mRNA_H-paniculata_contig4892.12038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4892.12038.1
Unique NamemRNA_H-paniculata_contig4892.12038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: D8LN02_ECTSI (Dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN02_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 2.710e-97
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 1 
Query:    1 ENALVLANDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            ENALVLAN P RVPFI+DPANACT WL+SFLAKDASRPLEVVSAAD RF+SRVELSVRFGKTLLVLECDG+EPMLYPL R+DLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTI+HEQPELEKAKSEMLR+EEGFK
Sbjct: 2796 ENALVLANSPGRVPFIIDPANACTAWLQSFLAKDASRPLEVVSAADARFTSRVELSVRFGKTLLVLECDGVEPMLYPLIRQDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIQHEQPELEKAKSEMLRQEEGFK 2964
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BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: A0A812RCH9_SYMMI (DYNC2H1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCH9_SYMMI)

HSP 1 Score: 258 bits (659), Expect = 1.090e-76
Identity = 124/169 (73.37%), Postives = 147/169 (86.98%), Query Frame = 1 
Query:    1 ENALVLANDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            EN LV+ N  +RVPFI+DPA+ACT WLKS L+KD  RPLE+V+  D RF+++VEL+VRFGKTLLVLE DG+E MLYPL R+DL+HQGPRYVV VGDKL+D+NE FRLF+VTRNP P+LPPDA+ALV +VNFTVTRSGLEGQLLG  I++EQPELEKAK EMLR+EE FK
Sbjct:  688 ENGLVIVNSADRVPFIIDPASACTDWLKSVLSKDKHRPLEIVTNHDQRFTNQVELAVRFGKTLLVLEADGVEAMLYPLCRRDLIHQGPRYVVSVGDKLIDFNEGFRLFLVTRNPDPDLPPDAAALVVQVNFTVTRSGLEGQLLGTAIQNEQPELEKAKGEMLRREEDFK 856
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BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: A0A7S3HEK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEK4_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.240e-76
Identity = 122/169 (72.19%), Postives = 144/169 (85.21%), Query Frame = 1 
Query:    1 ENALVLANDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            EN+LV++N  +RVPFI+DPA+A T WLKS L+ D +RPLEVV+  D RF + VEL+VRFGKTLL+LE DGLEP LYPL RKDL HQGPRYVV +GDK +DYNE FR+++VTR+P PE+PPDASAL+  VNFTVTRSGLEGQLLG+ I+HEQPELEKAK EMLRKEE FK
Sbjct:  536 ENSLVISNSTDRVPFIIDPASAATAWLKSILSNDRTRPLEVVTPFDVRFMNTVELAVRFGKTLLILEADGLEPTLYPLCRKDLCHQGPRYVVNIGDKTIDYNEGFRMYLVTRHPAPEIPPDASALLTIVNFTVTRSGLEGQLLGLAIQHEQPELEKAKGEMLRKEEDFK 704
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BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: A0A836CKQ4_9STRA (Dynein heavy chain, N-terminal region 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ4_9STRA)

HSP 1 Score: 253 bits (646), Expect = 7.830e-75
Identity = 127/176 (72.16%), Postives = 147/176 (83.52%), Query Frame = 1 
Query:    1 ENALVLA-------NDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            ENAL LA           RVPF++DPA+A T WL++FL+KDA RPLEVVS+ DPRFSS VEL+VRFGKTLL+LE DGLEPMLYPLAR+DL HQGPR+VVQVGD+ +DYNE FR+ +VTR P P+LPP A+AL+ EVNFTVTRSGLEGQLLG TI+HEQPELEKAKS+ML KEE FK
