mRNA_H-paniculata_contig4892.12040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: D8LN01_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN01_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.610e-29 Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 2
Query: 2 VEGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETVR 205
VEGS VKAQLL LAWFHG+VQERRIF PQGWTKEYDFS+GDLRAG+MVM AEA KN ++DW TVR
Sbjct: 94 VEGSVVKAQLLLALAWFHGIVQERRIFMPQGWTKEYDFSIGDLRAGAMVMTAEADKTKNGKVDWRTVR 161
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: I7MGY5_TETTS (Cytoplasmic dynein 2 heavy chain 1 n=2 Tax=Tetrahymena thermophila TaxID=5911 RepID=I7MGY5_TETTS) HSP 1 Score: 82.8 bits (203), Expect = 6.590e-17 Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 2
Query: 5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
+GSA +AQLLF+LAWFH ++QERR + PQGW+K Y+FS GDLRAG+ ++ + + I WET+
Sbjct: 3791 KGSAQRAQLLFLLAWFHAILQERRTYIPQGWSKFYEFSYGDLRAGTQIIEGLVQDTQQKGISWETL 3856
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A835ZB15_9STRA (Cytoplasmic dynein 2 heavy chain 1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB15_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 8.870e-17 Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 2
Query: 11 SAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAV-------NIKNNRIDWETV 202
+ V+AQLLF+LAWFH VVQERR + PQGWTK Y+FS+GDLRAG+MV +AEA IDW+TV
Sbjct: 453 NPVQAQLLFLLAWFHAVVQERRTYCPQGWTKAYEFSLGDLRAGTMV-IAEACAXXXXXXXXXXXAIDWDTV 522
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A7S3UWF6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWF6_HETAK) HSP 1 Score: 82.0 bits (201), Expect = 1.210e-16 Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 2
Query: 5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
+G ++AQLLFVLAWFH ++QERR + PQGWTK Y+FS GD RAG+M M IDWET+
Sbjct: 511 KGKPLRAQLLFVLAWFHAIMQERRNYIPQGWTKFYEFSSGDFRAGTMAMETAG---DGGEIDWETI 573
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: G0R1V5_ICHMG (Uncharacterized protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R1V5_ICHMG) HSP 1 Score: 81.3 bits (199), Expect = 2.280e-16 Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 2
Query: 5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
+GS +AQLLF+LAWFH ++QERR + PQGW+K Y+FS GDLRAG+ ++ + + + ++WET+
Sbjct: 1216 KGSPQRAQLLFILAWFHAILQERRTYIPQGWSKFYEFSYGDLRAGTQIIESLIHDSQGKNLNWETL 1281
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A7S2WI18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WI18_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 5.970e-16 Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 2
Query: 17 VKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVM 151
++ QLLF+LAWFH +VQERR + PQGW+K Y+FSVGDLRAG++VM
Sbjct: 31 LRGQLLFLLAWFHAIVQERRTYIPQGWSKAYEFSVGDLRAGAIVM 75
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A812RCH9_SYMMI (DYNC2H1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCH9_SYMMI) HSP 1 Score: 79.7 bits (195), Expect = 7.910e-16 Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2
Query: 11 SAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
S V+A+LLF+LA FH VVQERR F PQGWTK Y+FS GDL+AG+ VM EA++ +DWE +
Sbjct: 1274 SPVQARLLFLLACFHSVVQERRNFIPQGWTKFYEFSYGDLKAGTFVM--EALSAAGENVDWEAI 1335
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A5D6XL42_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL42_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 7.980e-16 Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 2
Query: 5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
GSA +AQLLF+LA+FH ++QERR + PQGWTK Y+FS GD RAG+ VM + IDW T+
Sbjct: 3490 RGSAARAQLLFLLAFFHALLQERRTYLPQGWTKFYEFSFGDFRAGANVMELASKTSAGGAIDWPTL 3555
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: D0NN79_PHYIT (Dynein heavy chain n=9 Tax=Phytophthora TaxID=4783 RepID=D0NN79_PHYIT) HSP 1 Score: 79.7 bits (195), Expect = 7.980e-16 Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 2
Query: 5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
+G+ +AQLLF+LA+FH ++QERR + PQGWTK Y+FS GD RAGS VM + IDWET+
Sbjct: 3921 KGTPARAQLLFLLAFFHALLQERRTYIPQGWTKFYEFSFGDFRAGSNVMELACQTTGSGGIDWETL 3986
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Match: A0A8J5MA63_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MA63_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.030e-15 Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 2
Query: 5 EGSAVKAQLLFVLAWFHGVVQERRIFRPQGWTKEYDFSVGDLRAGSMVMVAEAVNIKNNRIDWETV 202
+GS +AQLLF+LA+FH ++QERR + PQGWT Y+FS GD RAGS VM + + IDW+T+
Sbjct: 2197 KGSPARAQLLFLLAFFHALLQERRTYIPQGWTNFYEFSFGDFRAGSNVMELACLTSGSGGIDWQTL 2262 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4892.12040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4892.12040.1 >prot_H-paniculata_contig4892.12040.1 ID=prot_H-paniculata_contig4892.12040.1|Name=mRNA_H-paniculata_contig4892.12040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp GGGKRGEGAAAVCTGMVSRRGTGAQDLPTTGVDKRVRLFRWRPEGRQYGYback to top mRNA from alignment at H-paniculata_contig4892:9976..10489+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4892.12040.1 ID=mRNA_H-paniculata_contig4892.12040.1|Name=mRNA_H-paniculata_contig4892.12040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=514bp|location=Sequence derived from alignment at H-paniculata_contig4892:9976..10489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4892:9976..10489+ >mRNA_H-paniculata_contig4892.12040.1 ID=mRNA_H-paniculata_contig4892.12040.1|Name=mRNA_H-paniculata_contig4892.12040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig4892:9976..10489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |