mRNA_H-paniculata_contig11883.1205.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11883.1205.1
Unique NamemRNA_H-paniculata_contig11883.1205.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.740e-18
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:  177 KVLRELGNMDRTSIQYETPVETTLKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKGT 374
            +V +ELGNMD+T +Q+E PVETTL+ T  KDA IST GKEKERFT  LAVM DG+KV+P I FKGT
Sbjct:  112 EVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGT 177
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BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5JFD9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.590e-18
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  177 KVLRELGNMDRTSIQYETPVETTLKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKGT 374
            +V  ELGNMD+T +Q+E PVETTL+ T  KDA IST GKEKERFT  LAVM DG+KV+P I FKGT
Sbjct:  279 EVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGT 344
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BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.280e-18
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  177 KVLRELGNMDRTSIQYETPVETTLKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKGT 374
            +V  ELGNMD+T +Q+E PVETTL+ T  KDA IST GKEKERFT  LAVM DG+KV+P I FKGT
Sbjct:  112 EVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGT 177
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BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.620e-17
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  177 KVLRELGNMDRTSIQYETPVETTLKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKGT 374
            +V  ELGNMD+T +Q+E PVETTL+ T  KDA IST G+EKERFT  LAVM DG+KV+P I FKGT
Sbjct:  294 EVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGEEKERFTLVLAVMADGKKVSPRIIFKGT 359
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BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.090e-16
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:  177 KVLRELGNMDRTSIQYETPVETTLKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKGT 374
            +V  ELGNMD+T +Q+E PVETTL+ T  KDA IST GKEKERFT  LAVM DG+ V+P I FKGT
Sbjct:  266 EVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGT 331
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BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.750e-14
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:  201 MDRTSIQYETPVETTLKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKGT 374
            MD+T +Q+E PVETTL+ T  KDA IST GKE+ERF   LAVM DG+KV+P ITFKGT
Sbjct:    1 MDQTPVQHEMPVETTLEKTGAKDARISTGGKEQERFALVLAVMADGKKVSPRITFKGT 58
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BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.700e-14
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 3 
Query:  177 KVLRELGNMDRTSIQYETPVETTLKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKG 371
            KV  ELGNMD+T +Q E PVETTL+   VKDA IST GKEK+RFT  LAVM DG KV   I FKG
Sbjct:  181 KVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKG 245
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BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5L819_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L819_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.830e-13
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  177 KVLRELGNMDRTSIQYETPVETTLKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKGT 374
            +V  E+G M +T +Q+E PV  TL+ T  KDA IST GKEKERFT  LAVM DG+KV+P   FKGT
