mRNA_H-paniculata_contig49.12057.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49.12057.1
Unique NamemRNA_H-paniculata_contig49.12057.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: D7G8U9_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U9_ECTSI)

HSP 1 Score: 432 bits (1112), Expect = 4.310e-133
Identity = 292/649 (44.99%), Postives = 365/649 (56.24%), Query Frame = 1 
Query:    1 LDELTEVGAKVSDRLRHVLLATGPIKTEAVALREELFHIKNTKDKYTDSDKINGIRQRFLTKFLQVRLVEVQKSAQNRLEALEAETIELEAKERRNTRLLRQTERELMPLGRGTVEKVKIMRNARLRKTLRCERSGATSIQRVFRGWRVRKALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISLFERDD---ESIRPGTGQSSRSKHGDDDEVERNTSSRFSQRLKQLTVEAEQAAREESRQLRLAVA------------VGDRVDDSG-----------------WTLVTTGDDCRLPTAAATS--CWYHALTSEYYWGDDPPPNPVRLALTARTRSSATAIRILGLSPGVDGKHSFGEAFSGRQECLKVGISA----------SVIRPSFALS--DRAEGENWLQRQDISSLLRESETLRDIGPAGWCQLRVSIAPESP-RDVAEGAILSASAS--------KFTTDTEPGTAANSAIT-LTGKASTGKLNPENPAQDAPGTPILESGGKSGTTPSAAQPFCLTFFYNRKTETVRWSLSPRSAL-ETPRTPRREAYRANHNAS----LDSNLRVSEVDGAEEAG-------------------SGTDWERVEDGDMVFYYNRSMGISSWEPPAAWDVGG 1707
            LDELT+  AK+S+R R V+ A  P++ E V +REELFHI++T DKYTDSDKING RQRFLTKFLQVRLVE++ + + RLE L+AETIE+E KER NTR+LRQTEREL+PLG+GTVEKVK++R ARLRK  R ERSG+ +IQR+FRGWRVR+A+ SWYRDYWIE+ED ATGDVYYVNTWNQE+RWVKPLEISLFE       + RPGT  SS+    D++      SSRF +RL +LT EA +AA EE R LR  VA              +  D+ G                 W  V+T     LP+   T   CWY A TSEY+WG +PP   +         S+         + G  G  S G   +   E +  G +A          +V+ P   L   DRA GE WL+ QD+  LL  SE + DIG AGWCQL+ ++  E+    VAE   +    S        K  +   P  A  +A   + G A+ G++ P+             SGG S + P        TFF++ +    RW LSPRSAL  TPRTPRREA +A   A+     DS    S V G +E                     SG  WE VED DMVFYYN+ +GIS+WEPP  W  GG
Sbjct:  898 LDELTQNAAKLSERQRFVVTAVEPLRAEHVTIREELFHIRHTTDKYTDSDKINGCRQRFLTKFLQVRLVELKANVEERLEKLDAETIEIEVKERHNTRVLRQTERELIPLGKGTVEKVKLLRTARLRKKARSERSGSITIQRIFRGWRVRRAINSWYRDYWIESEDAATGDVYYVNTWNQEIRWVKPLEISLFEESSGGGATNRPGTANSSKDSDADEELGVDTVSSRFRKRLVELTGEATRAAEEEERFLRHVVANIATISASYSITKSNGGDEKGVESAADQTLLALAAAREWGFVSTDSRFSLPSPGTTKNKCWYRAKTSEYFWGGNPPLLGLLPCFPENMGSNEGNPG--SFAGGSGGGGSVGTHSTLGNEGVAAGGTAEGGAGSPDGVAVVHPELGLVFVDRASGEAWLKTQDLGLLLNRSEKVCDIGRAGWCQLKAAVPTEAAFAAVAEDGFVRGGGSACKEGGTVKGPSGDSPRAATPAAAAEVDGTATAGEVVPD----------ASRSGGSSTSRP------LFTFFHHAQMGEARWCLSPRSALLATPRTPRREASQARLAAAGAQGWDSE-NTSGVGGNDEQSFAATDLGASALTTGHSNDESGDGWEVVEDADMVFYYNQRLGISTWEPPPGWAQGG 1527
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BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: A0A6H5KKL6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL6_9PHAE)

HSP 1 Score: 410 bits (1053), Expect = 2.550e-125
Identity = 281/659 (42.64%), Postives = 355/659 (53.87%), Query Frame = 1 
Query:    1 LDELTEVGAKVSDRLRHVLLATGPIKTEAVALREELFHIKNTKDKYTDSDKINGIRQRFLTKFLQVRLVEVQKSAQNRLEALEAETIELEAKERRNTRLLRQTERELMPLGRGTVEKVKIMRNARLRK--------------------TLRCERSGATSIQRVFRGWRVRKALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISLFERDDESI--RPGTGQSSRSKHGDDDEVERNTSSRFSQRLKQLTVEAEQAAREESRQLRLAVAVGDRV------------DDSG-----------------WTLVTTGDDCRLPTAAATS--CWYHALTSEYYWGDDPPPNPVRLALTARTRSSATAIRILGLSPGVDGKHSFGEAFSGRQECL-KVGISA--------------SVIRPSFALS--DRAEGENWLQRQDISSLLRESETLRDIGPAGWCQLRVSIAPESP-RDVAEGAILSASASKFTTDTEPGTAANSAITLTGKASTGKLNPENPAQDAPGTPILESGGKSGTTPSAAQPFCLTFFYNRKTETVRWSLSPRSAL-ETPRTPRREAYRA---NHNASLDSNLRVSEVDGAEEAG-------------------SGTDWERVEDGDMVFYYNRSMGISSWEPPAAW 1695
