mRNA_H-paniculata_contig4888.12030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4888.12030.1
Unique NamemRNA_H-paniculata_contig4888.12030.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5KS78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS78_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.620e-14
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:  180 RDFYDATDQASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHS 404
            + F    ++AS  GAGLW V+M RAL RL+G  KRK RP  RPPL D+P+A+   +LE + G R +RQLK+ GH+
Sbjct:  144 KSFTPERNKASFGGAGLWPVDMDRALTRLQGTAKRKERPTGRPPLEDVPIAMTHEQLEEAIGERCLRQLKAGGHT 218
[Close]
BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.020e-13
Identity = 50/142 (35.21%), Postives = 70/142 (49.30%), Query Frame = 3 
Query:  177 GRDFYDATDQASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHSRYRQAQERVTRPSILWSAGRVTNVVL------------LTSEEVLAKYREDTSREKEAKRLKNERA 566
            G  F    +++S  GAGLW VNM+RA+ RL+G  KR      RPPL D+P+A+   +LE+  G R +RQLK+ GH         V   S++    R   +              +T+E+ LAK  E    +KE    K ERA
Sbjct:  358 GATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVPIAVGNEQLEQDIGERGMRQLKAAGHLTTGLRVSTVMLGSVIRQRKRAKKMATSRGSLGLPDGGNITAEDFLAKVAEKERADKEESDAKAERA 499
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BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.170e-13
Identity = 50/142 (35.21%), Postives = 70/142 (49.30%), Query Frame = 3 
Query:  177 GRDFYDATDQASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHSRYRQAQERVTRPSILWSAGRVTNVVL------------LTSEEVLAKYREDTSREKEAKRLKNERA 566
            G  F    +++S  GAGLW VNM+RA+ RL+G  KR      RPPL D+P+A+   +LE+  G R +RQLK+ GH         V   S++    R   +              +T+E+ LAK  E    +KE    K ERA
Sbjct:  599 GATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVPIAVGNEQLEQDIGERGMRQLKAAGHLTTGLRVSTVMLGSVIRQRKRAKKMATSRGSLGLPDGANITAEDFLAKVAEKERADKEESDAKAERA 740
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BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5JAB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.870e-13
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:  201 DQASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHS 404
            ++AS  GAGLW V+M RAL RL+G  KRK  P  RPPL D+P+A+   +LE + G R +RQLK+ GH+
Sbjct:    9 NKASFSGAGLWPVDMDRALTRLQGTAKRKEGPTGRPPLEDVPIAMIHEQLEEAIGERGLRQLKAGGHT 76
[Close]
BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5JTM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.090e-12
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:  180 RDFYDATDQASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHS 404
            R F    ++AS  GAGLW V+M RAL RL+G  KRK  P  RPPL D+P+A+   +L+ + G R +RQLK+ GH+
Sbjct:  278 RSFTPERNKASFAGAGLWPVDMDRALTRLQGKAKRKEGPTGRPPLEDVPIAMTHEQLDEAIGERGLRQLKAGGHA 352
[Close]
BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.120e-12
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:  201 DQASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHS 404
            ++AS  GAGLW V+M RAL RL+G  KRK  P  RPPL D+P+A+   +LE + G R +RQLK+ GH+
Sbjct:  188 NKASFGGAGLWPVDMDRALTRLQGTAKRKEGPTGRPPLEDVPIAMTHEQLEEAIGERGLRQLKAGGHT 255
[Close]
BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5K828_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K828_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.800e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  207 ASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHS 404
            A L  AGLW V+M RAL RL+G  KRK  P  RPPL D+P+A++  +LE + G R +RQLK+ GH+
