mRNA_H-paniculata_contig4892.12040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4892.12040.1
Unique NamemRNA_H-paniculata_contig4892.12040.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: D8LN01_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN01_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.610e-29
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 2
Query:    2 VEGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETVR 205
            VEGS VKAQLL  LAWFHG+VQERRIF PQGWTKEYDFS+GDLRAG+MVM AEA   KN ++DW TVR
Sbjct:   94 VEGSVVKAQLLLALAWFHGIVQERRIFMPQGWTKEYDFSIGDLRAGAMVMTAEADKTKNGKVDWRTVR 161          
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: I7MGY5_TETTS (Cytoplasmic dynein 2 heavy chain 1 n=2 Tax=Tetrahymena thermophila TaxID=5911 RepID=I7MGY5_TETTS)

HSP 1 Score: 82.8 bits (203), Expect = 6.590e-17
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 2
Query:    5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
            +GSA +AQLLF+LAWFH ++QERR + PQGW+K Y+FS GDLRAG+ ++     + +   I WET+
Sbjct: 3791 KGSAQRAQLLFLLAWFHAILQERRTYIPQGWSKFYEFSYGDLRAGTQIIEGLVQDTQQKGISWETL 3856          
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A835ZB15_9STRA (Cytoplasmic dynein 2 heavy chain 1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB15_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.870e-17
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   11 SAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAV-------NIKNNRIDWETV 202
            + V+AQLLF+LAWFH VVQERR + PQGWTK Y+FS+GDLRAG+MV +AEA              IDW+TV
Sbjct:  453 NPVQAQLLFLLAWFHAVVQERRTYCPQGWTKAYEFSLGDLRAGTMV-IAEACAXXXXXXXXXXXAIDWDTV 522          
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A7S3UWF6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWF6_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 1.210e-16
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
            +G  ++AQLLFVLAWFH ++QERR + PQGWTK Y+FS GD RAG+M M           IDWET+
Sbjct:  511 KGKPLRAQLLFVLAWFHAIMQERRNYIPQGWTKFYEFSSGDFRAGTMAMETAG---DGGEIDWETI 573          
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: G0R1V5_ICHMG (Uncharacterized protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R1V5_ICHMG)

HSP 1 Score: 81.3 bits (199), Expect = 2.280e-16
Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 2
Query:    5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
            +GS  +AQLLF+LAWFH ++QERR + PQGW+K Y+FS GDLRAG+ ++ +   + +   ++WET+
Sbjct: 1216 KGSPQRAQLLFILAWFHAILQERRTYIPQGWSKFYEFSYGDLRAGTQIIESLIHDSQGKNLNWETL 1281          
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A7S2WI18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WI18_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.970e-16
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   17 VKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVM 151
            ++ QLLF+LAWFH +VQERR + PQGW+K Y+FSVGDLRAG++VM
Sbjct:   31 LRGQLLFLLAWFHAIVQERRTYIPQGWSKAYEFSVGDLRAGAIVM 75          
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A812RCH9_SYMMI (DYNC2H1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCH9_SYMMI)

HSP 1 Score: 79.7 bits (195), Expect = 7.910e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   11 SAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
            S V+A+LLF+LA FH VVQERR F PQGWTK Y+FS GDL+AG+ VM  EA++     +DWE +
Sbjct: 1274 SPVQARLLFLLACFHSVVQERRNFIPQGWTKFYEFSYGDLKAGTFVM--EALSAAGENVDWEAI 1335          
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A5D6XL42_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL42_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.980e-16
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
             GSA +AQLLF+LA+FH ++QERR + PQGWTK Y+FS GD RAG+ VM   +       IDW T+
Sbjct: 3490 RGSAARAQLLFLLAFFHALLQERRTYLPQGWTKFYEFSFGDFRAGANVMELASKTSAGGAIDWPTL 3555          
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: D0NN79_PHYIT (Dynein heavy chain n=9 Tax=Phytophthora TaxID=4783 RepID=D0NN79_PHYIT)