            LDELT   AK+S+R R V  A  P++ E VA+REELFHI++T DKYTDSDK+NG RQRFLTKFLQVRLVE++ + + RLE L+AE IE+E KER NTR+LRQTEREL+PLG+GTVEKVK++R ARLRK                    T R ERSG+ +IQR+FRGWRVR+A+ SWYRDYWIE+ED ATGDVYYVNTWNQE+RWVKPLEISLFE        RPGT   S+     ++      SSRF +RL +LT EA +AA EE R LR  VA    +            D+ G                 W  V+T     LP+   T   CWY   TS+Y+WG +PP   +         S          +PG     S G    G    L   G+ A              +V+ P   L   DRA GE WL+ QD+  LL+ SE + DIG AGWCQL+ ++  E+    VAE  I+  + S     ++ G      + +  +A+T     E       G  + ++   +G+  S  +P   TFF++ +    RW LSPRSAL  TPRTPRREA  A   +  A    +   S V G +E                     SG  WE VEDGDMVFYYN  + IS+WEPP  W
Sbjct:  777 LDELTHNAAKLSERQRFVATAVKPLRAEHVAIREELFHIRHTTDKYTDSDKVNGCRQRFLTKFLQVRLVELKANVEERLEKLDAEAIEIEVKERHNTRVLRQTERELIPLGKGTVEKVKLLRTARLRKKVSDSIAFASTDIALGNEHTTARSERSGSITIQRIFRGWRVRRAINSWYRDYWIESEDAATGDVYYVNTWNQEIRWVKPLEISLFEESSGGATNRPGTANPSKDSDAGEELGVDTVSSRFRKRLVELTGEATRAAEEEERFLRHVVANIATISASYGIAKSKGGDEKGAESAADQTLLALAAAREWRFVSTDSRFSLPSPGTTKNKCWYREKTSDYFWGGNPPLLGLLPFFPENVESHEG-------NPGSSAGRSGGGGSVGTHSTLGNEGVVAGGTAEGGAGPPDAVAVVHPELGLVFVDRASGEAWLKTQDLGLLLKRSEKVCDIGRAGWCQLKAAVPSETAFAAVAEDGIVRGAGST----SKKGGTVKGPLGVIPRAATAATTAEVGGAATAGGAVPDASRSAGS--STPRPL-FTFFHHAQLGEARWCLSPRSALLATPRTPRREASHARLASAGAQGWDSENTSGVGGNDEHSFAATGLGASAFTTVHSNGESGDGWEVVEDGDMVFYYNERLRISTWEPPPGW 1421
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BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.670e-47
Identity = 104/185 (56.22%), Postives = 133/185 (71.89%), Query Frame = 1 
Query:   34 SDRLRHVLLATGPIKTEAVALREELFHIKNTKDKYTDSDKINGIRQRFLTKFLQVRLVEVQKSAQNRLEALEAETIELEAKERRNT-RLLRQTERELMPLGRGTVEKVKIMRNARLRKTLRCERSGATSIQRVFRGWRVRKALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISLFER 585
            S  LR       P +  A AL EEL H   TKD YTDSDK++G+ QRFLTKFLQVRL E++ ++  +L+ALE  + E +AK+ R+T RLLRQ  +EL  +G G  +KV++ R+ R+R+ +R ER  AT+IQR FRGWRVR+A+ SW RDYW+  ED ATGD+YY NTW+QE RW KPLEISLFER
Sbjct:  895 SAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALE-HSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFER 1078
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BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: A0A7S2RT07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RT07_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.320e-33
Identity = 78/191 (40.84%), Postives = 115/191 (60.21%), Query Frame = 1 
Query:    4 DELTEVGAKVSDRLRHVLLATGPIKTEAVALREELFHIKNTKDKYTDSDKINGIRQRFLTKFLQVRLVEVQKSAQNRLEALEAETIELEAKERRNTRLLRQTERELMPLGRGTVEKVKIMRNARLRKTLRCERSGATSIQRVFRGWRVRKALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISL 576
            +EL +   K++   + +  A    + +   LREEL  + +   K+ D+ +I G  QRFLT++L+VR+ E     + ++   +    EL  + R+  R++RQ  REL PL RG   K K  R  RLR  +R E+  +T+IQR FRG R+R+AL SWYRDYW E  D  TGD Y+ NTW++EVRW +PLE++L
Sbjct:   22 EELVQEKKKLAADAQRLKNALEAARKDTDDLREELETMLSVTHKHWDTSRITGTPQRFLTEYLKVRMAEQLAEKEAQIAQDKDRYNELVVQARQRERMIRQVRRELEPLTRGMAVKTKRDRIVRLRNRVRLEKWASTTIQRHFRGHRLRQALFSWYRDYWTEVNDDTTGDTYFYNTWSEEVRWTRPLEMTL 212
