mRNA_H-paniculata_contig48926.12041.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48926.12041.1
Unique NamemRNA_H-paniculata_contig48926.12041.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig48926.12041.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.750e-19
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   13 LEDMGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLDDIRHMVHTMYVDSLSRPANTTPVTGRGIAMQAAGKDSSDVHCNYCRGIGHVIQDC 300
            LEDMG+ + DE YED++L+AL  EY  +R  S++ R FGL +IR  +  MY+D LSR ++   V GRG+AM A   +SS+V C  C+  GH   +C
Sbjct:  111 LEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSA---ESSNVQCRNCQEFGHYANEC 203
[Close]
BLAST of mRNA_H-paniculata_contig48926.12041.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.370e-12
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:   16 EDMGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLDDIRHMVHTMYVDSLSRPANTTPVTGRGIAMQAAGKDSSDVHCNYC 270
            +DM + + DER+ED+ILQA+  +Y+ VR  S+  R FGL++I+  + +MY+DSLSR   T  V GRG+AM A+  DS  + C  C
Sbjct:   22 KDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTW-TKSVAGRGVAMPASNGDSI-IKCFNC 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48926.12041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE7.750e-1945.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE1.370e-1245.88Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48926contigH-paniculata_contig48926:1006..1356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930445.349744-UTR-H-paniculata_contig48926:1005..10261622930445.349744-UTR-H-paniculata_contig48926:1005..1026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48926 1006..1026 +
1691481295.6024187-UTR-H-paniculata_contig48926:1005..10261691481295.6024187-UTR-H-paniculata_contig48926:1005..1026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48926 1006..1026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930445.3722458-CDS-H-paniculata_contig48926:1026..13561622930445.3722458-CDS-H-paniculata_contig48926:1026..1356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48926 1027..1356 +
1691481295.6119423-CDS-H-paniculata_contig48926:1026..13561691481295.6119423-CDS-H-paniculata_contig48926:1026..1356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48926 1027..1356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48926.12041.1prot_H-paniculata_contig48926.12041.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48926 1027..1356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48926.12041.1

>prot_H-paniculata_contig48926.12041.1 ID=prot_H-paniculata_contig48926.12041.1|Name=mRNA_H-paniculata_contig48926.12041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLDDIRHMVHTMYVD
SLSRPANTTPVTGRGIAMQAAGKDSSDVHCNYCRGIGHVIQDCAILKEKA
RRGGPNQSPR
back to top

mRNA from alignment at H-paniculata_contig48926:1006..1356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48926.12041.1 ID=mRNA_H-paniculata_contig48926.12041.1|Name=mRNA_H-paniculata_contig48926.12041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig48926:1006..1356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCGCGACCTTCTCGAAGACATGGGACAGCCGGTGCACGACGAGAGGTA
TGAGGACATTATCTTGCAGGCTCTCCCCGCCGAGTACGAGAGGGTTCGCA
TTGCCAGCTATGAAAAGCGGGATTTTGGCCTGGACGACATCCGGCACATG
GTCCACACTATGTATGTCGACAGCCTTTCACGTCCTGCGAACACCACGCC
GGTCACAGGCCGTGGGATCGCCATGCAGGCGGCCGGGAAAGACAGCAGCG
ACGTTCACTGCAACTACTGTAGGGGCATCGGACACGTAATACAGGACTGC
GCCATCCTGAAGGAGAAGGCGCGCCGGGGTGGACCTAATCAGTCGCCTCG
T
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig48926:1006..1356+

>mRNA_H-paniculata_contig48926.12041.1 ID=mRNA_H-paniculata_contig48926.12041.1|Name=mRNA_H-paniculata_contig48926.12041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig48926:1006..1356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGACAGCCGGTGCACGACGAGAGGTATGAGGACATTATCTTGCAGGC
TCTCCCCGCCGAGTACGAGAGGGTTCGCATTGCCAGCTATGAAAAGCGGG
ATTTTGGCCTGGACGACATCCGGCACATGGTCCACACTATGTATGTCGAC
AGCCTTTCACGTCCTGCGAACACCACGCCGGTCACAGGCCGTGGGATCGC
CATGCAGGCGGCCGGGAAAGACAGCAGCGACGTTCACTGCAACTACTGTA
GGGGCATCGGACACGTAATACAGGACTGCGCCATCCTGAAGGAGAAGGCG
CGCCGGGGTGGACCTAATCAGTCGCCTCGTATGGGACAGCCGGTGCACGA
CGAGAGGTATGAGGACATTATCTTGCAGGCTCTCCCCGCCGAGTACGAGA
GGGTTCGCATTGCCAGCTATGAAAAGCGGGATTTTGGCCTGGACGACATC
CGGCACATGGTCCACACTATGTATGTCGACAGCCTTTCACGTCCTGCGAA
CACCACGCCGGTCACAGGCCGTGGGATCGCCATGCAGGCGGCCGGGAAAG
ACAGCAGCGACGTTCACTGCAACTACTGTAGGGGCATCGGACACGTAATA
CAGGACTGCGCCATCCTGAAGGAGAAGGCGCGCCGGGGTGGACCTAATCA
GTCGCCTCGT
back to top