Sbjct:  263 EVFEEVGIMGQTPVQHEVPVAITLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRNIFKGT 328
[Close]
BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5JUV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.890e-7
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 3 
Query:  246 LKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKGT 374
            L+ T  KDA IST  KEKERFT  LAVM DG+KV+P I FKGT
Sbjct:    8 LEKTGAKDARISTGSKEKERFTLVLAVMADGKKVSPRIIFKGT 50
[Close]
BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.500e-6
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  177 KVLRELGNMDRTSIQYETPVETTLKTTWVKDALISTIGKEKERFTFFLAVMNDGRKVTPHITFKGT 374
            ++  ELGNMD+T +Q+ETPVE      W +          +ERFT  LAV  DG+KV   I FKGT
Sbjct:  236 ELFEELGNMDQTPVQHETPVERL----WKRPVRRMPASPPEERFTLCLAVSADGKKVPLRIIFKGT 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11883.1205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JUK2_9PHAE2.740e-1868.18DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFD9_9PHAE3.590e-1868.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6L9_9PHAE6.280e-1868.18DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE2.620e-1766.67DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE3.090e-1666.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT06_9PHAE2.750e-1467.24DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE4.700e-1466.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L819_9PHAE5.830e-1359.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUV9_9PHAE1.890e-767.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRZ1_9PHAE9.500e-645.45DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11883contigH-paniculata_contig11883:5020..6692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size406
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11883.1205.1prot_H-paniculata_contig11883.1205.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11883 5027..6620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.0833483-UTR-H-paniculata_contig11883:5019..50261622928900.0833483-UTR-H-paniculata_contig11883:5019..5026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11883 5020..5026 +
1691480661.4674463-UTR-H-paniculata_contig11883:5019..50261691480661.4674463-UTR-H-paniculata_contig11883:5019..5026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11883 5020..5026 +
1622928900.1247268-UTR-H-paniculata_contig11883:6620..66921622928900.1247268-UTR-H-paniculata_contig11883:6620..6692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11883 6621..6692 +
1691480661.5069616-UTR-H-paniculata_contig11883:6620..66921691480661.5069616-UTR-H-paniculata_contig11883:6620..6692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11883 6621..6692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.0980961-CDS-H-paniculata_contig11883:5026..53071622928900.0980961-CDS-H-paniculata_contig11883:5026..5307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11883 5027..5307 +
1691480661.4796603-CDS-H-paniculata_contig11883:5026..53071691480661.4796603-CDS-H-paniculata_contig11883:5026..5307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11883 5027..5307 +
1622928900.1114826-CDS-H-paniculata_contig11883:6574..66201622928900.1114826-CDS-H-paniculata_contig11883:6574..6620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11883 6575..6620 +
1691480661.4980114-CDS-H-paniculata_contig11883:6574..66201691480661.4980114-CDS-H-paniculata_contig11883:6574..6620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11883 6575..6620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11883.1205.1