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BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: A0A7S1XIS4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XIS4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.210e-19
Identity = 61/131 (46.56%), Postives = 78/131 (59.54%), Query Frame = 1 
Query:   94 LREELFHIKNTKDKYTDSDKI-NGIRQRFLTKFLQVRLVEVQKSAQNRLEALEAETIELEAKERRNTRLLRQTERELMPLGRGTVEKVKIMRNARLRKTLRCERSGATSIQRVFRGWRVRKALLSWYRDYW 483
            +  EL  I  TK KY DS ++  G+RQR+LT FLQ RL E     + R         +  A +R N RLLR  +RE++PL RG V K K  R+ARLR  +R E +GA  +QRVFRG R R A+ +W RDYW
Sbjct:  136 IERELKIIAATKSKYWDSSRVVAGVRQRYLTSFLQARLREQLDEFKTRHREATRSRDKGTADQRANKRLLRAVDREIIPLTRGVVRKTKRERSARLRHKVRSEHAGAVGMQRVFRGHRARSAIFAWTRDYW 266
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BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: A0A7S2FNT3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNT3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.190e-17
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  412 TSIQRVFRGWRVRKALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISLFERDDESI 600
            T IQR FRG R+R AL SWYRDYWIE  D+ TGDVY+ NTW++EVRW KPLE++L    D+ +
Sbjct:    1 TLIQRCFRGMRLRGALFSWYRDYWIEVVDETTGDVYFYNTWSEEVRWAKPLEMTLLATSDQPV 63
[Close]
BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: A0A7S1XR48_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR48_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.880e-15
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  388 LRCERSGATSIQRVFRGWRVRKALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISLFE 582
            +R E +GA  +QRVFRG R R A+ +W RDYW+  ED ATGD+YY N+W++EV W KPL+++  E
Sbjct:    1 VRSEHAGAVGMQRVFRGHRARSAIFAWTRDYWVPMEDDATGDLYYYNSWSEEVMWYKPLQMTYSE 65
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BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: A0A6G0XPV4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.700e-15
Identity = 71/191 (37.17%), Postives = 103/191 (53.93%), Query Frame = 1 
Query:   10 LTEVGAKVSDRLRHVLLATGPIKTEAVALREELFHIKNTKDKYTDSDKINGIRQRFLTKFLQVRLVEVQKSAQNRLEALEAETIELEAKERRNT-RLLRQTERELMPLGRGTVEKVKIMRNARLRKTLRCERSGATSIQRVFRGWRVRKALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISLF 579
            + E+ AK+ D LR  L      + +   L EEL      K K+ DS +I G++QR+LT++LQV+L + Q  A+    A+E   +EL   E     + LR  +REL PL  G   + +  R  RL+  +R E+  AT IQR FRG+RVR A+     + WIE  D  +   YY N  +QE R V+PL + +F
Sbjct:  831 VAELSAKI-DGLRRTLSQN---QADEALLTEELDKTMTIKSKFHDSARITGVKQRYLTRYLQVQLAD-QLQAKRLAIAVETRNLELTVGECNEAEKSLRFAKRELQPLTEGVERQTREARVKRLQTKVRREKKAATVIQRHFRGFRVRAAVGE-AANRWIELFDPVSHRPYYYNARSQERRRVRPLAMDIF 1015
[Close]
BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: A0A8K1FG11_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FG11_PYTOL)

HSP 1 Score: 89.0 bits (219), Expect = 1.190e-14
Identity = 72/193 (37.31%), Postives = 98/193 (50.78%), Query Frame = 1 
Query:   13 TEVGAKVSDRLRHVLLATGPIKTEA---VALREELFHIKNTKDKYTDSDKINGIRQRFLTKFLQVRLVEVQKSAQNRLEALEAETIELEAKERRNTRLLRQTERELMPLGRGTVEKVKIMRNARLRKTLRCERSGATSIQRVFRGWRVRKALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISLFE 582