Sbjct: 2171 ENALALAACLQGDMGAVARVPFVIDPASAATAWLRAFLSKDAQRPLEVVSSGDPRFSSSVELAVRFGKTLLILEADGLEPMLYPLARRDLQHQGPRWVVQVGDRSVDYNEGFRMVLVTRRPAPDLPPCAAALLAEVNFTVTRSGLEGQLLGATIQHEQPELEKAKSDMLAKEEAFK 2346
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BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: A0A482SUX4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUX4_9ARCH)

HSP 1 Score: 247 bits (630), Expect = 1.110e-72
Identity = 117/169 (69.23%), Postives = 144/169 (85.21%), Query Frame = 1 
Query:    1 ENALVLANDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            EN LV++N  +RVPFI+DPA+A T WLK+ LA D +RP+EVV+  D RF ++VEL+VRFGKTL++LE DGLEP LYPL RKDL HQGPRYVV VGDK +DYNENFR+F+VTR+P P++PPDAS L+  VNFTVT+SGLEGQLLG+ I+HEQPELE+AK EML++EE FK
Sbjct: 1593 ENGLVISNATDRVPFIIDPASAATNWLKAILAHDKTRPVEVVTQFDSRFMNQVELAVRFGKTLVILEADGLEPALYPLCRKDLFHQGPRYVVNVGDKTIDYNENFRMFLVTRDPNPDIPPDASGLLTIVNFTVTKSGLEGQLLGLAIQHEQPELEQAKGEMLKREEDFK 1761
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BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: A0A7S1XSR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSR9_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.090e-70
Identity = 114/169 (67.46%), Postives = 138/169 (81.66%), Query Frame = 1 
Query:    1 ENALVLANDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            ENALV+ N    VPFI+DPA+ C  WLK+ L +D  RPLEVV +  PRF ++VELSVRFGKTL+++E D LEPMLYPLAR+DL + GPR  V+VGDK++DYNENFR+ +VTR+P P LPPDA+AL+  VNFTVTRSGLE QLLG TI+HEQPELEKAKS ML++EE FK
Sbjct:   61 ENALVIDNGRRLVPFIIDPASVCLGWLKATLEEDKRRPLEVVPSQSPRFVNQVELSVRFGKTLMLVEVDRLEPMLYPLARRDLSNAGPRLAVRVGDKVVDYNENFRMLLVTRSPDPFLPPDAAALLTVVNFTVTRSGLENQLLGSTIQHEQPELEKAKSAMLKREEDFK 229
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BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: A0A485LI71_9STRA (Aste57867_21689 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI71_9STRA)

HSP 1 Score: 237 bits (604), Expect = 3.570e-69
Identity = 118/169 (69.82%), Postives = 138/169 (81.66%), Query Frame = 1 
Query:    1 ENALVLANDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            EN LV+     R PFIVDPANA TTWL++ LAKDASRPL VV + +PRF S VE +VRFGKTL VLE D +EP LYPL R+DL HQGPR+VV++GDK +DYN+NFR+ +VTRNP P+LPPDA A+V  VNFTVT+SGLEGQLLGVTI+HEQPELE  KSE+LR EE FK
Sbjct: 3220 ENGLVVHYTKERTPFIVDPANAATTWLQAHLAKDASRPLSVVQSQEPRFVSLVEQAVRFGKTLAVLEVDDVEPYLYPLIRRDLTHQGPRFVVRLGDKDIDYNDNFRMVLVTRNPDPDLPPDARAIVQVVNFTVTKSGLEGQLLGVTIQHEQPELEAQKSELLRSEEEFK 3388
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BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: A0A8K1CGG3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGG3_PYTOL)

HSP 1 Score: 234 bits (597), Expect = 3.120e-68
Identity = 117/170 (68.82%), Postives = 140/170 (82.35%), Query Frame = 1 
