAGCCCGCGCTCTCTGTAGATCGGCAG
TGGTGTTGCAAATAGTACCGGATGACATCGTGATTGCTTTCTTCGCCACG
ACGTTCCCATATTTATCGTATTGAGTGTCGCACGACATTTCGCTACGATC
ATGTTTCAGTTGTTTTACTAGTCATGTTCCAGATTTGTATCGTACAGGAT
TACAATATCAGGTGGCGCTGCCATGCGTATGGGAAATTTCACATGAGACA
AGCCAATCATAGCGCAGTATTTACATAAGAAATGGTCCATGACTCATGGC
AGCTCGCACAGCTTTTGGGTTCACAGCCATGGCGGCTGCTACTTCTCTTT
CTGCGCAGTATTGTCGTATCTTCGTTTTATTCGCGTGCTGTTCATATCAG
CTTAACGGCAACGGCATGGACCTGTCGTGATTGGGCTTGTACTGGCCTGT
ACGTGCGCCATTCGTGCGGAAGATGACGGCGGTGCTGCTGCGCACCGAGG
TGTAGGGGTTTGTGCTGCCGCGCCAACAGCCCTCACCGAGACACCAGTAG
TAGGGGATCGGGAAGCAGCAGGAAACGAGAAAAGGAGGAGGACCAAGTGC
AGTACCGTGCACTCTCTTCCTCTGTCTTCTGAAAAGGGCGTCCCGTTGAT
GAAATTTACGTTACATCATTACTCTGTCTTTCTGTGCCATCGATGTCGCC
ATTTGGTGAACTACGGCATCCAGCTACATGAAGCGGCAATCACGAGGTAG
CCGACGTGAATGTCACCCCCACTTGTAAATCGGATTTATTGGAGTCAATA
ACACTACCGGGGTAGAGAATGAAGTTTATCACTATAAGAAAAGTGTTGCC
TTCTATCATACTAGTTATTTTCCATTAAACCCAATCTTCGGGGTGCAGAT
CCCTGTGGTCGAGGTGCTGTTATTTTTTTATATTGGTCAGCAGGCTGCCC
TCGCACACTTTAAAATGAACGAGATGTTTTGTAGTAAATTGGTGCTTCGC
ACGCACTCCTTCGTAATGGGTTCACATGCCTTTCGCACTGAGAATCAAGC
GTAAGTGGCTGAACAGAAACTATTGCTACAGTCGAGAGCATTCCAACAAA
TCTGACCTTGGGGGGAAACTCGAAGTACCTGTCGAGAAATATCATACTGG
CCGACCTCCTGCTAGTGATGAAAAAACGAAGCTAAACGGCTGCTCGCTAC
GGACCCATAACTCGCTTTGTTGGCGTACATTCTTTCTAATCTTTAAATAT
CATCATAAGACTCATATGCATGAGGGTTGGAGCTCAACACTGTATCGAAA
CATATTTCGATACAGTATTGCGATATTTTGTACAACGTTTCGTAACCATT
ATCGGAACAACTAATAAAAAGAGTAAAACATCAAATTATCACGCACTTTC
GTATAAATCAGAACAAGTTATGTGTCTTCTAAGTGGAAGTTTGTCCTGGA
ATTGGATACGTTGGGGGCAAGTGTTCTACAATGGTTGATGTTCTGACAAC
GTCTGGGCAAGTCGTTCTAAATCGATCGTATATCTTGAACAACGTTTCCG
GGGCTGTTCTTTACTTGGCAAAGATGAGCCTTCTGCGCGTGAATTCCTTT
CCGCACTCGTCTATCAGGGCAGGGGTCACGCCCTCGTAGCACGCGCCGTC
AAGTCCATGCCATCCATGCCACTGCATGTCTGAACAGGGACGTACCTGGT
TCCCTTATCTGGTCTAATGTACAAAAAAGACTGTTGATCTGAAGCCATGG
TCGAGTATCAAACTCAGCGTTTTCCCTTTAAGTGTGCAAGCATCCTCCCG
TGTGTTTGACTGACATGCATCAAGTCGCCCGAATGTACACCTTTAGCGAC
CTACTAATAGAGCCTGCTTCATACCCTCCTGACCCATACTAGCAGTATTC
CATTGGATCAGTCGGGCTAGGGTTTAAGGTCAAAGTTCAACGTTGATTTT
ACTGAGTCGGGGGCACCACCATAAATTCCTAAGATCACGAACCAATCGAA
ACAAGTGCCAACCATAGTCTTACCAAAGCGGTAAAATCCGGTGAAAGCTG
TAAGCGGAGCTGCAATTTACTGGGCCGAAAGTGCCGTATAGCTGTCCGTG
TCTCTTGTTCGGAACCCTTGCTACAGAGGGATTCGTGGGCTTTTACTTGT
CGCAGCAGTACAAGCAACAACACTCCATGTAACGGTTTTTCCCTTAGCCC
CGAGTTTCTCTCCAGAAGGATCTCTCTCTGTCTCTACATTGTCGAAAGAA
AGAGCACGTCTATCAAACGATAGGTCTCGACGAGATCATGTCCAATGACA
CAGCTTTTCCATTGCAACTATCTCGAACTATCATTATTTGTCTTGGGTAA
ACACCTATTTATTCGTGTACAAGTCTACGAATGGTAACTATAGATGGTCA
CCAGGTGGTAAAAATACCCGGCGAACAGTCACACGTACAGATCCGGTTTA
TTTTCCGGATGGTACTGTACAGGTTGAATACTCAATCTGCCTGAGCTTTT
CGATGCCCCGTGATGTATCGAGTACACTGCATATTATTCGCGTCACCTGG
ACATCTTCCCCGCTCAAACAGACATAATAGTCATTCCAGATTTCTCGTAT
TTATTGGTATCATGTGTTCGTATTTGTCCGGGAGGTAAAAAGTTTGCACT