            T + A V+D    V      IK +      L  EL      K KY DS +I G  QR+LT++LQV+L +  ++ +  L         L  +     + LR  +REL PL  G V K +  R   L+  +R ER  AT+IQRVFRG+RVR A+     + WIE      G VYY NT+  E RW KPL +S+F+
Sbjct:  812 TRLAALVNDLGDRVASLERQIKEDEDDETKLTLELEKTMQIKTKYHDSSRITGTPQRYLTQYLQVQLADRLRAKRMELAMANRALETLLTQFNDAQKQLRAVKRELEPLTDGVVRKTRENRTTHLQVQVRRERVAATTIQRVFRGYRVRSAVREG-ANCWIEGV--TDGRVYYYNTFTGESRWNKPLAMSIFQ 1001
[Close]
BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Match: A0A833T5B2_PHYIN (Putative WW domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T5B2_PHYIN)

HSP 1 Score: 79.3 bits (194), Expect = 1.220e-11
Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 1 
Query:  133 KYTDSDKINGIRQRFLTKFLQVRLVEVQKSAQNRLEALEAETIELEAKERRNT-RLLRQTERELMPLGRGTVEKVKIMRNARLRKTLRCERSGATSIQRVFRGWRVRKALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISLFERDDESIRPGTG 615
            KY DS +I G  QR+LT++LQV+L +  ++ +  + AL+ +  E       +T + LR   R+L PL +G ++K +  R  RL+  +R ER  A +IQR+FRG+RVR A+     + WI+      G  Y+ N      RW +PL + +F   DE   P TG
Sbjct:  875 KYHDSSRITGTPQRYLTQYLQVQLADQLRAKRTEI-ALDEQVFETLTTNLSDTQKQLRGIRRQLEPLTQGVIKKTRENRVKRLQDKVRHERRAAITIQRLFRGFRVRAAVREG-GNCWIQMVSPDNGRPYFYNVLTGATRWHRPLAMDIFR--DEFAEPMTG 1032
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49.12057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G8U9_ECTSI4.310e-13344.99Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A6H5KKL6_9PHAE2.550e-12542.64WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CGM1_9STRA5.670e-4756.22WW domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2RT07_9STRA4.320e-3340.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1XIS4_9STRA4.210e-1946.56Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2FNT3_9STRA2.190e-1761.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1XR48_9STRA5.880e-1553.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0XPV4_9STRA8.700e-1537.17Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1FG11_PYTOL1.190e-1437.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A833T5B2_PHYIN1.220e-1135.80Putative WW domain-containing protein n=2 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49contigH-paniculata_contig49:49757..55220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.5
Seed ortholog evalue2.4e-120
Seed eggNOG ortholog2880.D7G8U9
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
EggNOG free text desc.F-box LRR-repeat protein
EggNOG OGsKOG1947@1,KOG1947@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat calmodulin binding protein
Ec32 orthologEc-15_004330.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons7
Model size1713
Cds size1713
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930448.1291428-CDS-H-paniculata_contig49:49756..499091622930448.1291428-CDS-H-paniculata_contig49:49756..49909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 49757..49909 +
1691481296.6563437-CDS-H-paniculata_contig49:49756..499091691481296.6563437-CDS-H-paniculata_contig49:49756..49909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 49757..49909 +
1622930448.1426022-CDS-H-paniculata_contig49:50804..509211622930448.1426022-CDS-H-paniculata_contig49:50804..50921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 50805..50921 +