Query:    1 ENALVLAND-PNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            ENALV+ N    R PFI+DPA+A TTWL++ LAKD +RPL +V A DPRF + VE +VRFGKTL+VLE D +EP LYPL RKDL+HQGPR+VV +GDK +DYNENFRLF+VTRNP P L PDA A+V  VNFTVT+SGLEGQLLGVTI+HEQPELE+ KSE+L++EE  K
Sbjct: 3323 ENALVVVNSCGERCPFIIDPASASTTWLQAELAKDTTRPLSIVQAQDPRFVNLVEQAVRFGKTLVVLEVDTVEPYLYPLVRKDLIHQGPRFVVSLGDKFIDYNENFRLFLVTRNPSPPLAPDALAIVNVVNFTVTKSGLEGQLLGVTIQHEQPELEQEKSELLKQEEDCK 3492
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BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: A0A0P1AJ37_PLAHL (Dynein heavy chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJ37_PLAHL)

HSP 1 Score: 233 bits (595), Expect = 5.800e-68
Identity = 113/170 (66.47%), Postives = 143/170 (84.12%), Query Frame = 1 
Query:    1 ENALVLA-NDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            ENAL+++ +   R PFI+DPANACTTWL++ LAKD++RPL +V + D RF + VE +VRFG+TL+VL+ D +EP LYPL RKDL+HQGPR+VV +GDK++DYNENFR+++VTRNP P L PDA A+V  VNFTVTRSGLEGQLLGVTI+HEQPELE+ KSE+LR+EE  K
Sbjct: 3325 ENALIISYSSGERCPFIIDPANACTTWLQAELAKDSTRPLSIVQSQDARFVNIVEQAVRFGRTLVVLDADNVEPYLYPLVRKDLIHQGPRFVVALGDKVIDYNENFRMYLVTRNPSPPLAPDAMAIVNVVNFTVTRSGLEGQLLGVTIQHEQPELEQEKSELLRQEEECK 3494
[Close]
BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Match: A0A7S1CBP3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBP3_9STRA)

HSP 1 Score: 231 bits (590), Expect = 2.640e-67
Identity = 110/169 (65.09%), Postives = 138/169 (81.66%), Query Frame = 1 
Query:    1 ENALVLANDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFSSRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMDYNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHEQPELEKAKSEMLRKEEGFK 507
            ENA+V+     RVPFI+DPA   T WL+  LA+D SRPLE  +  D RF ++VEL+VRFGK+LL+ E D +EPML+PL R+DLVHQGPR VVQ+G+K +DYNE FR+FMVTRNP+P++P DA++L+ EVNFTVTRSGLEGQLLGVT++HEQPELE  KSE+L+KEE  K
Sbjct:  698 ENAIVILESEQRVPFIIDPATTATAWLERQLARDESRPLEAGAVQDQRFQTQVELAVRFGKSLLIKEVDRVEPMLFPLVRRDLVHQGPRLVVQIGEKQVDYNEKFRMFMVTRNPRPDIPADAASLITEVNFTVTRSGLEGQLLGVTLQHEQPELETRKSELLQKEEELK 866
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4892.12038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN02_ECTSI2.710e-9792.90Dynein heavy chain dynein heavy chain n=1 Tax=Ecto... [more]
A0A812RCH9_SYMMI1.090e-7673.37DYNC2H1 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A7S3HEK4_9STRA1.240e-7672.19Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A836CKQ4_9STRA7.830e-7572.16Dynein heavy chain, N-terminal region 2-domain-con... [more]
A0A482SUX4_9ARCH1.110e-7269.23Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S1XSR9_9STRA1.090e-7067.46Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A485LI71_9STRA3.570e-6969.82Aste57867_21689 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1CGG3_PYTOL3.120e-6868.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AJ37_PLAHL5.800e-6866.47Dynein heavy chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A7S1CBP3_9STRA2.640e-6765.09Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4892contigH-paniculata_contig4892:2227..4517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.1
