mRNA_H-paniculata_contig48929.12043.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48929.12043.1
Unique NamemRNA_H-paniculata_contig48929.12043.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48929.12043.1 vs. uniprot
Match: UPI000C1D0071 (uncharacterized protein LOC111370921 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D0071)

HSP 1 Score: 53.5 bits (127), Expect = 7.460e-5
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:  646 PKPKAMTAVTDDRKII---DNPAVLGEKERWNSDTSATHHMALDETGFEDYTPALPGTMCEIANGTFVPVAGWGRLVLLVSHLGGKSRVSKLNRVAYVPELGRNLIS 957
            P P      TD  K +   + P + G+ + W  D+  T HM L +  F +    L G   ++ N     + G G+L LL+S+    + + +L++V YVPEL RNLIS
Sbjct:   62 PNPCLPLQNTDGSKSVVCKNGPDIQGDPKEWVLDSGCTFHMCLIKNWFIELVD-LSGGQVQMGNDMSCQIRGTGKLNLLLSN----NYILELDKVRYVPELKRNLIS 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48929.12043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000C1D00717.460e-532.71uncharacterized protein LOC111370921 n=1 Tax=Olea ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48929contigH-paniculata_contig48929:153..1217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1011
Cds size1011
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930445.466454-CDS-H-paniculata_contig48929:152..5111622930445.466454-CDS-H-paniculata_contig48929:152..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48929 153..511 -
1691481295.6295927-CDS-H-paniculata_contig48929:152..5111691481295.6295927-CDS-H-paniculata_contig48929:152..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48929 153..511 -
1622930445.486115-CDS-H-paniculata_contig48929:565..12171622930445.486115-CDS-H-paniculata_contig48929:565..1217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48929 566..1217 -
1691481295.6380606-CDS-H-paniculata_contig48929:565..12171691481295.6380606-CDS-H-paniculata_contig48929:565..1217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48929 566..1217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48929.12043.1prot_H-paniculata_contig48929.12043.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48929 153..1217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48929.12043.1

>prot_H-paniculata_contig48929.12043.1 ID=prot_H-paniculata_contig48929.12043.1|Name=mRNA_H-paniculata_contig48929.12043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=337bp
MALKIVQSTELSSEAWRKLQKHYRARGLKEKSRLLHEFNSSRMEPGEEST
KFLLRVDRVANDLERLGRTVDEDDRNLATVKGLTPEYDIERRMIESSDNA
PNRALIGTIITNQYNRLERQKVEAGAKTLAVTMKGAAETCQLCHKLVHTA
PQCRGGQRAPSNIKEKFDGNCSHCGKHGHRGEDCWGAKGGDQKKKRKDRG
LCWVCRSPEHIARRCPKPKAMTAVTDDRKIIDNPAVLGEKERWNSDTSAT
HHMALDETGFEDYTPALPGTMCEIANGTFVPVAGWGRLVLLVSHLGGKSR
VSKLNRVAYVPELGRNLISTRRATDTPGKTFVYSANK
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mRNA from alignment at H-paniculata_contig48929:153..1217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48929.12043.1 ID=mRNA_H-paniculata_contig48929.12043.1|Name=mRNA_H-paniculata_contig48929.12043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-paniculata_contig48929:153..1217- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTGAAGATCGTCCAGAGCACCGAGTTGTCGAGTGAGGCGTGGAG
GAAGCTCCAAAAGCACTACCGCGCTAGAGGCCTCAAAGAGAAGTCACGTC
TGCTGCACGAATTTAACTCCTCCAGGATGGAGCCCGGGGAAGAATCCACA
AAATTCCTTTTGCGGGTAGACCGGGTCGCCAATGACCTGGAGCGGCTTGG
GAGGACCGTCGACGAAGATGACAGGAATCTGGCGACGGTGAAGGGGCTGA
CACCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGATAACGCG
CCAAATAGAGCGCTCATCGGAACGATCATCACAAACCAGTATAACAGACT
TGAGCGGCAGAAAGTCGAGGCTGGGGCAAAGACACTGGCGGTCACGATGA
AAGGTGCAGCGGAAACTTGCCAGCTGTGCCACAAGCTTGTGCACACAGCT
CCTCAATGCAGGGGGGGTCAAAGGGCACCCTCGAACATCAAGGAAAAGTT
CGACGGCAATTGCAGCCACTGCGGGAAACATGGACATCGCGGTGAGGACT
GCTGGGGCGCCAAAGGGGGCGACCAAAAGAAAAAGAGAAAGGATCGAGGC
CTATGCTGGGTATGCCGTAGCCCAGAGCATATCGCGAGACGGTGCCCGAA
GCGTCACCGCGATACCGACGAAGGAGAAGTAGCGCTCATGGCTGCCATAT
GACGAGCCAAGGCAATGACGGCCGTAACTGACGACCGCAAAATAATAGAT
AACCCTGCCGTACTCGGAGAGAAGGAACGCTGGAATTCAGACACCAGCGC
GACACACCACATGGCGTTGGATGAGACTGGGTTCGAGGACTACACTCCAG
CACTCCCGGGGACCATGTGTGAAATCGCCAACGGAACATTCGTACCAGTC
GCGGGGTGGGGACGCCTTGTGCTTCTAGTAAGTCACCTGGGTGGAAAATC
ACGAGTATCAAAGTTAAACAGGGTTGCCTATGTACCCGAGCTCGGGCGCA
ATTTAATCTCCACACGCCGAGCAACAGATACACCGGGTAAAACGTTCGTA
TACAGTGCCAATAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig48929:153..1217-