1691481296.667607-CDS-H-paniculata_contig49:50804..509211691481296.667607-CDS-H-paniculata_contig49:50804..50921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 50805..50921 +
1622930448.155583-CDS-H-paniculata_contig49:51411..515281622930448.155583-CDS-H-paniculata_contig49:51411..51528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 51412..51528 +
1691481296.6764882-CDS-H-paniculata_contig49:51411..515281691481296.6764882-CDS-H-paniculata_contig49:51411..51528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 51412..51528 +
1622930448.1680062-CDS-H-paniculata_contig49:52171..522791622930448.1680062-CDS-H-paniculata_contig49:52171..52279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 52172..52279 +
1691481296.6859806-CDS-H-paniculata_contig49:52171..522791691481296.6859806-CDS-H-paniculata_contig49:52171..52279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 52172..52279 +
1622930448.183211-CDS-H-paniculata_contig49:53186..533621622930448.183211-CDS-H-paniculata_contig49:53186..53362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 53187..53362 +
1691481296.6964939-CDS-H-paniculata_contig49:53186..533621691481296.6964939-CDS-H-paniculata_contig49:53186..53362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 53187..53362 +
1622930448.1960835-CDS-H-paniculata_contig49:53822..542081622930448.1960835-CDS-H-paniculata_contig49:53822..54208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 53823..54208 +
1691481296.7085052-CDS-H-paniculata_contig49:53822..542081691481296.7085052-CDS-H-paniculata_contig49:53822..54208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 53823..54208 +
1622930448.2106683-CDS-H-paniculata_contig49:54564..552201622930448.2106683-CDS-H-paniculata_contig49:54564..55220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 54565..55220 +
1691481296.7165189-CDS-H-paniculata_contig49:54564..552201691481296.7165189-CDS-H-paniculata_contig49:54564..55220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49 54565..55220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49.12057.1prot_H-paniculata_contig49.12057.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49 49757..55220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49.12057.1

>prot_H-paniculata_contig49.12057.1 ID=prot_H-paniculata_contig49.12057.1|Name=mRNA_H-paniculata_contig49.12057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=571bp
LDELTEVGAKVSDRLRHVLLATGPIKTEAVALREELFHIKNTKDKYTDSD
KINGIRQRFLTKFLQVRLVEVQKSAQNRLEALEAETIELEAKERRNTRLL
RQTERELMPLGRGTVEKVKIMRNARLRKTLRCERSGATSIQRVFRGWRVR
KALLSWYRDYWIEAEDKATGDVYYVNTWNQEVRWVKPLEISLFERDDESI
RPGTGQSSRSKHGDDDEVERNTSSRFSQRLKQLTVEAEQAAREESRQLRL
AVAVGDRVDDSGWTLVTTGDDCRLPTAAATSCWYHALTSEYYWGDDPPPN
PVRLALTARTRSSATAIRILGLSPGVDGKHSFGEAFSGRQECLKVGISAS
VIRPSFALSDRAEGENWLQRQDISSLLRESETLRDIGPAGWCQLRVSIAP
ESPRDVAEGAILSASASKFTTDTEPGTAANSAITLTGKASTGKLNPENPA
QDAPGTPILESGGKSGTTPSAAQPFCLTFFYNRKTETVRWSLSPRSALET
PRTPRREAYRANHNASLDSNLRVSEVDGAEEAGSGTDWERVEDGDMVFYY
NRSMGISSWEPPAAWDVGGV*
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mRNA from alignment at H-paniculata_contig49:49757..55220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49.12057.1 ID=mRNA_H-paniculata_contig49.12057.1|Name=mRNA_H-paniculata_contig49.12057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5464bp|location=Sequence derived from alignment at H-paniculata_contig49:49757..55220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGACGAGCTTACCGAAGTAGGTGCCAAGGTCTCGGATCGGCTAAGGCA