Seed ortholog evalue6.3e-85
Seed eggNOG ortholog2880.D8LN02
Preferred nameDYNC2H1
KEGG koko:K05636,ko:K10414
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04962,ko05132,ko05145,ko05146,ko05165,ko05200,ko05222,map04145,map04151,map04510,map04512,map04962,map05132,map05145,map05146,map05165,map05200,map05222
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001568,GO:0001578,GO:0001944,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005858,GO:0005868,GO:0005874,GO:0005875,GO:0005929,GO:0005930,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007030,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0007626,GO:0007628,GO:0007635,GO:0007638,GO:0008049,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008569,GO:0008589,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010256,GO:0010467,GO:0010646,GO:0010647,GO:0010648,GO:0010970,GO:0010996,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016485,GO:0016545,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017015,GO:0017111,GO:0019098,GO:0019538,GO:0019953,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022414,GO:0022607,GO:0022611,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030286,GO:0030326,GO:0030512,GO:0030534,GO:0030705,GO:0030900,GO:0030990,GO:0031223,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035721,GO:0035735,GO:0036156,GO:0036159,GO:0040024,GO:0042073,GO:0042221,GO:0042623,GO:0042995,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045177,GO:0045184,GO:0045433,GO:0045503,GO:0045505,GO:0045880,GO:0046907,GO:0048065,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048609,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051959,GO:0055115,GO:0060173,GO:0060179,GO:0060271,GO:0060322,GO:0060976,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090659,GO:0097014,GO:0097542,GO:0097730,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902494,GO:1903844,GO:1903845,GO:1905515,GO:1990939,GO:2000026
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04516,ko04812
Exons5
Model size510
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4892.12038.1prot_H-paniculata_contig4892.12038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4892 2227..4515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930445.0731425-CDS-H-paniculata_contig4892:2226..23251622930445.0731425-CDS-H-paniculata_contig4892:2226..2325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 2227..2325 +
1691481295.4844613-CDS-H-paniculata_contig4892:2226..23251691481295.4844613-CDS-H-paniculata_contig4892:2226..2325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 2227..2325 +
1622930445.0906694-CDS-H-paniculata_contig4892:2875..29491622930445.0906694-CDS-H-paniculata_contig4892:2875..2949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 2876..2949 +