HSP 1 Score: 79.7 bits (195), Expect = 7.980e-16
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
            +G+  +AQLLF+LA+FH ++QERR + PQGWTK Y+FS GD RAGS VM        +  IDWET+
Sbjct: 3921 KGTPARAQLLFLLAFFHALLQERRTYIPQGWTKFYEFSFGDFRAGSNVMELACQTTGSGGIDWETL 3986          
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A8J5MA63_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MA63_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.030e-15
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
            +GS  +AQLLF+LA+FH ++QERR + PQGWT  Y+FS GD RAGS VM    +   +  IDW+T+
Sbjct: 2197 KGSPARAQLLFLLAFFHALLQERRTYIPQGWTNFYEFSFGDFRAGSNVMELACLTSGSGGIDWQTL 2262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN01_ECTSI1.610e-2977.94Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
I7MGY5_TETTS6.590e-1753.03Cytoplasmic dynein 2 heavy chain 1 n=2 Tax=Tetrahy... [more]
A0A835ZB15_9STRA8.870e-1759.15Cytoplasmic dynein 2 heavy chain 1-like protein n=... [more]
A0A7S3UWF6_HETAK1.210e-1656.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
G0R1V5_ICHMG2.280e-1650.00Uncharacterized protein n=1 Tax=Ichthyophthirius m... [more]
A0A7S2WI18_9STRA5.970e-1668.89Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A812RCH9_SYMMI7.910e-1659.38DYNC2H1 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A5D6XL42_9STRA7.980e-1654.55Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D0NN79_PHYIT7.980e-1654.55Dynein heavy chain n=9 Tax=Phytophthora TaxID=4783... [more]
A0A8J5MA63_9STRA2.030e-1553.03Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4892contigH-paniculata_contig4892:9976..10489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930444.9241087-CDS-H-paniculata_contig4892:9975..101071622930444.9241087-CDS-H-paniculata_contig4892:9975..10107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 9976..10107 +
1691481295.4293265-CDS-H-paniculata_contig4892:9975..101071691481295.4293265-CDS-H-paniculata_contig4892:9975..10107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 9976..10107 +
1622930444.952224-CDS-H-paniculata_contig4892:10414..104891622930444.952224-CDS-H-paniculata_contig4892:10414..10489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 10415..10489 +
1691481295.4407117-CDS-H-paniculata_contig4892:10414..104891691481295.4407117-CDS-H-paniculata_contig4892:10414..10489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4892 10415..10489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4892.12040.1prot_H-paniculata_contig4892.12040.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4892 9976..10489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4892.12040.1

>prot_H-paniculata_contig4892.12040.1 ID=prot_H-paniculata_contig4892.12040.1|Name=mRNA_H-paniculata_contig4892.12040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
GGGKRGEGAAAVCTGMVSRRGTGAQDLPTTGVDKRVRLFRWRPEGRQYGY
GCRGRQHKEQQDRLGDCAR
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mRNA from alignment at H-paniculata_contig4892:9976..10489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4892.12040.1 ID=mRNA_H-paniculata_contig4892.12040.1|Name=mRNA_H-paniculata_contig4892.12040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=514bp|location=Sequence derived from alignment at H-paniculata_contig4892:9976..10489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGAGGGAAGCGCGGTGAAGGCGCAGCTGCTGTTTGTACTGGCATGGT TTCACGGCGTGGTACAGGAGCGCAGGATCTTCCGACCACAGGGGTGGACA AAAGAGTACGACTTTTCCGTTGGAGACCTGAGGCAAGATACCTGTGGGCC TGGTCTCAATCTGGGTAGCAGCACGATCATTTTGACTAGGCTGCGGTTGC GGATGATGTAGGTTTTCTGGTTGATACGTCAACACTACAACAATAATAAC TGTGAATATATTCACGTGCCGTATTCGAAGAATGGGCAGCTTTCCGCCAA CAAGGGTGTGCCTTGAGCCACACACCCCGGAGTGCACCCTGCGTCAGAGA TATCGTTGGAATTTTGCCCATGTCTTCACATAATGTTACTCCTCTAACCG CGGAGAACCCTCCCCACGGCGTGCATTTTGACGCAACAGGGCAGGCAGTA TGGTTATGGTTGCAGAGGCCGTCAACATAAAGAACAACAGGATAGACTGG GAGACTGTGCGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4892:9976..10489+

>mRNA_H-paniculata_contig4892.12040.1 ID=mRNA_H-paniculata_contig4892.12040.1|Name=mRNA_H-paniculata_contig4892.12040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig4892:9976..10489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGAGGGAAGCGCGGTGAAGGCGCAGCTGCTGTTTGTACTGGCATGGT
TTCACGGCGTGGTACAGGAGCGCAGGATCTTCCGACCACAGGGGTGGACA
AAAGAGTACGACTTTTCCGTTGGAGACCTGAGGGTGGAGGGAAGCGCGGT
GAAGGCGCAGCTGCTGTTTGTACTGGCATGGTTTCACGGCGTGGTACAGG
AGCGCAGGATCTTCCGACCACAGGGGTGGACAAAAGAGTACGACTTTTCC
GTTGGAGACCTGAGGGCAGGCAGTATGGTTATGGTTGCAGAGGCCGTCAA
CATAAAGAACAACAGGATAGACTGGGAGACTGTGCGAGGGGCAGGCAGTA
TGGTTATGGTTGCAGAGGCCGTCAACATAAAGAACAACAGGATAGACTGG
GAGACTGTGCGAGG
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