TGTTCTGCTCGCCACTGGTCCCATAAAGACCGAGGCGGTGGCACTAAGAG
AGGAGCTCTTCCACATCAAGAACACAAAGGACAAGTATACCGACAGCGAT
AAGGTGCAGCATTTCGAGGCGCGGGGAGGACCGCCGGTCAGATGCAAATG
ATATCAGTTGAAAAACGTAGTGCTTAAACGGCGACAATTCCGTCAAAGGG
TTACTTTCGACTGCTTTGAGAATTGTACAGATGTGCTAATTTTGGAACAT
GGTGTCAATCGATACTGCTCCAGCATTCCAGTCTAATCTGCCCAAGTAAA
ATGGAACGGCAACCGGGTTTGAACTGAGCGCACGCGGAGCGAAGCACACA
CCGCGCTTCGCTCTTACTTTGTAAGAAAGTTGAAGACACTGCAGAAAGAT
GACACTGGGTGGAACGTGTAGGGAGGGGTGACAATGCCCACTTGTACGAG
AAATTTCAGCACTGATTGTTGTAGTCAGGTCTGGGGCACGGTAGGCATAC
TGCCAAAACTATTGGCACTTCCGTCGGTATCGCGAGAAGCGTTCTTTGCG
TGCTTCTCGAGGTGTGTCTGTTGCTTTGGTCATCTTGGACAAAACGTTTC
GTCTCTTCCACAATCTTCCACAGGAGGCAACCCTACCACGCCGTTGGGTC
AATAGGTTAATGTTGAACTTCGGCGGAGCGCAACGTTGCATGCTTGTCGG
TAGTGGTGCAAAACCCTGAAGCTGCGGTGAAAAATATTGAGGTCTACGCT
TGTTCGACGCATTTTTCGTCTTCATAACGGGAAAACCTAATCCCCAGTGA
CCAACATAACACATCAGTGTTACCCCGTCAAGCCGACTCCGATGTACAGT
GCACGTCTACTGACGAAACCCTGGTCCAATGGAGTTAAGCACAACAATGG
AAACATTACTCAGTATTAGCCACAGTGCTCGACTCTATTGGGTCTACCGA
AATTAATGCCATATTCTACACTTCCGAAACCATCGCGTGTGCGTGCAGAT
CAACGGCATCCGGCAGCGGTTCCTGACGAAGTTCTTGCAGGTGCGGCTGG
TGGAGGTACAGAAGTCGGCGCAGAACAGGCTCGAGGCATTGGAGGCGGAG
ACGATAGAGTTAGAGGTGACACCTGGTGTTTAGGAGGGGGGGGGGGTAGA
GAGATGTACCTTTTTTCACTTCATTCAATCGATGGTGAACAACAAAATAC
AAGCAAACAACACGTGCGGAGAAATATGCAGTACCAGCCGTGAAGTATCA
GCATGACTTGACAACAAGTTTTTATCTCGACAATGTGGGGACTATAGAAG
ATAGCAGAAGACATAACCGCGTTAGATGCGGAAGAAGCAGGGTGCAAATG
TCCACCCAGACTCTTGCCGTTCATCGCAGAGCAATAAACTCACAGTCAAT
ACTAAGTACTGTGCGCGCACAGACAGAATCCCACATGCCAACGCGCTTTA
TGTCCTTCTACTTTGAAATAGCTATGCGTATTCAACAGTCAGGGCGTTTC
GATTTACACCGTAAATCGAAGTTTACCCCAAGCTTTGCTGCTCGTTCGAT
CCGCCTCGAACTGTATCGGCTTGGATTTAACGGCATCGTTCCCGGGAACG
CGCAGGCAAAGGAGCGGCGCAATACGCGACTGCTGAGGCAAACGGAGAGG
GAGTTAATGCCGTTGGGTAGGGGTACCGTGGAAAAAGTCAAGATCATGCG
CAATGCCCGGCTGAGGAAAACGGTGGGGAGCTTACTGCTACTAGACTCGC
ACGCTATGTCAATCGCTGAAGCTAACCAACACACATTTACCAACTTGACC
CATAATGACGAGAATAGCTCCGAAATGGGAAATGGGCTTCGTTCGTAGGA
ATATACGTGATGCTTTCACCGAGGCACGAAATGAGGTTCCTCGGAAATAC
AATGTTGAGGCGCACCATATGAACGACTCGCGATCTCAAACGTGGCTGTA
TTACCTGTTCGTCTCCCTACGCTGCGTGGTCATAGGCTTCGTTCGTAGGA
ACATACGTCATGCTTTCGCCTCGCCGAGGCACGGCATGAAGTTCCTCTGA
AATACAATGTTGAGGCGCACCATGTGAACGACTCACGATCTCAATCGTGG
CTGTATTACCCTGTTCGTCTCCGCTACGCTGTGTGGTCAGTGTACCACCA
CGACCGATTAGAAATCTGGATGCGTAGGGAGGGTGCGGTTGCAACGTAGA
GCATGCGCGGCAATGAATGGGCACTACACCACTTGACTCCCCACAGTGCG
TTGTTTTTACTATATCCATCCGACTCCGCTAGCCCGAAAGGCAGCAGCCT
GCATTACCTTGTTGTTTCTAAAGAACCACCGAACACATATCCCTTTGAAA
TTGTGCGCCATAAAGTTACGATGTGAGAGGTCTGGAGCAACGTCAATCCA
GCGAGTCTTCAGAGGGTGGAGAGTAAGGAAGGCCTTATTGTCGTGGTATA
GGGATTACTGGATAGAGGCGGAGGTAAGGCGAAACATTAGTCCTCAGCTA
TGATTTCCGGTGTGTGGTGGTGAAAATAAAACGGCGAAGACAATCGATGT
ATGCATGCCCTGGGCTGGGTCATCGTACCTTTCTCCCAGTCAGATTCTTA
AGTACCAGCAGTCGTCTCATACATACGCGAATGAGGTTGAATGTTTCATT
GTTCCACACAAACGGCAGATCACGTTCTGCACTATAGTTGGACTTTGCAA
CCTACGTGCCACACGATGTGATAACATCCGGCCTAGACAGACCGTGCTTC
CCAAGTGTTGTTAAATCTCTTTTTAATTTCGACTGACATACCCAAACCTT
TTGGAATACTTCGTCAAAATGCCGAATGTTATTGGGCATGCTCAATGTTG
ATCTGATTTTTTTCTCTCATACGTGTGCGGTGATCCAAAGGTACACGTTC
GAGGTGTTGAAATACACACATCTCGATAATCATGCGATTTAGGCGGTAGT