1691481295.495503-CDS-H-paniculata_contig4892:2875..29491691481295.495503-CDS-H-paniculata_contig4892:2875..2949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 2876..2949 +
1622930445.1113827-CDS-H-paniculata_contig4892:3288..34061622930445.1113827-CDS-H-paniculata_contig4892:3288..3406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 3289..3406 +
1691481295.5041234-CDS-H-paniculata_contig4892:3288..34061691481295.5041234-CDS-H-paniculata_contig4892:3288..3406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 3289..3406 +
1622930445.1241856-CDS-H-paniculata_contig4892:3919..40321622930445.1241856-CDS-H-paniculata_contig4892:3919..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 3920..4032 +
1691481295.5132093-CDS-H-paniculata_contig4892:3919..40321691481295.5132093-CDS-H-paniculata_contig4892:3919..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 3920..4032 +
1622930445.1377769-CDS-H-paniculata_contig4892:4412..45151622930445.1377769-CDS-H-paniculata_contig4892:4412..4515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 4413..4515 +
1691481295.522105-CDS-H-paniculata_contig4892:4412..45151691481295.522105-CDS-H-paniculata_contig4892:4412..4515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 4413..4515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4892.12038.1

>prot_H-paniculata_contig4892.12038.1 ID=prot_H-paniculata_contig4892.12038.1|Name=mRNA_H-paniculata_contig4892.12038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
ENALVLANDPNRVPFIVDPANACTTWLKSFLAKDASRPLEVVSAADPRFS
SRVELSVRFGKTLLVLECDGLEPMLYPLARKDLVHQGPRYVVQVGDKLMD
YNENFRLFMVTRNPKPELPPDASALVCEVNFTVTRSGLEGQLLGVTIEHE
QPELEKAKSEMLRKEEGFK
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mRNA from alignment at H-paniculata_contig4892:2227..4517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4892.12038.1 ID=mRNA_H-paniculata_contig4892.12038.1|Name=mRNA_H-paniculata_contig4892.12038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2291bp|location=Sequence derived from alignment at H-paniculata_contig4892:2227..4517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAATGCTCTGGTATTAGCCAATGACCCAAATCGGGTTCCTTTCATCGT
CGACCCAGCGAACGCTTGCACTACTTGGCTTAAGTCCTTCCTTGCGAAGG
TGCGAGACGCCCAATTCCCCACCACCCTCACTGATGTTTTCAGGAGCGGT
CCTACATAGAAAAAAAATTGATGCAATGGCTGTTTCTTGAAGCATGAGCC
GAAGCATGCTTTCCTCTGGTCACCGGTGTCAAGCTGTCCCCTTTTGTTGC
GCTTTAGTCAAGCCTTACACGTGCGAGAGAGGATTCCATTTTTGAGATAA
AATTTAACGATTTCCCGCCATCAGCATGAATCTAACGTGTCCATGTTTCG
GGTTTCTTGTCCTTGGATTCCGAGAGTGCTTGCGGCGTTATTTGCACGCC
CTTCCTAATTCAGTATCTAATCCCAAAGCTTCCCGACCTGTCACGATTTC
ACCACCTACCGACCTCCTACCTCTCTTCGTCTGGTCCGTGCTTCTCACGT
TGGATGCTCCAAACTTTCTCATCGAAACTACTCCTGCTCGATTATTCCCA
TGTACTTACGCCGTCATATGTCGAACGTCTCGGGGTCGAACAACCTCATC
TCTACAACCTTATCTCTGGTGCACGTATCGGCTGGGGGCATTCTTGCAGG
ATGCAAGCCGTCCTCTCGAAGTGGTGTCAGCTGCCGATCCGCGGTTTTCA
TCGCGGGTGGAGTTGTCTGTCAGGTAAGCTATTGAACTGCATACATACGG
ATTCATTCTGCGCGCAAGACGGTAATGCCCTCTTATCCGAGCGTAGCGGT