Sbjct:   66 AGLWXAGLWPVDMDRALTRLQGTAKRKEGPTGRPPLEDVPIAMSHEQLEEAIGERGLRQLKAGGHT 131
[Close]
BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5JGL8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 9.190e-12
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 
Query:  180 RDFYDATDQASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHS 404
            R F    ++ASL GAGLW V+M RAL RL+G  KRK  P  RPPL D+P+A+   +LE + G R +RQLK  G +
Sbjct:  181 RSFTPERNKASLGGAGLWPVDMDRALTRLQGTVKRKEGPTGRPPLEDVPIAMTHEQLEEAIGERGLRQLKVGGRT 255
[Close]
BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5L436_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L436_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.720e-12
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:  201 DQASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHS 404
            ++AS   AGLW V+M RAL RL+G  KRK  P  RPPL D+P+A++  +LE + G R +RQLK+ GH+
Sbjct:  155 NKASFARAGLWPVDMDRALTRLQGTAKRKEGPTGRPPLEDVPIAMSHEQLEEAIGERGLRQLKAGGHT 222
[Close]
BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Match: A0A6H5JS29_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS29_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.010e-11
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 3 
Query:  186 FYDATDQASLEGAGLWSVNMQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKSTGHS 404
            F    +++S  GAGLW VN +RAL RLKG  K+K R D+ PPL D+P+A    +LE+  G R++R L+  GH+
Sbjct:   13 FTPEINKSSFAGAGLWPVNKERALGRLKGTAKKKERRDECPPLQDVPIAALNEQLEKDIGERALRVLRGQGHN 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4888.12030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS78_9PHAE4.620e-1450.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV04_9PHAE2.020e-1335.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ12_9PHAE2.170e-1335.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAB3_9PHAE5.870e-1352.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM4_9PHAE1.090e-1249.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGL1_9PHAE2.120e-1252.94DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K828_9PHAE4.800e-1253.03Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGL8_9PHAE9.190e-1250.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L436_9PHAE9.720e-1251.47DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JS29_9PHAE1.010e-1146.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4888contigH-paniculata_contig4888:2664..3568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4888.12030.1prot_H-paniculata_contig4888.12030.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4888 2686..3078 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930444.0773215-UTR-H-paniculata_contig4888:2663..26851622930444.0773215-UTR-H-paniculata_contig4888:2663..2685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4888 2664..2685 -
1691481295.0366988-UTR-H-paniculata_contig4888:2663..26851691481295.0366988-UTR-H-paniculata_contig4888:2663..2685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4888 2664..2685 -
1622930444.1146553-UTR-H-paniculata_contig4888:3078..32601622930444.1146553-UTR-H-paniculata_contig4888:3078..3260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4888 3079..3260 -
1691481295.0602632-UTR-H-paniculata_contig4888:3078..32601691481295.0602632-UTR-H-paniculata_contig4888:3078..3260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4888 3079..3260 -
1622930444.1315842-UTR-H-paniculata_contig4888:3508..35681622930444.1315842-UTR-H-paniculata_contig4888:3508..3568Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4888 3509..3568 -