AAAACGAAAAATCGGCAAACTATGATGATTCAAAGTTTCGTACCGTAACA
CTCTTGATGTCGCACCCCCCGATACTATTTCCAAACCCGATTTCTTCAAG
AAGCAAGAGCCTGCACTGCCCAAACAGCTAGTCTCTCGACATATCTCAAC
GAGATTTTCGCCACGATACCGCTATAGGTGTCATGAGCACCGTCGTTGTC
GAGAAAACCGAGTTTGAAAATCAATACCAGGGGGTGTGACATTAACAGGT
GGCACGGTATTCAAGATATTGGTTGGAGGCTCATGAATTGTGTGAGACCC
GCAAGAAAGATGAGCACGCAACGTTCAACTCAGACCGTGCAAAGGGTTTG
TGCAGGATTGCAAGCAACTACGAGTTCGGCGTAAGTTTCTGACTTCGCCT
ATAAACACGGTCAAATACAAACATCTCTAGGATAAAGCTACCGGTGATGT
GTACTACGTCAATACCTGGAACCAAGAAGTCCGTTGGGTGAAGCCGTTGG
AAATTTCGCTGTTCGAGCGGGACGACGAGAGTATTCGACCGGGTACGGGG
CAATCTAGCCGTTCTAAGCACGGCGACGATGACGAGGTGGAAAGAAACAC
CAGCAGGTATGTTCACCGCGGAAGCAGAGAGCTATGATGAGTGGGGTTGT
AGGGGTGAGAAGAAGGCAGCTCACCAACGTTGAAGTGTACTTCATGAATC
CAAATGTCGTGGTGCAATACTTGCTCCGTGGGACATTACATGTGAGGCGG
GAGGCATTGAATACACTATTTCCCACTAAGACGGTATATAACCTTGCTCT
CAGGGCGCGATGTACGATCCACTCGACAGTGCAGGAAGAACAATATTTTC
CCACAACATCTCCACCCAGAGACTTGGGTGCATTGCAGCCGCGTACGAAG
AAATGAGCAGTGCCGCAAGAGTGACCGGCGTTTAACAAGCAAGGTTCGGC
CAACTTTTCCTCGGATGCAGCAGCTTTTTGCCGTGTGCCTAATGAAGATA
CGAGAAATACTCTCAGTTGCAGCTACCCCCACCCAGTGTTTACGCCATGA
CCTGCCGCTATTCGAGCAGATTTAGTCAACGCCTCAAGCAGCTCACTGTT
GAAGCCGAGCAAGCTGCCCGTGAGGAATCGCGGCAACTCCGTCTCGCCGT
CGCTGTAGGCGACCGCGTCGACGACAGTGGGTGGACACTGGTAACCACCG
GTGACGATTGTCGGCTTCCGACAGCAGCAGCTACGTCGTGCTGGTATCAT
GCACTGACCTCGGAGTACTATTGGGGGGACGACCCCCCTCCAAATCCAGT
TCGGTTAGCCTTGACAGCCCGGACGAGGTCTTCGGCTACTGCCATTCGAA
TTCTGGGACTGTCGCCAGGTGTTGACGGCAAGCACTCCTTCGGTGAGGCC
TTCAGTGGGAGACAGGAGTGCTTGAAAGTTGGTATCTCTGCTTCTGTGAT
TCGTCGACAGATGTTTCGTGAGAACGGCCAGAAGGCTTTGCGTACGTACG
TACAGGACACCGCATATTTATTAGACTTAACGTGAGAAATAAGCTTTTGG
TGGCGGGGCAATTGTGGATTCTCGAGGACACACCGTCGTCTATTTAGCTG
GGTCGAGTGTCGTGCCTAATTGTCAAAAACACGCAACAGCGCCATAGTCT
GTAGTGAGTTTGGAACAAATGGCATCAAGGGCCCAGAAATCCGTTTTACA
GATGTAGCTATGGCCAAAGTTTTCCGTCACCTGCGAACTTGTTATAACAT
ACGAACTTTCTCGCAATGTCACGATAACCCGATGCTGCACTGGCTTTCAA
TATTGCAGGTCCGAGCTTCGCTTTGTCGGACCGCGCAGAGGGAGAGAACT
GGCTGCAACGACAAGACATCAGCTCGCTCCTGAGAGAGTCGGAGACATTG
CGTGATATCGGCCCAGCTGGTTGGTGCCAACTGCGAGTGTCCATCGCGCC
TGAGTCACCACGTGATGTTGCAGAAGGCGCCATCCTTTCCGCTTCGGCGA
GCAAATTCACGACGGATACTGAACCTGGTACAGCAGCCAACAGCGCTATT
ACCCTCACCGGCAAAGCCTCAACTGGAAAACTGAATCCTGAAAACCCTGC
ACAAGATGCACCGGGGACTCCTATATTGGAGTCAGGGGGAAAATCGGGGA
CTACCCCTTCTGCCGCCCAGCCGTTCTGCTTGACCTTTTTCTACAACCGT
AAAACCGAAACGGTACGCTGGTCACTGTCACCTCGCTCGGCGCTCGAAAC
GCCGCGCACACCACGTCGGGAGGCGTACCGGGCAAATCATAACGCCTCTT
TGGACTCCAACCTACGTGTCAGTGAAGTTGATGGCGCGGAGGAAGCAGGT
AGTGGGACTGACTGGGAGCGTGTTGAAGACGGGGACATGGTATTTTATTA
CAACAGGAGCATGGGAATTAGTAGCTGGGAACCGCCGGCTGCATGGGATG
TCGGAGGGGTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig49:49757..55220+

>mRNA_H-paniculata_contig49.12057.1 ID=mRNA_H-paniculata_contig49.12057.1|Name=mRNA_H-paniculata_contig49.12057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3426bp|location=Sequence derived from alignment at H-paniculata_contig49:49757..55220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGACGAGCTTACCGAAGTAGGTGCCAAGGTCTCGGATCGGCTAAGGCA
TGTTCTGCTCGCCACTGGTCCCATAAAGACCGAGGCGGTGGCACTAAGAG
AGGAGCTCTTCCACATCAAGAACACAAAGGACAAGTATACCGACAGCGAT
AAGCTCGACGAGCTTACCGAAGTAGGTGCCAAGGTCTCGGATCGGCTAAG
GCATGTTCTGCTCGCCACTGGTCCCATAAAGACCGAGGCGGTGGCACTAA
GAGAGGAGCTCTTCCACATCAAGAACACAAAGGACAAGTATACCGACAGC