TAGTCATCCGCTCCTTTTGATGACGTGCGCCAATGCCCCTCTCCCCTCCC
CCGCCACTACCTTCCCCCTCCAATTCCATCTTGCTCGTTTATGTATATAC
AGTCAACACGCATCTGCCAACGACGAAGAAGTGCGCTGTAAATATGGCCC
TCCCCTCTTGTACCAGAACTTTCGAACTGTACCCGAGCTTAGAGTACAGA
CGTTTATGGTCTTGCCTTAACTCCGCCCCTCTGCTGCTATTTTGAAAATG
GAAACAATTTAGATTCGGCAAGACACTGCTCGTGCTAGAATGCGATGGAT
TAGAGCCGATGCTATACCCATTGGCGCGCAAAGATCTCGTGCATCAGGGC
CCGCGTTACGTTGTGCAGGTCGGGGATAAGGTGAGTTACTGTTGTTGATA
TCAAACAAGCCATGTCTTCCAGCCCAGCGGTGGCATTCTCGCTGATTGGT
GTATACTGTTATTTGACCTACCATCATGAAAGCTCACTGCAACGGCAGGC
GTAATGATTGTCTCAGTCAGGTTAAAGGCACCCGCATGGTCATGTCTGCC
TTACAAAGTGTTGTGTTGGTGCAGGTAGTATACCTATGATGCGTAATTGC
TCCGGTTGAGGGAAGTGGGGGCAGGGGATATTATTACGGACGATAGGATG
ACAAGTACAGTACTAGTCAACTTCTACACGGTACAACCTATTCGGTGCAA
ACACTAGACTCCACCAAAAAGCCGCAAATCATCAAATGTGGTTGCGTTTA
GTCTAATGCGGCTGGTGAATGGAACCGTTAACGCAATTGCTCACGGGTAC
TAAATGCGGCACTGGCTCTACAATTACTCAGTAATGCTCTGAAAAATATT
TCTCCCTCTTCCCCCTCTCCGGCCGCACTCTGTTCGACCCAAGTTGATGG
ACTACAACGAGAACTTCCGCCTGTTCATGGTTACCAGGAATCCGAAGCCT
GAGCTGCCGCCTGATGCCAGTGCTCTCGTGTGCGAGGTCAACTTTACTGT
TACCCGGTATGGTGCTTTCGTGTATTTGGGGCGAAACAATTGGTGAAATA
GCAATTCCTCTTTTTTTTCAGCACAATATATTTTCAGCCTTTGAGCAGGG
ACACGGAACGAGGACACGGTTAAAGGTTTTTCCGCCCGGACGGCAATGTC
AGACCGTGAAATTGAGTCGTTATGGGTTATTTGTACTCACGATGCACCCG
GACTCTGTGTTTTCTTACGAAAAGTTATATATTGTTGAAAAATAATGCCT
GTTCGTCATCCTGGTAAACCCAATAGGTGCTGGAGCGTTGGGCACGAACT
TGAATAGTGTCCATGGCCAGTACATTTGCTAGAATTATTGATTGATTCGA
CGCCTTTCTTGACCACATGCCACCCCACTTTTGAAGGTCTGGATTGGAAG
GCCAACTGTTAGGGGTCACCATCGAGCACGAGCAACCAGAGTTGGAGAAA
GCCAAGTCAGAAATGCTACGGAAGGAGGAAGGTTTCAAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig4892:2227..4517+

>mRNA_H-paniculata_contig4892.12038.1 ID=mRNA_H-paniculata_contig4892.12038.1|Name=mRNA_H-paniculata_contig4892.12038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig4892:2227..4517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAATGCTCTGGTATTAGCCAATGACCCAAATCGGGTTCCTTTCATCGT
CGACCCAGCGAACGCTTGCACTACTTGGCTTAAGTCCTTCCTTGCGAAGG
AGAATGCTCTGGTATTAGCCAATGACCCAAATCGGGTTCCTTTCATCGTC
GACCCAGCGAACGCTTGCACTACTTGGCTTAAGTCCTTCCTTGCGAAGGA
TGCAAGCCGTCCTCTCGAAGTGGTGTCAGCTGCCGATCCGCGGTTTTCAT
CGCGGGTGGAGTTGTCTGTCAGGATGCAAGCCGTCCTCTCGAAGTGGTGT
CAGCTGCCGATCCGCGGTTTTCATCGCGGGTGGAGTTGTCTGTCAGATTC
GGCAAGACACTGCTCGTGCTAGAATGCGATGGATTAGAGCCGATGCTATA
CCCATTGGCGCGCAAAGATCTCGTGCATCAGGGCCCGCGTTACGTTGTGC
AGGTCGGGGATAAGATTCGGCAAGACACTGCTCGTGCTAGAATGCGATGG
ATTAGAGCCGATGCTATACCCATTGGCGCGCAAAGATCTCGTGCATCAGG
GCCCGCGTTACGTTGTGCAGGTCGGGGATAAGTTGATGGACTACAACGAG
AACTTCCGCCTGTTCATGGTTACCAGGAATCCGAAGCCTGAGCTGCCGCC
TGATGCCAGTGCTCTCGTGTGCGAGGTCAACTTTACTGTTACCCGTTGAT
GGACTACAACGAGAACTTCCGCCTGTTCATGGTTACCAGGAATCCGAAGC
CTGAGCTGCCGCCTGATGCCAGTGCTCTCGTGTGCGAGGTCAACTTTACT
GTTACCCGGTCTGGATTGGAAGGCCAACTGTTAGGGGTCACCATCGAGCA
CGAGCAACCAGAGTTGGAGAAAGCCAAGTCAGAAATGCTACGGAAGGAGG
AAGGTTTCAAGGTCTGGATTGGAAGGCCAACTGTTAGGGGTCACCATCGA
GCACGAGCAACCAGAGTTGGAGAAAGCCAAGTCAGAAATGCTACGGAAGG
AGGAAGGTTTCAAG
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