mRNA_H-paniculata_contig4903.12066.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4903.12066.1
Unique NamemRNA_H-paniculata_contig4903.12066.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4903.12066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4903contigH-paniculata_contig4903:107..1326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930450.7099502-CDS-H-paniculata_contig4903:106..2801622930450.7099502-CDS-H-paniculata_contig4903:106..280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4903 107..280 -
1691481297.2209377-CDS-H-paniculata_contig4903:106..2801691481297.2209377-CDS-H-paniculata_contig4903:106..280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4903 107..280 -
1622930450.7311559-CDS-H-paniculata_contig4903:960..13261622930450.7311559-CDS-H-paniculata_contig4903:960..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4903 961..1326 -
1691481297.2310543-CDS-H-paniculata_contig4903:960..13261691481297.2310543-CDS-H-paniculata_contig4903:960..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4903 961..1326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4903.12066.1prot_H-paniculata_contig4903.12066.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4903 107..1326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4903.12066.1

>prot_H-paniculata_contig4903.12066.1 ID=prot_H-paniculata_contig4903.12066.1|Name=mRNA_H-paniculata_contig4903.12066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
QKAWITLITNYKGMRLKIVMSTESPSEAWRKLQKHYRASGLKEKSRLLRE
FNSLRMEPGEESTKFFLPVGRVANDLERLGRTVDEDDRNMAIVNRLLPEY
DVEMRMIESSDDTPNRARIETILKDLGDARYYLGCHIIRDRKNRRIRIDQ
HLYTRSMAERFGTTKTNMLPVTAGNNTMIK
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mRNA from alignment at H-paniculata_contig4903:107..1326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4903.12066.1 ID=mRNA_H-paniculata_contig4903.12066.1|Name=mRNA_H-paniculata_contig4903.12066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1220bp|location=Sequence derived from alignment at H-paniculata_contig4903:107..1326- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAAGCGTGGATCACGCTAATCACGAACTACAAAGGCATGCGGTTGAA
GATCGTCATGAGCACCGAGTCGCCGAGTGAGGCGTGGAGGAAGCTCCAAA
AGCACTACCGCGCTAGCGGCCTCAAAGAGAAGTCACGTCTACTGCGCGAA
TTTAACTCCCTCAGGATGGAGCCTGGGGAAGAATCCACAAAATTCTTTTT
GCCGGTGGGCCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGACCGTCG
ACGAAGATGACAGGAATATGGCGATAGTGAACAGGCTATTACCAGAGTAT
GACGTTGAGATGAGAATGATCGAGAGCAGCGATGACACGCCAAATAGAGC
GCGCATCGAAACAATAGTCGCAAACCAGTATAACGGGCTTCAGGAACAGA
AACTCGAGACCGGAGCAAAGACACTGGCGGTCATGATGAAAGGTACAGCG
AAAACTTGCCAGGTGTGCCACAAACTTGGGCACACAGCTCCTCAATGCAG
GGGGGGTCGAAGGGCATTCTCGAACATCAAGGAAAAGTTCAACGGCAATT
GCACCCACTGCGGGAAACATAGACATCGCCGTGATGATTGCTGGGGCGCC
AAAGGGGACGATAAAAGAAATAAGAAAAAGGATCGAGGCCTATGCTGGGT
GTGCGGCAGCTCAGAGCACATCGCGAGACGGTGCCCGAAGCGTTACCACG
AAACCGACGAAGGGGAAACAGCGCTCGTGGCTACCATAAGAGGGCCCAAG
GCAATTACAGCCGTAACTGACGATCGCAATACAACAGAAACCCTGCCGTG
ACCGGAGAGAAGGAACACTGGAACTCAGACACCGGCGCGACAGACTACAT
GACGTCGGATGAGATTGTGTTCGAGGACTACACTCCAGCACTCCCGGGGA
CCAAGTGTGAAATCGCCAACACGGCATTCGTGCCGGTGGCGGGGTGGAGA
CGCCTTGTGCTTCTAGTAAGTTAACCGGGGGGAAAATCACGGGTAGCACT
GTTAAACAGGGTTGCCCACGTAGCAGACCTGCGATCGGATCACAAGCTCA
AAGACCTGGGAGATGCAAGGTACTATTTAGGATGCCATATCATCCGCGAT
AGGAAAAATAGGAGGATCAGGATTGACCAGCACCTCTACACGAGGTCCAT
GGCCGAGCGTTTCGGGACAACCAAGACCAATATGCTCCCGGTCACGGCGG
GAAACAATACCATGATAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4903:107..1326-

>mRNA_H-paniculata_contig4903.12066.1 ID=mRNA_H-paniculata_contig4903.12066.1|Name=mRNA_H-paniculata_contig4903.12066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig4903:107..1326- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAAGCGTGGATCACGCTAATCACGAACTACAAAGGCATGCGGTTGAA
GATCGTCATGAGCACCGAGTCGCCGAGTGAGGCGTGGAGGAAGCTCCAAA
AGCACTACCGCGCTAGCGGCCTCAAAGAGAAGTCACGTCTACTGCGCGAA
TTTAACTCCCTCAGGATGGAGCCTGGGGAAGAATCCACAAAATTCTTTTT
GCCGGTGGGCCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGACCGTCG
ACGAAGATGACAGGAATATGGCGATAGTGAACAGGCTATTACCAGAGTAT
GACGTTGAGATGAGAATGATCGAGAGCAGCGATGACACGCCAAATAGAGC
GCGCATCGAAACAATACAAAAAGCGTGGATCACGCTAATCACGAACTACA
AAGGCATGCGGTTGAAGATCGTCATGAGCACCGAGTCGCCGAGTGAGGCG
TGGAGGAAGCTCCAAAAGCACTACCGCGCTAGCGGCCTCAAAGAGAAGTC
ACGTCTACTGCGCGAATTTAACTCCCTCAGGATGGAGCCTGGGGAAGAAT
CCACAAAATTCTTTTTGCCGGTGGGCCGGGTCGCCAATGACTTGGAGCGG
CTTGGGAGGACCGTCGACGAAGATGACAGGAATATGGCGATAGTGAACAG
GCTATTACCAGAGTATGACGTTGAGATGAGAATGATCGAGAGCAGCGATG
ACACGCCAAATAGAGCGCGCATCGAAACAATACTCAAAGACCTGGGAGAT
GCAAGGTACTATTTAGGATGCCATATCATCCGCGATAGGAAAAATAGGAG
GATCAGGATTGACCAGCACCTCTACACGAGGTCCATGGCCGAGCGTTTCG
GGACAACCAAGACCAATATGCTCCCGGTCACGGCGGGAAACAATACCATG
ATAAAACTCAAAGACCTGGGAGATGCAAGGTACTATTTAGGATGCCATAT
CATCCGCGATAGGAAAAATAGGAGGATCAGGATTGACCAGCACCTCTACA
CGAGGTCCATGGCCGAGCGTTTCGGGACAACCAAGACCAATATGCTCCCG
GTCACGGCGGGAAACAATACCATGATAAAA
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