>mRNA_H-paniculata_contig48929.12043.1 ID=mRNA_H-paniculata_contig48929.12043.1|Name=mRNA_H-paniculata_contig48929.12043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig48929:153..1217- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTGAAGATCGTCCAGAGCACCGAGTTGTCGAGTGAGGCGTGGAG
GAAGCTCCAAAAGCACTACCGCGCTAGAGGCCTCAAAGAGAAGTCACGTC
TGCTGCACGAATTTAACTCCTCCAGGATGGAGCCCGGGGAAGAATCCACA
AAATTCCTTTTGCGGGTAGACCGGGTCGCCAATGACCTGGAGCGGCTTGG
GAGGACCGTCGACGAAGATGACAGGAATCTGGCGACGGTGAAGGGGCTGA
CACCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGATAACGCG
CCAAATAGAGCGCTCATCGGAACGATCATCACAAACCAGTATAACAGACT
TGAGCGGCAGAAAGTCGAGGCTGGGGCAAAGACACTGGCGGTCACGATGA
AAGGTGCAGCGGAAACTTGCCAGCTGTGCCACAAGCTTGTGCACACAGCT
CCTCAATGCAGGGGGGGTCAAAGGGCACCCTCGAACATCAAGGAAAAGTT
CGACGGCAATTGCAGCCACTGCGGGAAACATGGACATCGCGGTGAGGACT
GCTGGGGCGCCAAAGGGGGCGACCAAAAGAAAAAGAGAAAGGATCGAGGC
CTATGCTGGGTATGCCGTAGCCCAGAGCATATCGCGAGACGGTGCCCGAA
GCATGGCGCTGAAGATCGTCCAGAGCACCGAGTTGTCGAGTGAGGCGTGG
AGGAAGCTCCAAAAGCACTACCGCGCTAGAGGCCTCAAAGAGAAGTCACG
TCTGCTGCACGAATTTAACTCCTCCAGGATGGAGCCCGGGGAAGAATCCA
CAAAATTCCTTTTGCGGGTAGACCGGGTCGCCAATGACCTGGAGCGGCTT
GGGAGGACCGTCGACGAAGATGACAGGAATCTGGCGACGGTGAAGGGGCT
GACACCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGATAACG
CGCCAAATAGAGCGCTCATCGGAACGATCATCACAAACCAGTATAACAGA
CTTGAGCGGCAGAAAGTCGAGGCTGGGGCAAAGACACTGGCGGTCACGAT
GAAAGGTGCAGCGGAAACTTGCCAGCTGTGCCACAAGCTTGTGCACACAG
CTCCTCAATGCAGGGGGGGTCAAAGGGCACCCTCGAACATCAAGGAAAAG
TTCGACGGCAATTGCAGCCACTGCGGGAAACATGGACATCGCGGTGAGGA
CTGCTGGGGCGCCAAAGGGGGCGACCAAAAGAAAAAGAGAAAGGATCGAG
GCCTATGCTGGGTATGCCGTAGCCCAGAGCATATCGCGAGACGGTGCCCG
AAGCCCAAGGCAATGACGGCCGTAACTGACGACCGCAAAATAATAGATAA
CCCTGCCGTACTCGGAGAGAAGGAACGCTGGAATTCAGACACCAGCGCGA
CACACCACATGGCGTTGGATGAGACTGGGTTCGAGGACTACACTCCAGCA
CTCCCGGGGACCATGTGTGAAATCGCCAACGGAACATTCGTACCAGTCGC
GGGGTGGGGACGCCTTGTGCTTCTAGTAAGTCACCTGGGTGGAAAATCAC
GAGTATCAAAGTTAAACAGGGTTGCCTATGTACCCGAGCTCGGGCGCAAT
TTAATCTCCACACGCCGAGCAACAGATACACCGGGTAAAACGTTCGTATA
CAGTGCCAATAAACCAAGGCAATGACGGCCGTAACTGACGACCGCAAAAT
AATAGATAACCCTGCCGTACTCGGAGAGAAGGAACGCTGGAATTCAGACA
CCAGCGCGACACACCACATGGCGTTGGATGAGACTGGGTTCGAGGACTAC
ACTCCAGCACTCCCGGGGACCATGTGTGAAATCGCCAACGGAACATTCGT
ACCAGTCGCGGGGTGGGGACGCCTTGTGCTTCTAGTAAGTCACCTGGGTG
GAAAATCACGAGTATCAAAGTTAAACAGGGTTGCCTATGTACCCGAGCTC
GGGCGCAATTTAATCTCCACACGCCGAGCAACAGATACACCGGGTAAAAC
GTTCGTATACAGTGCCAATAAA
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