GTCGACGACACACTTGCTCACGCTGTGTACTCGAAAGCTATACATCGGCA
AGGGAAAACGCGATGTAAACCTGGAGGTAGGTATTGATTATCTCGATAAC
TATAGGTTGGAACTACTGATGACGAGCAGTGTGCGTTTAAAAGATTCTGC
GGAGACCTGTCTATCTATCTGCCTGTCTACTGACGGGTTCTTCTTTCGAC
CGCTAAGGGTTCCGCTCTCGATTATTATTTACTATTATTGGTACATTAGC
CCGATCCCTCAGACCCGTGGGCGCAGGGTAACTGGCGATCCGGTCGAATT
GCAAAAGTATACCGTAAGAAAAATGAATAGTAAAAAAAGAGCATAACTCG
AATAATGGAAAATAAAATCAGGACAAAAACCCCTTCAAAAGGTGAGCAAA
CACACGAAACAAAACAATGACCCAAGGCAAAGGAATAGACGAATTATTCG
CGTACAAAAAAAAAAAAAAAAATGTCGCTCAACCTGGTGCGTTAAAACTG
TAGATTTCGTGTTTAGGCACCAACTGTAACATTCTCTAGATTTCTAGTAT
CAAGTAGAGCACAGGACCGACGACGTGGAAAGATGAAATTGTTTTTGTTT
TGGGCGAGGTTCACAACCGTATTTTTCAACGTTTTTGAACATATATTTTA
ATAAAGCTCGTGCAGGGCTACAAGGTTCATTATAGCACGATTTCTTAGCA
CAAAGTTTTTCTCTCGTCAATTTTAGGTTTTTGAGACTCGATTTTTTTTT
TTTTTTTGCAGCTGAGAACACGATGCTCCCACGGGAGAAAGTGGCTATCG
AGTGGACACCTTCAGCTCTGCGGGTTGGTTCCAGGTCTTGGGATGTAGTG
CGGAGTACGTCCTTGCGTTTTGTTATGTTGTAGATGGACTGGCCATCTGT
GGTCGGACACAGATAGAAAAGCTGTTCCGAGAAAGGGTCTAATATGCCGT
TGGTTGTTGTGCAGGGAGGGCGGAGTTGGGGAACCCCGGACGAGAGACCA
CTCCATTCCTATTTTGCAGTATGTAATGCCTATTTCGGCACGGAAAGAGG
ATGACTCCCCATAAGTAGATCCCAGAAAATAGATTTTCGAAGTGTGTTGG
TCCTCCATGGGTTAACCTGCATTTCTGATCATATCAAACGTTTAATGGAT
GATGTTACGCTTTGATATTTTAATATACTCATATATACCTACGTGTTTCG
GCTGCCGATCAACCCGCAAAATAAAACAACGACTACACCTAGGTGAGCAT
AAAGTTAATTCGATGAATCCGGAAATTTTGACTGAGAAATAAAAACGGTT
ACAGTAGTATACTAATAGATGGCATGTACTTGAACGTTAACTTTACAATT
CTGATTCTATCAGACGTTCACTGACTGGTGTGCACTTTTTTGTGCTTTCA
ATTATTTCCAATATTATACGTACACGTGGTGACAACCACTATGTGTGGTT
TTTGCTTCTTTTTTTTTTTTAATTCGTCTACTCGGACACAAACCGGTGTG
TATCAAAATCAACTTTTTTTTTTTAACAGCAAACAACAACAATGGGAGAT
CCGTAGGCCTCCCCTCCCACCCGTCGTCGTCCTACTCGCCCTACTCCTCC
CGGCTCCACCTGCGAAGAGATGAGCTACCGGAGAAAACGCTGAAGGAACT
AGACGCCGCAGACCGGCGCTTGAAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4908:2819..8695+

>mRNA_H-paniculata_contig4908.12073.1 ID=mRNA_H-paniculata_contig4908.12073.1|Name=mRNA_H-paniculata_contig4908.12073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig4908:2819..8695+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTGTTTAGAGTGTTCCTTGCAAGACAAACAGCGCGCGACGCCATGGT
TCCTCTGAAGCGCAAACATGCGATCGTGGTCATGCTAGTTTTGGCTATCC
CTTCTTCTGCTTTCCTGGTCCCACCGCCTTTGTGTGCAAGCAAAATCGCT
GTGTCATGTTGCCGTGAGAGCAAAATGCTGACCTCAACTGTCAACTCTCA
GCGAGAGCGGCAGCAGCAACGGCGAGCCATCTACGCTTCGAGACCGATAT
GCTTCAGTAGGCCAGGCGCTGTTTAGAGTGTTCCTTGCAAGACAAACAGC
GCGCGACGCCATGGTTCCTCTGAAGCGCAAACATGCGATCGTGGTCATGC
TAGTTTTGGCTATCCCTTCTTCTGCTTTCCTGGTCCCACCGCCTTTGTGT
GCAAGCAAAATCGCTGTGTCATGTTGCCGTGAGAGCAAAATGCTGACCTC
AACTGTCAACTCTCAGCGAGAGCGGCAGCAGCAACGGCGAGCCATCTACG
CTTCGAGACCGATATGCTTCAGTAGGCCAGATGAGCTACCGGAGAAAACG
CTGAAGGAACTAGACGCCGCAGACCGGCGCTTGAAGATGAGCTACCGGAG
AAAACGCTGAAGGAACTAGACGCCGCAGACCGGCGCTTGAAG
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