GATAAGATCAACGGCATCCGGCAGCGGTTCCTGACGAAGTTCTTGCAGGT
GCGGCTGGTGGAGGTACAGAAGTCGGCGCAGAACAGGCTCGAGGCATTGG
AGGCGGAGACGATAGAGTTAGAGATCAACGGCATCCGGCAGCGGTTCCTG
ACGAAGTTCTTGCAGGTGCGGCTGGTGGAGGTACAGAAGTCGGCGCAGAA
CAGGCTCGAGGCATTGGAGGCGGAGACGATAGAGTTAGAGGCAAAGGAGC
GGCGCAATACGCGACTGCTGAGGCAAACGGAGAGGGAGTTAATGCCGTTG
GGTAGGGGTACCGTGGAAAAAGTCAAGATCATGCGCAATGCCCGGCTGAG
GAAAACGGCAAAGGAGCGGCGCAATACGCGACTGCTGAGGCAAACGGAGA
GGGAGTTAATGCCGTTGGGTAGGGGTACCGTGGAAAAAGTCAAGATCATG
CGCAATGCCCGGCTGAGGAAAACGTTACGATGTGAGAGGTCTGGAGCAAC
GTCAATCCAGCGAGTCTTCAGAGGGTGGAGAGTAAGGAAGGCCTTATTGT
CGTGGTATAGGGATTACTGGATAGAGGCGGAGTTACGATGTGAGAGGTCT
GGAGCAACGTCAATCCAGCGAGTCTTCAGAGGGTGGAGAGTAAGGAAGGC
CTTATTGTCGTGGTATAGGGATTACTGGATAGAGGCGGAGGATAAAGCTA
CCGGTGATGTGTACTACGTCAATACCTGGAACCAAGAAGTCCGTTGGGTG
AAGCCGTTGGAAATTTCGCTGTTCGAGCGGGACGACGAGAGTATTCGACC
GGGTACGGGGCAATCTAGCCGTTCTAAGCACGGCGACGATGACGAGGTGG
AAAGAAACACCAGCAGGATAAAGCTACCGGTGATGTGTACTACGTCAATA
CCTGGAACCAAGAAGTCCGTTGGGTGAAGCCGTTGGAAATTTCGCTGTTC
GAGCGGGACGACGAGAGTATTCGACCGGGTACGGGGCAATCTAGCCGTTC
TAAGCACGGCGACGATGACGAGGTGGAAAGAAACACCAGCAGCAGATTTA
GTCAACGCCTCAAGCAGCTCACTGTTGAAGCCGAGCAAGCTGCCCGTGAG
GAATCGCGGCAACTCCGTCTCGCCGTCGCTGTAGGCGACCGCGTCGACGA
CAGTGGGTGGACACTGGTAACCACCGGTGACGATTGTCGGCTTCCGACAG
CAGCAGCTACGTCGTGCTGGTATCATGCACTGACCTCGGAGTACTATTGG
GGGGACGACCCCCCTCCAAATCCAGTTCGGTTAGCCTTGACAGCCCGGAC
GAGGTCTTCGGCTACTGCCATTCGAATTCTGGGACTGTCGCCAGGTGTTG
ACGGCAAGCACTCCTTCGGTGAGGCCTTCAGTGGGAGACAGGAGTGCTTG
AAAGTTGGTATCTCTGCTTCTGTGATTCCAGATTTAGTCAACGCCTCAAG
CAGCTCACTGTTGAAGCCGAGCAAGCTGCCCGTGAGGAATCGCGGCAACT
CCGTCTCGCCGTCGCTGTAGGCGACCGCGTCGACGACAGTGGGTGGACAC
TGGTAACCACCGGTGACGATTGTCGGCTTCCGACAGCAGCAGCTACGTCG
TGCTGGTATCATGCACTGACCTCGGAGTACTATTGGGGGGACGACCCCCC
TCCAAATCCAGTTCGGTTAGCCTTGACAGCCCGGACGAGGTCTTCGGCTA
CTGCCATTCGAATTCTGGGACTGTCGCCAGGTGTTGACGGCAAGCACTCC
TTCGGTGAGGCCTTCAGTGGGAGACAGGAGTGCTTGAAAGTTGGTATCTC
TGCTTCTGTGATTCGTCCGAGCTTCGCTTTGTCGGACCGCGCAGAGGGAG
AGAACTGGCTGCAACGACAAGACATCAGCTCGCTCCTGAGAGAGTCGGAG
ACATTGCGTGATATCGGCCCAGCTGGTTGGTGCCAACTGCGAGTGTCCAT
CGCGCCTGAGTCACCACGTGATGTTGCAGAAGGCGCCATCCTTTCCGCTT
CGGCGAGCAAATTCACGACGGATACTGAACCTGGTACAGCAGCCAACAGC
GCTATTACCCTCACCGGCAAAGCCTCAACTGGAAAACTGAATCCTGAAAA
CCCTGCACAAGATGCACCGGGGACTCCTATATTGGAGTCAGGGGGAAAAT
CGGGGACTACCCCTTCTGCCGCCCAGCCGTTCTGCTTGACCTTTTTCTAC
AACCGTAAAACCGAAACGGTACGCTGGTCACTGTCACCTCGCTCGGCGCT
CGAAACGCCGCGCACACCACGTCGGGAGGCGTACCGGGCAAATCATAACG
CCTCTTTGGACTCCAACCTACGTGTCAGTGAAGTTGATGGCGCGGAGGAA
GCAGGTAGTGGGACTGACTGGGAGCGTGTTGAAGACGGGGACATGGTATT
TTATTACAACAGGAGCATGGGAATTAGTAGCTGGGAACCGCCGGCTGCAT
GGGATGTCGGAGGGGTGTAAGTCCGAGCTTCGCTTTGTCGGACCGCGCAG
AGGGAGAGAACTGGCTGCAACGACAAGACATCAGCTCGCTCCTGAGAGAG
TCGGAGACATTGCGTGATATCGGCCCAGCTGGTTGGTGCCAACTGCGAGT
GTCCATCGCGCCTGAGTCACCACGTGATGTTGCAGAAGGCGCCATCCTTT
CCGCTTCGGCGAGCAAATTCACGACGGATACTGAACCTGGTACAGCAGCC
AACAGCGCTATTACCCTCACCGGCAAAGCCTCAACTGGAAAACTGAATCC
TGAAAACCCTGCACAAGATGCACCGGGGACTCCTATATTGGAGTCAGGGG
GAAAATCGGGGACTACCCCTTCTGCCGCCCAGCCGTTCTGCTTGACCTTT
TTCTACAACCGTAAAACCGAAACGGTACGCTGGTCACTGTCACCTCGCTC
GGCGCTCGAAACGCCGCGCACACCACGTCGGGAGGCGTACCGGGCAAATC
ATAACGCCTCTTTGGACTCCAACCTACGTGTCAGTGAAGTTGATGGCGCG
GAGGAAGCAGGTAGTGGGACTGACTGGGAGCGTGTTGAAGACGGGGACAT
GGTATTTTATTACAACAGGAGCATGGGAATTAGTAGCTGGGAACCGCCGG
CTGCATGGGATGTCGGAGGGGTGTAA
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