>prot_H-paniculata_contig11883.1205.1 ID=prot_H-paniculata_contig11883.1205.1|Name=mRNA_H-paniculata_contig11883.1205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MCDNNPESASSTGMIAEIHVAKRSAAASSVQGQSASAAVNLEATELSPEH
ILWVQEESVARVGEHGSNLYPVRDAGRDHAENDLGEGRAYFYHRQGEGAL
YIFSRCDE*
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mRNA from alignment at H-paniculata_contig11883:5020..6692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11883.1205.1 ID=mRNA_H-paniculata_contig11883.1205.1|Name=mRNA_H-paniculata_contig11883.1205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1673bp|location=Sequence derived from alignment at H-paniculata_contig11883:5020..6692+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACCTCATGTGCGACAACAACCCAGAGAGCGCGAGCAGCACAGGGATGA
TCGCCGAGATTCATGTCGCCAAGCGTTCAGCAGCCGCGTCGAGTGTACAG
GGTCAGAGCGCGAGTGCGGCTGTGAATTTGGAAGCGACGGAGCTATCTCC
TGAGCATATTTTATGGGTACAGGAGGAAAGTGTTGCGCGAGTTGGGGAAC
ATGGATCGAACCTCTATCCAGTACGAGACGCCGGTAGAGACCACGCTGAA
AACGACTTGGGTGAAGGACGCGCTTATTTCTACCATAGGTAAGGCTGCCG
GGTATTCGTACTTGTACCTGTGGTAGAATTGTCAGTTTAGTTACAGAAAA
TCTTCATGTCTATAATTTACGCTTTGTGTTTATTTTCTTGCGTTTGATAT
ACGGTGTTGCGCTGTACTGTGCTAACCGTACTGACTGATTATGGCAGTAG
AGTCAGTGCTCTGTGCACTGTCTAATGTTGCATTTTGCTGTACTGACTGT
TAGGCCGCTTGTTACAGACGTGAAAAAGCTTCTCTGAAAATAATTCGGGC
ACTTTCCTCTGTGAAATTTCCTGAACGGGTTCGGTATGGGGCCATTTTCC
GGAGAAAAGCTCTCCGAGATCGAGGGCCGAACCCGTGTATGTGGCAAAAT
GCTGGGATGACTTAAGTTTAGGGGTGAAAGGCCAATCAAAATCGGTTATA
GCTGGATTCCTGCGAAATCTATTTAAGTAGAGCATTCTAATTTAAAATAA
TTCGGGGTAGAGCACTGTGCAAGCGATGGGGAAATTTTTCTTACTGAACT
TTGGCAAACTCCGAATACAAATTACGTATATTTAGGGTAGACAAAGTAAT
AAGAATGCTAAGATTCTTACTCAAGAGGGAAACAGCCCAGGTCCACTTCC
ATCGAGGTGTCTTGTCCCCTCATCTCCCGTGGTTTTTTGGATATAGGCAT
CGGTCGAAATCAAGCTACCAGGTCCGAGTGAACAAAATTAAACAGCTACC
CAAATTGGTCAAAACAAGAACTAGTCGAAGCCCTGGTTCAAAGCGTGAAG
CTGCGCGGAAATTGAAACGCGCCGTGGAGAGAGATGGCTTGGCGTTGTCC
GAAGCACTGGGGCACCGCTTGCCACCGGCACGGTTTTACTCGCTGCTGAC
GCGGTATTACCCACAGGGTCCAGGGGAGTGACCCGGACGGCATTAGGCAG
CATCTCGAATAGTGCACGGCGCTCAGCCGTGCCTCTTTTGTGTAGTTCGG
ACCAAGGTAGCAGAGCAGCAGCTGCGGTGTTGTGCGGACCAACTTGCCTC
ATTTCAATTCGATCGGTTATTACGGGTTGTGTCTGTATTTCTGATTAGCT
CATTTGAAAAATTCGTTTAGGCCTAAAAAGAGAAACAATAATCTCGGGGA
CAAGTTTTCAACGGTTGACCACCCCTATCGCTCCCCTAACTGTGTGCACT
GGCTGTACCTTTGTAGTATTTAAAATTCAAGACTACTGATCAGACTCAAT
CACAATAAAGTTAGTTGACCATTCTCCGTTCCTATCACTGTCTCATCCTC
CACAGGCAAGGAGAAGGAGCGCTTTACATTTTTTCTCGCTGTGATGAATG
ATGGACGAAAGGTGACTCCGCACATCACTTTCAAGGGTACGTTCCCCTCA
CGCAGTCTCACACGGAGAGCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig11883:5020..6692+

>mRNA_H-paniculata_contig11883.1205.1 ID=mRNA_H-paniculata_contig11883.1205.1|Name=mRNA_H-paniculata_contig11883.1205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig11883:5020..6692+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGACAACAACCCAGAGAGCGCGAGCAGCACAGGGATGATCGCCGA
GATTCATGTCGCCAAGCGTTCAGCAGCCGCGTCGAGTGTACAGGGTCAGA
GCGCGAGTGCGGCTGTGAATTTGGAAGCGACGGAGCTATCTCCTGAGCAT
ATTTTATGGGTACAGGAGGAAAGTGTTGCGCGAGTTGGGGAACATGGATC
GAACCTCTATCCAGTACGAGACGCCGGTAGAGACCACGCTGAAAACGACT
TGGGTGAAGGACGCGCTTATTTCTACCATAGATGTGCGACAACAACCCAG
AGAGCGCGAGCAGCACAGGGATGATCGCCGAGATTCATGTCGCCAAGCGT
TCAGCAGCCGCGTCGAGTGTACAGGGTCAGAGCGCGAGTGCGGCTGTGAA
TTTGGAAGCGACGGAGCTATCTCCTGAGCATATTTTATGGGTACAGGAGG
AAAGTGTTGCGCGAGTTGGGGAACATGGATCGAACCTCTATCCAGTACGA
GACGCCGGTAGAGACCACGCTGAAAACGACTTGGGTGAAGGACGCGCTTA
TTTCTACCATAGGCAAGGAGAAGGAGCGCTTTACATTTTTTCTCGCTGTG
ATGAATGAGCAAGGAGAAGGAGCGCTTTACATTTTTTCTCGCTGTGATGA
ATGA
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