1691481295.076287-UTR-H-paniculata_contig4888:3508..35681691481295.076287-UTR-H-paniculata_contig4888:3508..3568Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4888 3509..3568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930444.096187-CDS-H-paniculata_contig4888:2685..30781622930444.096187-CDS-H-paniculata_contig4888:2685..3078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4888 2686..3078 -
1691481295.0477238-CDS-H-paniculata_contig4888:2685..30781691481295.0477238-CDS-H-paniculata_contig4888:2685..3078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4888 2686..3078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4888.12030.1

>prot_H-paniculata_contig4888.12030.1 ID=prot_H-paniculata_contig4888.12030.1|Name=mRNA_H-paniculata_contig4888.12030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MQRALDRLKGVGKRKSRPDDRPPLADMPVAINENKLERSPGPRSVRQLKS
TGHSRYRQAQERVTRPSILWSAGRVTNVVLLTSEEVLAKYREDTSREKEA
KRLKNERADAWAAKRMANEACMCRAVRQGE*
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mRNA from alignment at H-paniculata_contig4888:2664..3568-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4888.12030.1 ID=mRNA_H-paniculata_contig4888.12030.1|Name=mRNA_H-paniculata_contig4888.12030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=905bp|location=Sequence derived from alignment at H-paniculata_contig4888:2664..3568- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGGGCCGTCATGTCAACCACAATCATCAACAGGTGCAAGTGGCGTGG
CTCGGTACAGGTGACAACGGGGTTCCGGGCGCAACGTACACCGCGACCGA
CTCGTCTTACATCCAGGGAACAGTCTTAGTTAAATTTCTGAAAGAATTTG
ACCGCGACCTTGGTGCTAGTGGCTTCAAGGATGGAAAGCCTCATATTTTT
GTGTTTGATGGTCATGCCTCGCACGTGAACCTCCAAGTTGTCGAGTTGGC
GATGTCTCTGAATATTGCGTTGTTCCAATTCCCTTCTCTTTCCTCCCACA
CGATCCAGTCATTGGACGTCGCTGCTTCTGGCACCTTCAAATAGGCATCA
CCTCAGAATTTTGGACAACATCACGGCAGGATGCCGGTGAAAGCAGACAT
GGTCGAAATTTTCGGGTAAGCATCGGCCGGGATTTTTACGATGCCACAGA
TCAAGCGTCGCTCGAGGGAGCAGGATTGTGGTCTGTGAATATGCAGCGCG
CTCTGGACAGGCTAAAAGGTGTCGGAAAGAGAAAGTCCCGACCTGACGAC
CGCCCACCCCTGGCCGACATGCCCGTGGCGATCAACGAGAATAAGCTCGA
ACGGTCGCCCGGCCCCCGTTCAGTGCGGCAGCTAAAATCCACAGGCCACT
CGCGTTACCGGCAGGCTCAGGAGCGAGTAACGCGTCCATCAATCTTATGG
AGTGCGGGCAGAGTCACGAATGTGGTGCTCCTCACCAGCGAAGAAGTCCT
CGCCAAGTATCGTGAGGACACCAGCCGGGAAAAGGAAGCGAAACGTCTGA
AGAACGAACGCGCGGATGCCTGGGCGGCGAAACGGATGGCAAACGAGGCA
TGCATGTGCCGAGCAGTCAGGCAGGGAGAGTGAGCAAGTCGGAAGAGGCC
GCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4888:2664..3568-

>mRNA_H-paniculata_contig4888.12030.1 ID=mRNA_H-paniculata_contig4888.12030.1|Name=mRNA_H-paniculata_contig4888.12030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig4888:2664..3568- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGCGCTCTGGACAGGCTAAAAGGTGTCGGAAAGAGAAAGTCCCG
ACCTGACGACCGCCCACCCCTGGCCGACATGCCCGTGGCGATCAACGAGA
ATAAGCTCGAACGGTCGCCCGGCCCCCGTTCAGTGCGGCAGCTAAAATCC
ACAGGCCACTCGCGTTACCGGCAGGCTCAGGAGCGAGTAACGCGTCCATC
AATCTTATGGAGTGCGGGCAGAGTCACGAATGTGGTGCTCCTCACCAGCG
AAGAAGTCCTCGCCAAGTATCGTGAGGACACCAGCCGGGAAAAGGAAGCG
AAACGTCTGAAGAACGAACGCGCGGATGCCTGGGCGGCGAAACGGATGGC
AAACGAGGCATGCATGTGCCGAGCAGTCAGGCAGGGAGAGTGAATGCAGC
GCGCTCTGGACAGGCTAAAAGGTGTCGGAAAGAGAAAGTCCCGACCTGAC
GACCGCCCACCCCTGGCCGACATGCCCGTGGCGATCAACGAGAATAAGCT
CGAACGGTCGCCCGGCCCCCGTTCAGTGCGGCAGCTAAAATCCACAGGCC
ACTCGCGTTACCGGCAGGCTCAGGAGCGAGTAACGCGTCCATCAATCTTA
TGGAGTGCGGGCAGAGTCACGAATGTGGTGCTCCTCACCAGCGAAGAAGT
CCTCGCCAAGTATCGTGAGGACACCAGCCGGGAAAAGGAAGCGAAACGTC
TGAAGAACGAACGCGCGGATGCCTGGGCGGCGAAACGGATGGCAAACGAG
GCATGCATGTGCCGAGCAGTCAGGCAGGGAGAGTGA
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